Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01840

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01835 and DDA3937_RS01840 are separated by 49 nucleotidesDDA3937_RS01840 and DDA3937_RS01845 overlap by 1 nucleotides DDA3937_RS01835: DDA3937_RS01835 - LacI family DNA-binding transcriptional regulator, at 406,834 to 407,853 _RS01835 DDA3937_RS01840: DDA3937_RS01840 - sucrose-6-phosphate hydrolase, at 407,903 to 409,315 _RS01840 DDA3937_RS01845: DDA3937_RS01845 - PTS sucrose transporter subunit IIBC, at 409,315 to 410,685 _RS01845 Position (kb) 407 408 409 410Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 407.006 kb on + strandat 407.006 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.177 kb on + strand, within DDA3937_RS01835at 407.178 kb on - strand, within DDA3937_RS01835at 407.178 kb on - strand, within DDA3937_RS01835at 407.295 kb on - strand, within DDA3937_RS01835at 407.427 kb on + strand, within DDA3937_RS01835at 407.427 kb on + strand, within DDA3937_RS01835at 407.428 kb on - strand, within DDA3937_RS01835at 407.494 kb on + strand, within DDA3937_RS01835at 407.615 kb on + strandat 407.616 kb on - strand, within DDA3937_RS01835at 407.696 kb on + strand, within DDA3937_RS01835at 407.859 kb on + strandat 407.865 kb on + strandat 407.866 kb on - strandat 407.866 kb on - strandat 407.904 kb on + strandat 407.904 kb on + strandat 407.904 kb on + strandat 407.904 kb on + strandat 407.905 kb on - strandat 407.905 kb on - strandat 407.905 kb on - strandat 407.905 kb on - strandat 407.909 kb on + strandat 407.910 kb on - strandat 407.945 kb on - strandat 407.945 kb on - strandat 407.945 kb on - strandat 407.995 kb on - strandat 407.995 kb on - strandat 408.065 kb on + strand, within DDA3937_RS01840at 408.065 kb on + strand, within DDA3937_RS01840at 408.066 kb on - strand, within DDA3937_RS01840at 408.170 kb on + strand, within DDA3937_RS01840at 408.171 kb on - strand, within DDA3937_RS01840at 408.249 kb on + strand, within DDA3937_RS01840at 408.250 kb on - strand, within DDA3937_RS01840at 408.365 kb on - strand, within DDA3937_RS01840at 408.365 kb on - strand, within DDA3937_RS01840at 408.365 kb on - strand, within DDA3937_RS01840at 408.538 kb on - strand, within DDA3937_RS01840at 408.558 kb on + strand, within DDA3937_RS01840at 408.559 kb on - strand, within DDA3937_RS01840at 408.559 kb on - strand, within DDA3937_RS01840at 408.583 kb on - strand, within DDA3937_RS01840at 408.753 kb on + strand, within DDA3937_RS01840at 408.804 kb on + strand, within DDA3937_RS01840at 408.804 kb on + strand, within DDA3937_RS01840at 408.804 kb on + strand, within DDA3937_RS01840at 408.804 kb on + strand, within DDA3937_RS01840at 408.804 kb on + strand, within DDA3937_RS01840at 408.805 kb on - strand, within DDA3937_RS01840at 408.805 kb on - strand, within DDA3937_RS01840at 408.805 kb on - strand, within DDA3937_RS01840at 408.842 kb on + strand, within DDA3937_RS01840at 408.843 kb on - strand, within DDA3937_RS01840at 408.843 kb on - strand, within DDA3937_RS01840at 408.855 kb on + strand, within DDA3937_RS01840at 408.855 kb on + strand, within DDA3937_RS01840at 408.856 kb on - strand, within DDA3937_RS01840at 408.856 kb on - strand, within DDA3937_RS01840at 408.930 kb on + strand, within DDA3937_RS01840at 