Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides DDA3937_RS01960 and DDA3937_RS01965 are separated by 283 nucleotides DDA3937_RS01965 and DDA3937_RS01970 are separated by 141 nucleotides
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527
_RS01965
DDA3937_RS01970: DDA3937_RS01970 - Tar ligand binding domain-containing protein, at 440,669 to 442,288
_RS01970
Position (kb) 439
440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand at 438.799 kb on - strand, within DDA3937_RS01960 at 438.834 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 439.096 kb on - strand, within DDA3937_RS01960 at 439.133 kb on - strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.135 kb on - strand at 439.174 kb on + strand at 439.174 kb on + strand at 439.178 kb on + strand at 439.192 kb on - strand at 439.210 kb on + strand at 439.210 kb on + strand at 439.211 kb on - strand at 439.309 kb on + strand at 439.310 kb on - strand at 439.310 kb on - strand at 439.323 kb on - strand at 439.323 kb on - strand at 439.327 kb on + strand at 439.327 kb on + strand at 439.328 kb on - strand at 439.329 kb on + strand at 439.330 kb on - strand at 439.358 kb on - strand at 439.359 kb on + strand at 439.405 kb on + strand at 439.406 kb on - strand at 439.418 kb on - strand at 439.437 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.459 kb on + strand at 439.460 kb on - strand at 439.460 kb on - strand at 439.539 kb on + strand at 439.540 kb on - strand at 439.540 kb on - strand at 439.612 kb on + strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.622 kb on + strand, within DDA3937_RS01965 at 439.623 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand at 439.640 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand, within DDA3937_RS01965 at 439.653 kb on + strand, within DDA3937_RS01965 at 439.672 kb on + strand, within DDA3937_RS01965 at 439.692 kb on + strand, within DDA3937_RS01965 at 439.693 kb on - strand, within DDA3937_RS01965 at 439.719 kb on + strand, within DDA3937_RS01965 at 439.720 kb on - strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.766 kb on - strand, within DDA3937_RS01965 at 439.822 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.894 kb on + strand, within DDA3937_RS01965 at 439.895 kb on - strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.135 kb on - strand at 440.135 kb on - strand, within DDA3937_RS01965 at 440.156 kb on - strand, within DDA3937_RS01965 at 440.166 kb on - strand, within DDA3937_RS01965 at 440.254 kb on + strand, within DDA3937_RS01965 at 440.255 kb on - strand, within DDA3937_RS01965 at 440.255 kb on - strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.258 kb on + strand, within DDA3937_RS01965 at 440.283 kb on - strand, within DDA3937_RS01965 at 440.354 kb on - strand, within DDA3937_RS01965 at 440.431 kb on + strand at 440.431 kb on + strand at 440.431 kb on + strand at 440.432 kb on - strand at 440.482 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.522 kb on - strand at 440.590 kb on + strand at 440.591 kb on - strand at 440.591 kb on - strand at 440.617 kb on + strand at 440.618 kb on - strand at 440.645 kb on + strand at 440.645 kb on + strand at 440.646 kb on - strand at 440.649 kb on - strand at 440.668 kb on + strand at 440.669 kb on - strand at 440.669 kb on - strand at 440.704 kb on + strand at 440.705 kb on - strand at 440.705 kb on - strand at 440.707 kb on + strand at 440.707 kb on + strand at 440.707 kb on + strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.708 kb on - strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.780 kb on - strand at 440.780 kb on - strand at 440.871 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.879 kb on + strand, within DDA3937_RS01970 at 