Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02005 and DDA3937_RS02010 are separated by 363 nucleotides DDA3937_RS02010 and DDA3937_RS02015 are separated by 218 nucleotides DDA3937_RS02015 and DDA3937_RS02020 are separated by 228 nucleotides
DDA3937_RS02005: DDA3937_RS02005 - LPS export ABC transporter permease LptG, at 450,220 to 451,290
_RS02005
DDA3937_RS02010: DDA3937_RS02010 - tRNA-Leu, at 451,654 to 451,738
_RS02010
DDA3937_RS02015: DDA3937_RS02015 - integrase arm-type DNA-binding domain-containing protein, at 451,957 to 453,219
_RS02015
DDA3937_RS02020: DDA3937_RS02020 - DEAD/DEAH box helicase, at 453,448 to 456,006
_RS02020
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 451.338 kb on - strand at 451.465 kb on + strand at 451.529 kb on + strand at 451.530 kb on - strand at 451.581 kb on - strand at 451.646 kb on + strand at 451.763 kb on - strand at 451.892 kb on - strand at 451.943 kb on + strand at 451.943 kb on + strand at 451.944 kb on - strand at 452.008 kb on + strand at 452.009 kb on - strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.035 kb on + strand at 452.035 kb on + strand at 452.035 kb on + strand at 452.036 kb on - strand at 452.036 kb on - strand at 452.066 kb on - strand at 452.066 kb on - strand at 452.080 kb on + strand at 452.081 kb on - strand at 452.081 kb on - strand at 452.161 kb on - strand, within DDA3937_RS02015 at 452.175 kb on + strand, within DDA3937_RS02015 at 452.196 kb on + strand, within DDA3937_RS02015 at 452.196 kb on + strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.249 kb on - strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.329 kb on + strand, within DDA3937_RS02015 at 452.371 kb on - strand, within DDA3937_RS02015 at 452.408 kb on + strand, within DDA3937_RS02015 at 452.409 kb on - strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.475 kb on + strand, within DDA3937_RS02015 at 452.482 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.502 kb on + strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.511 kb on + strand, within DDA3937_RS02015 at 452.563 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.673 kb on - strand at 452.673 kb on - strand, within DDA3937_RS02015 at 452.728 kb on + strand, within DDA3937_RS02015 at 452.774 kb on - strand, within DDA3937_RS02015 at 452.779 kb on + strand, within DDA3937_RS02015 at 452.863 kb on - strand, within DDA3937_RS02015 at 452.956 kb on + strand, within DDA3937_RS02015 at 453.048 kb on - strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.060 kb on - strand, within DDA3937_RS02015 at 453.095 kb on - strand at 453.112 kb on + strand at 453.154 kb on + strand at 453.178 kb on + strand at 453.178 kb on + strand at 453.179 kb on - strand at 453.217 kb on + strand at 453.252 kb on - strand at 453.350 kb on - strand at 453.642 kb on + strand at 453.668 kb on - strand at 453.704 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.761 kb on - strand, within DDA3937_RS02020 at 453.820 kb on + strand, within DDA3937_RS02020 at 453.918 kb on + strand, within DDA3937_RS02020 at 453.955 kb on - strand, within DDA3937_RS02020 at 453.995 kb on + strand at 454.005 kb on - strand, within DDA3937_RS02020 at 454.077 kb on + strand, within DDA3937_RS02020 at 454.144 kb on - strand, within DDA3937_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 451,338 - -1.8 451,465 + -0.1 451,529 + -2.3 451,530 - -0.5 451,581 - +0.4 451,646 + -1.3 451,763 - +1.3 451,892 - +1.3 451,943 + -0.6 451,943 + -1.0 451,944 - -2.4 452,008 + -1.0 452,009 - -2.8 452,033 + -2.9 452,033 + +0.0 452,033 + -1.9 452,033 + -3.7 452,033 + +1.6 452,034 - +1.2 452,034 - -2.9 452,034 - -1.0 452,034 - +0.7 452,034 - -1.1 452,035 + +1.1 452,035 + +0.0 452,035 + +1.8 452,036 - +2.7 452,036 - +0.5 452,066 - -1.4 452,066 - +0.5 452,080 + +5.5 452,081 - -1.3 452,081 - +0.6 452,161 - DDA3937_RS02015 0.16 +0.2 452,175 + DDA3937_RS02015 0.17 +0.8 452,196 + DDA3937_RS02015 0.19 -1.6 452,196 + DDA3937_RS02015 0.19 +0.2 452,197 - DDA3937_RS02015 0.19 +0.4 452,197 - DDA3937_RS02015 0.19 -2.5 452,197 - DDA3937_RS02015 0.19 -1.9 452,197 - DDA3937_RS02015 0.19 -0.5 452,248 + DDA3937_RS02015 0.23 -0.2 452,248 + DDA3937_RS02015 0.23 -0.1 452,248 + DDA3937_RS02015 0.23 -1.1 452,249 - DDA3937_RS02015 0.23 -0.0 452,250 + DDA3937_RS02015 0.23 +1.7 452,250 + DDA3937_RS02015 0.23 +2.8 452,250 + DDA3937_RS02015 0.23 -1.2 452,250 + DDA3937_RS02015 0.23 -0.0 452,250 + DDA3937_RS02015 0.23 +1.0 452,250 + DDA3937_RS02015 0.23 -1.3 452,250 + DDA3937_RS02015 0.23 -3.9 452,250 + DDA3937_RS02015 0.23 +2.2 452,251 - DDA3937_RS02015 0.23 -2.2 452,251 - DDA3937_RS02015 0.23 -0.4 452,251 - DDA3937_RS02015 0.23 -1.9 452,329 + DDA3937_RS02015 0.29 +1.8 452,371 - DDA3937_RS02015 0.33 -1.7 452,408 + DDA3937_RS02015 0.36 -2.6 452,409 - DDA3937_RS02015 0.36 -2.4 452,441 + DDA3937_RS02015 0.38 +1.5 452,441 + DDA3937_RS02015 0.38 -0.6 452,441 + DDA3937_RS02015 0.38 -0.9 452,475 + DDA3937_RS02015 0.41 +2.0 452,482 + DDA3937_RS02015 0.42 -0.9 452,500 + DDA3937_RS02015 0.43 -0.3 452,500 + DDA3937_RS02015 0.43 -0.5 452,500 + DDA3937_RS02015 0.43 +0.1 452,500 + DDA3937_RS02015 0.43 -2.4 452,501 - DDA3937_RS02015 0.43 -0.9 452,501 - DDA3937_RS02015 0.43 +1.3 452,501 - DDA3937_RS02015 0.43 +2.8 452,501 - DDA3937_RS02015 0.43 -3.5 452,502 + DDA3937_RS02015 0.43 -1.1 452,503 - DDA3937_RS02015 0.43 -0.5 452,503 - DDA3937_RS02015 0.43 +1.0 452,503 - DDA3937_RS02015 0.43 -1.3 452,511 + DDA3937_RS02015 0.44 +0.3 452,563 + DDA3937_RS02015 0.48 -1.8 452,640 + DDA3937_RS02015 0.54 +0.2 452,640 + DDA3937_RS02015 0.54 -3.6 452,640 + DDA3937_RS02015 0.54 +0.2 452,641 - DDA3937_RS02015 0.54 +2.0 452,641 - DDA3937_RS02015 0.54 -1.5 452,672 + DDA3937_RS02015 0.57 -1.9 452,672 + DDA3937_RS02015 0.57 -1.9 452,672 + DDA3937_RS02015 0.57 -1.1 452,672 + DDA3937_RS02015 0.57 -2.6 452,672 + DDA3937_RS02015 0.57 +0.2 452,673 - +1.1 452,673 - DDA3937_RS02015 0.57 +0.0 452,728 + DDA3937_RS02015 0.61 +0.6 452,774 - DDA3937_RS02015 0.65 -2.9 452,779 + DDA3937_RS02015 0.65 -1.5 452,863 - DDA3937_RS02015 0.72 +0.7 452,956 + DDA3937_RS02015 0.79 -1.5 453,048 - DDA3937_RS02015 0.86 -1.8 453,059 + DDA3937_RS02015 0.87 -2.2 453,059 + DDA3937_RS02015 0.87 -2.5 453,060 - DDA3937_RS02015 0.87 -4.2 453,095 - +0.8 453,112 + +0.7 453,154 + +0.1 453,178 + -2.5 453,178 + -2.2 453,179 - +0.7 453,217 + -3.8 453,252 - -0.3 453,350 - -0.8 453,642 + -2.3 453,668 - +0.4 453,704 - DDA3937_RS02020 0.10 +1.0 453,744 - DDA3937_RS02020 0.12 -0.3 453,744 - DDA3937_RS02020 0.12 -1.5 453,744 - DDA3937_RS02020 0.12 -1.7 453,761 - DDA3937_RS02020 0.12 +0.1 453,820 + DDA3937_RS02020 0.15 -1.7 453,918 + DDA3937_RS02020 0.18 -1.7 453,955 - DDA3937_RS02020 0.20 +0.8 453,995 + +1.7 454,005 - DDA3937_RS02020 0.22 -1.1 454,077 + DDA3937_RS02020 0.25 +1.0 454,144 - DDA3937_RS02020 0.27 -3.0
Or see this region's nucleotide sequence