408.930 kb on + strand, within DDA3937_RS01840at 408.931 kb on - strand, within DDA3937_RS01840at 408.955 kb on - strand, within DDA3937_RS01840at 408.970 kb on + strand, within DDA3937_RS01840at 408.972 kb on + strand, within DDA3937_RS01840at 408.972 kb on + strand, within DDA3937_RS01840at 408.972 kb on + strand, within DDA3937_RS01840at 408.972 kb on + strand, within DDA3937_RS01840at 408.973 kb on - strand, within DDA3937_RS01840at 408.973 kb on - strand, within DDA3937_RS01840at 408.973 kb on - strand, within DDA3937_RS01840at 408.973 kb on - strand, within DDA3937_RS01840at 409.017 kb on + strand, within DDA3937_RS01840at 409.035 kb on + strand, within DDA3937_RS01840at 409.035 kb on + strand, within DDA3937_RS01840at 409.035 kb on + strand, within DDA3937_RS01840at 409.035 kb on + strand, within DDA3937_RS01840at 409.035 kb on + strand, within DDA3937_RS01840at 409.036 kb on - strand, within DDA3937_RS01840at 409.150 kb on - strand, within DDA3937_RS01840at 409.171 kb on + strand, within DDA3937_RS01840at 409.248 kb on + strandat 409.249 kb on - strandat 409.249 kb on - strandat 409.249 kb on - strandat 409.249 kb on - strandat 409.249 kb on - strandat 409.317 kb on - strandat 409.317 kb on - strandat 409.317 kb on - strandat 409.383 kb on + strandat 409.384 kb on - strandat 409.384 kb on - strandat 409.384 kb on - strandat 409.395 kb on - strandat 409.395 kb on - strandat 409.395 kb on - strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.417 kb on + strandat 409.418 kb on - strandat 409.640 kb on + strand, within DDA3937_RS01845at 409.640 kb on + strand, within DDA3937_RS01845at 409.640 kb on + strand, within DDA3937_RS01845at 409.640 kb on + strand, within DDA3937_RS01845at 409.640 kb on + strand, within DDA3937_RS01845at 409.641 kb on - strand, within DDA3937_RS01845at 409.641 kb on - strand, within DDA3937_RS01845at 409.641 kb on - strand, within DDA3937_RS01845at 409.641 kb on - strand, within DDA3937_RS01845at 409.641 kb on - strand, within DDA3937_RS01845at 409.643 kb on - strand, within DDA3937_RS01845at 409.788 kb on - strand, within DDA3937_RS01845at 409.972 kb on - strand, within DDA3937_RS01845at 410.157 kb on - strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.235 kb on + strand, within DDA3937_RS01845at 410.236 kb on - strand, within DDA3937_RS01845at 410.279 kb on + strand, within DDA3937_RS01845at 410.279 kb on + strand, within DDA3937_RS01845

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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407,006 + +4.2
407,006 + DDA3937_RS01835 0.17 +1.6
407,177 + DDA3937_RS01835 0.34 +2.6
407,177 + DDA3937_RS01835 0.34 +1.8
407,177 + DDA3937_RS01835 0.34 -2.7
407,177 + DDA3937_RS01835 0.34 -1.4
407,177 + DDA3937_RS01835 0.34 -0.4
407,178 - DDA3937_RS01835 0.34 +0.2
407,178 - DDA3937_RS01835 0.34 +1.9
407,295 - DDA3937_RS01835 0.45 +1.2
407,427 + DDA3937_RS01835 0.58 -2.4
407,427 + DDA3937_RS01835 0.58 +3.1
407,428 - DDA3937_RS01835 0.58 +2.2
407,494 + DDA3937_RS01835 0.65 -1.4
407,615 + +0.1
407,616 - DDA3937_RS01835 0.77 +2.8
407,696 + DDA3937_RS01835 0.85 -1.5
407,859 + +3.1
407,865 + +1.2
407,866 - -0.3
407,866 - +0.1
407,904 + +0.7
407,904 + -2.2
407,904 + +1.0
407,904 + +1.1
407,905 - -2.3
407,905 - +1.2
