Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01420 and DDA3937_RS01425 are separated by 163 nucleotides DDA3937_RS01425 and DDA3937_RS01430 are separated by 314 nucleotides
DDA3937_RS01420: DDA3937_RS01420 - oxidoreductase, at 316,196 to 317,182
_RS01420
DDA3937_RS01425: DDA3937_RS01425 - RNase E specificity factor CsrD, at 317,346 to 319,292
_RS01425
DDA3937_RS01430: DDA3937_RS01430 - rod shape-determining protein MreB, at 319,607 to 320,650
_RS01430
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.414 kb on + strand, within DDA3937_RS01420 at 316.415 kb on - strand, within DDA3937_RS01420 at 316.483 kb on - strand, within DDA3937_RS01420 at 316.627 kb on - strand, within DDA3937_RS01420 at 316.668 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 317.044 kb on + strand, within DDA3937_RS01420 at 317.045 kb on - strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.059 kb on + strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.060 kb on - strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.061 kb on + strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.062 kb on - strand, within DDA3937_RS01420 at 317.109 kb on - strand at 317.182 kb on + strand at 317.195 kb on + strand at 317.222 kb on - strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.227 kb on + strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.228 kb on - strand at 317.236 kb on + strand at 317.237 kb on - strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.243 kb on + strand at 317.244 kb on - strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.245 kb on + strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.246 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.259 kb on - strand at 317.261 kb on + strand at 317.261 kb on + strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.262 kb on - strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.273 kb on + strand at 317.274 kb on - strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.296 kb on + strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.297 kb on - strand at 317.328 kb on - strand at 317.328 kb on - strand at 317.336 kb on - strand at 317.371 kb on + strand at 317.372 kb on - strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.374 kb on + strand at 317.375 kb on - strand at 317.375 kb on - strand at 317.407 kb on + strand at 317.407 kb on + strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.408 kb on - strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.442 kb on + strand at 317.443 kb on - strand at 317.443 kb on - strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.444 kb on + strand at 317.445 kb on - strand at 317.456 kb on + strand at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.604 kb on + strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.605 kb on - strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.608 kb on + strand, within DDA3937_RS01425 at 317.612 kb on - strand, within DDA3937_RS01425 at 317.674 kb on + strand, within DDA3937_RS01425 at 317.675 kb on - strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.715 kb on + strand, within DDA3937_RS01425 at 317.716 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 317.780 kb on - strand, within DDA3937_RS01425 at 318.171 kb on + strand, within DDA3937_RS01425 at 318.232 kb on + strand, within DDA3937_RS01425 at 318.233 kb on - strand at 318.233 kb on - strand, within DDA3937_RS01425 at 318.233 kb on - strand, within DDA3937_RS01425 at 318.262 kb on - strand, within DDA3937_RS01425 at 318.264 kb on + strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.265 kb on - strand, within DDA3937_RS01425 at 