440.987 kb on + strand, within DDA3937_RS01970 at 440.987 kb on + strand, within DDA3937_RS01970 at 440.988 kb on - strand, within DDA3937_RS01970 at 441.140 kb on + strand, within DDA3937_RS01970 at 441.140 kb on + strand, within DDA3937_RS01970 at 441.141 kb on - strand, within DDA3937_RS01970 at 441.179 kb on + strand, within DDA3937_RS01970 at 441.179 kb on + strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.180 kb on - strand, within DDA3937_RS01970 at 441.206 kb on + strand, within DDA3937_RS01970 at 441.206 kb on + strand, within DDA3937_RS01970 at 441.207 kb on - strand, within DDA3937_RS01970 at 441.207 kb on - strand, within DDA3937_RS01970 at 441.229 kb on + strand, within DDA3937_RS01970 at 441.235 kb on + strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.236 kb on - strand, within DDA3937_RS01970 at 441.299 kb on - strand, within DDA3937_RS01970 at 441.345 kb on + strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.346 kb on - strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.436 kb on + strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.437 kb on - strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.457 kb on + strand, within DDA3937_RS01970 at 441.458 kb on - strand, within DDA3937_RS01970 at 441.527 kb on - strand, within DDA3937_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 438,499 + DDA3937_RS01955 0.73 +1.9 438,499 + DDA3937_RS01955 0.73 -2.0 438,499 + DDA3937_RS01955 0.73 -1.6 438,499 + DDA3937_RS01955 0.73 -1.1 438,499 + DDA3937_RS01955 0.73 +0.4 438,500 - DDA3937_RS01955 0.74 -0.5 438,500 - DDA3937_RS01955 0.74 -0.8 438,500 - DDA3937_RS01955 0.74 -2.0 438,500 - DDA3937_RS01955 0.74 -1.1 438,500 - DDA3937_RS01955 0.74 -0.6 438,500 - DDA3937_RS01955 0.74 -1.1 438,500 - DDA3937_RS01955 0.74 -0.0 438,584 - DDA3937_RS01955 0.88 -2.0 438,603 + -0.3 438,628 + -3.1 438,639 + -4.1 438,640 - +1.8 438,799 - DDA3937_RS01960 0.22 -2.0 438,834 - DDA3937_RS01960 0.29 -0.9 438,843 - DDA3937_RS01960 0.31 -1.3 438,843 - DDA3937_RS01960 0.31 +0.8 439,096 - DDA3937_RS01960 0.83 -0.2 439,133 - -3.6 439,134 + -0.6 439,134 + -0.6 439,134 + +0.6 439,134 + +0.5 439,135 - -3.0 439,174 + -2.4 439,174 + +1.0 439,178 + -2.3 439,192 - -1.6 439,210 + +3.4 439,210 + +0.8 439,211 - +1.7 439,309 + +0.9 439,310 - +1.0 439,310 - -1.5 439,323 - -1.4 439,323 - +1.4 439,327 + +1.4 439,327 + -3.1 439,328 - -2.5 439,329 + +0.0 439,330 - -2.3 439,358 - +1.3 439,359 + -1.5 439,405 + -3.8 439,406 - -3.8 439,418 - +0.7 439,437 + -0.6 439,443 + -1.3 439,443 + -1.4 439,443 + +0.7 439,459 + -1.1 439,460 - -0.2 439,460 - -1.1 439,539 + -1.1 439,540 - -0.4 439,540 - +0.5 439,612 + DDA3937_RS01965 0.14 -1.8 439,620 - DDA3937_RS01965 0.15 +0.0 439,620 - DDA3937_RS01965 0.15 -0.0 439,622 + DDA3937_RS01965 0.15 -0.1 439,623 - DDA3937_RS01965 0.15 -1.3 439,640 - -0.3 439,640 - DDA3937_RS01965 0.17 -2.1 439,640 - DDA3937_RS01965 0.17 +0.7 439,653 + DDA3937_RS01965 0.18 -0.4 439,672 + DDA3937_RS01965 0.20 -0.2 439,692 + DDA3937_RS01965 0.22 -0.2 439,693 - DDA3937_RS01965 0.22 +0.1 439,719 + DDA3937_RS01965 0.24 -2.3 439,720 - DDA3937_RS01965 0.24 -1.0 439,765 + DDA3937_RS01965 0.29 -1.1 439,765 + DDA3937_RS01965 0.29 -2.8 439,766 - DDA3937_RS01965 0.29 -1.1 439,822 + DDA3937_RS01965 0.34 -0.6 439,835 + DDA3937_RS01965 0.35 -1.0 439,835 + DDA3937_RS01965 0.35 -1.6 439,836 - DDA3937_RS01965 0.35 +0.4 439,836 - DDA3937_RS01965 0.35 -0.9 439,836 - DDA3937_RS01965 0.35 -0.9 439,836 - DDA3937_RS01965 0.35 +0.8 439,836 - DDA3937_RS01965 0.35 +0.7 439,837 + DDA3937_RS01965 0.35 +0.7 439,837 + DDA3937_RS01965 0.35 +1.2 439,837 + DDA3937_RS01965 0.35 -1.2 439,837 + DDA3937_RS01965 0.35 +1.9 439,837 + DDA3937_RS01965 0.35 -1.1 439,837 + DDA3937_RS01965 0.35 -1.0 439,837 + DDA3937_RS01965 