407,905 - +0.2
407,905 - -0.6
407,909 + -3.0
407,910 - -0.2
407,945 - -2.1
407,945 - +0.9
407,945 - +0.2
407,995 - +0.4
407,995 - +0.0
408,065 + DDA3937_RS01840 0.11 -2.7
408,065 + DDA3937_RS01840 0.11 +2.3
408,066 - DDA3937_RS01840 0.12 +1.7
408,170 + DDA3937_RS01840 0.19 -1.2
408,171 - DDA3937_RS01840 0.19 -2.9
408,249 + DDA3937_RS01840 0.24 -0.7
408,250 - DDA3937_RS01840 0.25 -2.3
408,365 - DDA3937_RS01840 0.33 -1.9
408,365 - DDA3937_RS01840 0.33 +1.0
408,365 - DDA3937_RS01840 0.33 -1.9
408,538 - DDA3937_RS01840 0.45 +0.2
408,558 + DDA3937_RS01840 0.46 +0.4
408,559 - DDA3937_RS01840 0.46 -0.4
408,559 - DDA3937_RS01840 0.46 +0.4
408,583 - DDA3937_RS01840 0.48 +0.8
408,753 + DDA3937_RS01840 0.60 +0.5
408,804 + DDA3937_RS01840 0.64 -1.4
408,804 + DDA3937_RS01840 0.64 +0.2
408,804 + DDA3937_RS01840 0.64 +0.4
408,804 + DDA3937_RS01840 0.64 -0.1
408,804 + DDA3937_RS01840 0.64 +0.6
408,805 - DDA3937_RS01840 0.64 -1.5
408,805 - DDA3937_RS01840 0.64 -1.3
408,805 - DDA3937_RS01840 0.64 +0.7
408,842 + DDA3937_RS01840 0.66 -0.7
408,843 - DDA3937_RS01840 0.67 +0.6
408,843 - DDA3937_RS01840 0.67 +0.6
408,855 + DDA3937_RS01840 0.67 +0.6
408,855 + DDA3937_RS01840 0.67 -1.4
408,856 - DDA3937_RS01840 0.67 -0.7
408,856 - DDA3937_RS01840 0.67 -1.4
408,930 + DDA3937_RS01840 0.73 -0.3
408,930 + DDA3937_RS01840 0.73 +0.6
408,931 - DDA3937_RS01840 0.73 +0.9
408,955 - DDA3937_RS01840 0.74 +0.9
408,970 + DDA3937_RS01840 0.76 -3.1
408,972 + DDA3937_RS01840 0.76 -0.7
408,972 + DDA3937_RS01840 0.76 -1.5
408,972 + DDA3937_RS01840 0.76 -0.4
408,972 + DDA3937_RS01840 0.76 -0.1
408,973 - DDA3937_RS01840 0.76 +0.6
408,973 - DDA3937_RS01840 0.76 -0.6
408,973 - DDA3937_RS01840 0.76 -1.4
408,973 - DDA3937_RS01840 0.76 -1.9
409,017 + DDA3937_RS01840 0.79 +0.1
409,035 + DDA3937_RS01840 0.80 +0.0
409,035 + DDA3937_RS01840 0.80 +1.6
409,035 + DDA3937_RS01840 0.80 -0.7
409,035 + DDA3937_RS01840 0.80 -0.1
409,035 + DDA3937_RS01840 0.80 +1.6
409,036 - DDA3937_RS01840 0.80 -1.9
409,150 - DDA3937_RS01840 0.88 +0.8
409,171 + DDA3937_RS01840 0.90 +0.7
409,248 + -2.1
409,249 - -1.1
409,249 - -0.5
409,249 - -0.4
409,249 - -1.9
409,249 - -0.9
409,317 - -2.6
409,317 - -0.0
409,317 - +1.1
409,383 + -2.9
409,384 - -0.7
409,384 - -3.2
409,384 - +0.5
409,395 - -2.4
409,395 - +1.1
409,395 - -3.3
409,417 + -2.1
409,417 + -1.2
409,417 + +0.4
409,417 + +1.4
409,417 + -0.5
409,417 + -0.5
409,417 + -1.7
409,418 - -1.9
409,640 + DDA3937_RS01845 0.24 +0.1
409,640 + DDA3937_RS01845 0.24 +0.9
409,640 + DDA3937_RS01845 0.24 +2.5
409,640 + DDA3937_RS01845 0.24 -0.7
409,640 + DDA3937_RS01845 0.24 +0.7
409,641 - DDA3937_RS01845 0.24 +0.7
409,641 - DDA3937_RS01845 0.24 -1.2
409,641 - DDA3937_RS01845 0.24 +0.4
409,641 - DDA3937_RS01845 0.24 +0.1
409,641 - DDA3937_RS01845 0.24 +1.2
409,643 - DDA3937_RS01845 0.24 +0.9
409,788 - DDA3937_RS01845 0.35 +4.3
409,972 - DDA3937_RS01845 0.48 +0.1
410,157 - DDA3937_RS01845 0.61 -2.2
410,235 + DDA3937_RS01845 0.67 -1.6
410,235 + DDA3937_RS01845 0.67 +0.8
410,235 + DDA3937_RS01845 0.67 -1.7
410,235 + DDA3937_RS01845 0.67 -1.3
410,235 + DDA3937_RS01845 0.67 -1.1
410,235 + DDA3937_RS01845 0.67 -1.4
410,236 - DDA3937_RS01845 0.67 +1.3
410,279 + DDA3937_RS01845 0.70 -2.1
410,279 + DDA3937_RS01845 0.70 -0.6

Or see this region's nucleotide sequence