0.35 -1.8 439,837 + DDA3937_RS01965 0.35 +1.7 439,838 - DDA3937_RS01965 0.35 -2.0 439,838 - DDA3937_RS01965 0.35 -1.5 439,838 - DDA3937_RS01965 0.35 +1.2 439,841 + DDA3937_RS01965 0.36 +1.7 439,841 + DDA3937_RS01965 0.36 +0.7 439,841 + DDA3937_RS01965 0.36 +2.2 439,842 - DDA3937_RS01965 0.36 +1.2 439,842 - DDA3937_RS01965 0.36 -0.2 439,842 - DDA3937_RS01965 0.36 -1.8 439,842 - DDA3937_RS01965 0.36 +0.3 439,894 + DDA3937_RS01965 0.41 +1.7 439,895 - DDA3937_RS01965 0.41 -2.9 439,939 + DDA3937_RS01965 0.45 +0.9 439,939 + DDA3937_RS01965 0.45 -1.6 439,940 - DDA3937_RS01965 0.45 -0.3 439,940 - DDA3937_RS01965 0.45 -0.5 439,940 - DDA3937_RS01965 0.45 -2.0 440,090 + DDA3937_RS01965 0.59 -3.3 440,090 + DDA3937_RS01965 0.59 -2.9 440,091 - DDA3937_RS01965 0.59 -1.8 440,091 - DDA3937_RS01965 0.59 +0.1 440,091 - DDA3937_RS01965 0.59 -2.0 440,134 + DDA3937_RS01965 0.63 +0.9 440,134 + DDA3937_RS01965 0.63 -2.2 440,135 - +0.7 440,135 - DDA3937_RS01965 0.63 -0.4 440,156 - DDA3937_RS01965 0.65 -1.6 440,166 - DDA3937_RS01965 0.66 +0.8 440,254 + DDA3937_RS01965 0.74 +0.2 440,255 - DDA3937_RS01965 0.74 +1.2 440,255 - DDA3937_RS01965 0.74 -1.1 440,258 + DDA3937_RS01965 0.75 -1.0 440,258 + DDA3937_RS01965 0.75 +0.5 440,258 + DDA3937_RS01965 0.75 +1.2 440,258 + DDA3937_RS01965 0.75 -2.1 440,258 + DDA3937_RS01965 0.75 -0.3 440,258 + DDA3937_RS01965 0.75 +0.4 440,283 - DDA3937_RS01965 0.77 +0.0 440,354 - DDA3937_RS01965 0.84 +1.0 440,431 + +0.6 440,431 + -2.2 440,431 + -0.1 440,432 - -0.9 440,482 + +0.3 440,521 + +1.4 440,521 + +0.0 440,521 + +2.9 440,521 + +0.9 440,521 + +1.0 440,521 + +1.0 440,521 + +3.1 440,521 + +0.1 440,522 - +0.5 440,590 + -1.8 440,591 - +1.3 440,591 - -1.9 440,617 + -1.5 440,618 - +1.1 440,645 + -1.6 440,645 + -0.5 440,646 - -0.4 440,649 - +1.7 440,668 + -1.9 440,669 - -1.1 440,669 - -0.6 440,704 + +2.0 440,705 - -3.3 440,705 - +1.7 440,707 + -3.2 440,707 + +3.1 440,707 + +2.2 440,708 - +1.5 440,708 - +1.0 440,708 - +0.6 440,708 - +0.6 440,779 + +0.5 440,779 + -3.2 440,780 - +1.6 440,780 - -3.2 440,871 + DDA3937_RS01970 0.12 -0.4 440,879 + DDA3937_RS01970 0.13 -2.0 440,879 + DDA3937_RS01970 0.13 +0.2 440,879 + DDA3937_RS01970 0.13 +2.0 440,987 + DDA3937_RS01970 0.20 +0.0 440,987 + DDA3937_RS01970 0.20 -0.7 440,988 - DDA3937_RS01970 0.20 +0.6 441,140 + DDA3937_RS01970 0.29 -0.3 441,140 + DDA3937_RS01970 0.29 -0.6 441,141 - DDA3937_RS01970 0.29 +4.0 441,179 + DDA3937_RS01970 0.31 +1.3 441,179 + DDA3937_RS01970 0.31 -3.7 441,180 - DDA3937_RS01970 0.32 -3.0 441,180 - DDA3937_RS01970 0.32 -1.6 441,180 - DDA3937_RS01970 0.32 +2.9 441,180 - DDA3937_RS01970 0.32 -0.9 441,180 - DDA3937_RS01970 0.32 -0.6 441,206 + DDA3937_RS01970 0.33 -2.0 441,206 + DDA3937_RS01970 0.33 +1.4 441,207 - DDA3937_RS01970 0.33 +1.5 441,207 - DDA3937_RS01970 0.33 -1.6 441,229 + DDA3937_RS01970 0.35 -1.1 441,235 + DDA3937_RS01970 0.35 -2.5 441,236 - DDA3937_RS01970 0.35 +1.3 441,236 - DDA3937_RS01970 0.35 -0.4 441,236 - DDA3937_RS01970 0.35 -1.5 441,299 - DDA3937_RS01970 0.39 -3.7 441,345 + DDA3937_RS01970 0.42 +0.6 441,346 - DDA3937_RS01970 0.42 +2.1 441,346 - DDA3937_RS01970 0.42 +1.0 441,346 - DDA3937_RS01970 0.42 +0.9 441,436 + DDA3937_RS01970 0.47 -1.5 441,436 + DDA3937_RS01970 0.47 +2.2 441,436 + DDA3937_RS01970 0.47 -1.8 441,436 + DDA3937_RS01970 0.47 +0.1 441,436 + DDA3937_RS01970 0.47 -2.5 441,437 - DDA3937_RS01970 0.47 -3.6 441,437 - DDA3937_RS01970 0.47 -1.1 441,437 - +0.7 441,437 - DDA3937_RS01970 0.47 +2.8 441,437 - DDA3937_RS01970 0.47 +0.8 441,437 - DDA3937_RS01970 0.47 +2.1 441,437 - DDA3937_RS01970 0.47 -1.1 441,457 + DDA3937_RS01970 0.49 +2.8 441,457 + DDA3937_RS01970 0.49 -1.8 441,458 - DDA3937_RS01970 0.49 -2.6 441,527 - DDA3937_RS01970 0.53 -0.1
Or see this region's nucleotide sequence