318.351 kb on - strand, within DDA3937_RS01425 at 318.412 kb on - strand, within DDA3937_RS01425 at 318.476 kb on - strand, within DDA3937_RS01425 at 318.505 kb on - strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.566 kb on + strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.567 kb on - strand, within DDA3937_RS01425 at 318.657 kb on + strand, within DDA3937_RS01425 at 318.658 kb on - strand, within DDA3937_RS01425 at 318.658 kb on - strand, within DDA3937_RS01425 at 318.690 kb on + strand, within DDA3937_RS01425 at 318.690 kb on + strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.691 kb on - strand, within DDA3937_RS01425 at 318.755 kb on - strand, within DDA3937_RS01425 at 318.770 kb on + strand, within DDA3937_RS01425 at 318.770 kb on + strand, within DDA3937_RS01425 at 318.787 kb on + strand, within DDA3937_RS01425 at 318.804 kb on - strand, within DDA3937_RS01425 at 318.804 kb on - strand, within DDA3937_RS01425 at 318.890 kb on - strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.924 kb on + strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.925 kb on - strand, within DDA3937_RS01425 at 318.926 kb on + strand, within DDA3937_RS01425 at 318.926 kb on + strand, within DDA3937_RS01425 at 318.927 kb on - strand, within DDA3937_RS01425 at 318.927 kb on - strand, within DDA3937_RS01425 at 318.947 kb on - strand, within DDA3937_RS01425 at 318.947 kb on - strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.020 kb on + strand, within DDA3937_RS01425 at 319.021 kb on - strand, within DDA3937_RS01425 at 319.021 kb on - strand, within DDA3937_RS01425 at 319.021 kb on - strand at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.023 kb on - strand, within DDA3937_RS01425 at 319.169 kb on + strand at 319.169 kb on + strand at 319.199 kb on + strand at 319.284 kb on + strand at 319.284 kb on + strand at 319.284 kb on + strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.285 kb on - strand at 319.313 kb on - strand at 319.313 kb on - strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.317 kb on + strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.318 kb on - strand at 319.334 kb on - strand at 319.334 kb on - strand at 319.338 kb on + strand at 319.388 kb on + strand at 319.388 kb on + strand at 319.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 316,409 + DDA3937_RS01420 0.22 +0.1 316,409 + DDA3937_RS01420 0.22 -2.4 316,409 + DDA3937_RS01420 0.22 -0.7 316,409 + DDA3937_RS01420 0.22 -2.7 316,410 - DDA3937_RS01420 0.22 +0.6 316,410 - DDA3937_RS01420 0.22 +3.6 316,410 - DDA3937_RS01420 0.22 -1.4 316,414 + DDA3937_RS01420 0.22 +1.3 316,415 - DDA3937_RS01420 0.22 +0.9 316,483 - DDA3937_RS01420 0.29 +1.4 316,627 - DDA3937_RS01420 0.44 +1.6 316,668 + DDA3937_RS01420 0.48 -0.3 316,784 + DDA3937_RS01420 0.60 +0.7 316,784 + DDA3937_RS01420 0.60 +0.1 316,784 + DDA3937_RS01420 0.60 -1.3 316,784 + DDA3937_RS01420 0.60 -0.1 316,784 + DDA3937_RS01420 0.60 -1.8 316,785 - DDA3937_RS01420 0.60 +1.1 316,785 - DDA3937_RS01420 0.60 +1.5 316,785 - DDA3937_RS01420 0.60 -1.3 316,785 - DDA3937_RS01420 0.60 +2.3 316,785 - DDA3937_RS01420 0.60 +0.9 317,044 + DDA3937_RS01420 0.86 -2.2 317,045 - DDA3937_RS01420 0.86 -2.4 317,059 + DDA3937_RS01420 0.87 -1.7 317,059 + DDA3937_RS01420 0.87 +2.6 317,059 + DDA3937_RS01420 0.87 +0.1 317,060 - DDA3937_RS01420 0.88 +0.6 317,060 - DDA3937_RS01420 0.88 -0.2 317,060 - DDA3937_RS01420 0.88 -1.7 317,060 - DDA3937_RS01420 0.88 -1.8 317,060 - DDA3937_RS01420 0.88 -3.0 317,061 + DDA3937_RS01420 0.88 +0.4 317,061 + DDA3937_RS01420 0.88 +1.2 317,062 - DDA3937_RS01420 0.88 -3.4 317,062 - DDA3937_RS01420 0.88 -1.8 317,062 - DDA3937_RS01420 0.88 -2.5 317,062 - DDA3937_RS01420 0.88 +0.7 317,109 - +1.0 317,182 + -0.7 317,195 + -1.7 317,222 - +0.8 317,227 + +1.4 317,227 + +2.4 317,227 + -2.0 317,227 + -1.3 317,227 + -0.2 317,228 - -2.6 317,228 - +1.4 317,228 - +0.8 317,228 - -3.1 317,236 + +1.9 317,237 - -2.0 317,243 + +0.3 317,243 + -1.5 317,243 + +0.3 317,243 + +1.4 317,244 - -2.1 317,245 + -0.7 317,245 + -0.2 317,245 + -0.3 317,245 + +3.0 317,246 - +0.2 317,246 - -1.7 317,246 - +0.3 317,259 - +0.9 317,259 - -1.1 317,259 - +1.5 317,261 + +0.7 317,261 + -1.8 317,262 - +2.9 317,262 - +2.0 317,262 - -1.1 317,273 + -2.3 317,273 + +0.1 317,273 + +0.7 317,274 - -1.7 317,296 + +0.1 317,296 + -1.7 317,296 + +1.4 317,296 + +0.9 317,296 + +0.0 317,297 - +1.1 317,297 - -0.9 317,297 - -0.3 317,297 - +0.4 317,297 - -3.5 317,297 - +1.0 317,297 - -2.1 317,328 - -2.2 317,328 - +3.4 317,336 - -1.1 317,371 + -0.4 317,372 - -0.0 317,374 + -0.7 317,374 + -2.1 317,374 + -1.9 317,375 - +0.3 317,375 - -0.9 317,407 + +0.6 317,407 + -1.2 317,408 - -1.5 317,408 - +1.5 317,408 - -0.3 317,442 + +2.1 317,442 + -0.3 317,442 + +2.2 317,442 + -0.5 317,442 + +2.4 317,443 - +1.2 317,443 - -1.0 317,444 + +3.1 317,444 + -2.2 317,444 + -0.5 317,444 + -1.7 317,445 - -0.3 317,456 + +1.7 317,604 + DDA3937_RS01425 0.13 +0.4 317,604 + DDA3937_RS01425 0.13 +0.9 317,604 + DDA3937_RS01425 0.13 -1.3 317,605 - DDA3937_RS01425 0.13 +1.8 317,605 - DDA3937_RS01425 0.13 -2.9 317,605 - DDA3937_RS01425 0.13 +1.9 317,608 + DDA3937_RS01425 0.13 -1.8 317,608 + DDA3937_RS01425 0.13 +0.1 317,608 + DDA3937_RS01425 0.13 +2.6 317,612 - DDA3937_RS01425 0.14 -1.5 317,674 + DDA3937_RS01425 0.17 +0.7 317,675 - DDA3937_RS01425 0.17 +0.5 317,715 + DDA3937_RS01425 0.19 +0.4 317,715 + DDA3937_RS01425 0.19 +0.2 317,715 + DDA3937_RS01425 0.19 +0.7 317,716 - DDA3937_RS01425 0.19 -3.0 317,780 - DDA3937_RS01425 0.22 -0.7 317,780 - DDA3937_RS01425 0.22 -2.2 318,171 + DDA3937_RS01425 0.42 +2.1 318,232 + DDA3937_RS01425 0.46 +2.5 318,233 - +2.7 318,233 - DDA3937_RS01425 0.46 +1.8 318,233 - DDA3937_RS01425 0.46 -0.9 318,262 - DDA3937_RS01425 0.47 +0.2 318,264 + DDA3937_RS01425 0.47 -2.4 318,265 - DDA3937_RS01425 0.47 +3.7 318,265 - DDA3937_RS01425 0.47 -1.6 318,265 - DDA3937_RS01425 0.47 -2.9 318,351 - DDA3937_RS01425 0.52 +0.9 318,412 - DDA3937_RS01425 0.55 -3.3 318,476 - DDA3937_RS01425 0.58 -0.3 318,505 - DDA3937_RS01425 0.60 -1.3 318,566 + DDA3937_RS01425 0.63 -1.7 318,566 + DDA3937_RS01425 0.63 +4.0 318,566 + +0.7 318,566 + DDA3937_RS01425 0.63 +0.9 318,566 + DDA3937_RS01425 0.63 -1.5 318,566 + DDA3937_RS01425 0.63 -2.1 318,566 + DDA3937_RS01425 0.63 +3.0 318,566 + DDA3937_RS01425 0.63 +1.8 318,567 - DDA3937_RS01425 0.63 -1.3 318,567 - DDA3937_RS01425 0.63 -1.3 318,567 - DDA3937_RS01425 0.63 +2.2 318,567 - DDA3937_RS01425 0.63 +0.3 318,567 - DDA3937_RS01425 0.63 -2.0 318,657 + DDA3937_RS01425 0.67 -1.4 318,658 - DDA3937_RS01425 0.67 +0.7 318,658 - DDA3937_RS01425 0.67 +0.5 318,690 + DDA3937_RS01425 0.69 +0.2 318,690 + DDA3937_RS01425 0.69 -1.8 318,691 - DDA3937_RS01425 0.69 -1.8 318,691 - DDA3937_RS01425 0.69 +0.5 318,691 - DDA3937_RS01425 0.69 +1.1 318,691 - DDA3937_RS01425 0.69 +2.0 318,755 - DDA3937_RS01425 0.72 +1.6 318,770 + DDA3937_RS01425 0.73 -1.8 318,770 + DDA3937_RS01425 0.73 +0.3 318,787 + DDA3937_RS01425 0.74 -1.6 318,804 - DDA3937_RS01425 0.75 -2.8 318,804 - DDA3937_RS01425 0.75 -4.3 318,890 - DDA3937_RS01425 0.79 +0.6 318,924 + DDA3937_RS01425 0.81 +2.5 318,924 + DDA3937_RS01425 0.81 +1.7 318,924 + DDA3937_RS01425 0.81 -0.7 318,924 + DDA3937_RS01425 0.81 -3.1 318,924 + DDA3937_RS01425 0.81 -3.0 318,925 - DDA3937_RS01425 0.81 -0.2 318,925 - DDA3937_RS01425 0.81 -1.9 318,925 - DDA3937_RS01425 0.81 -2.9 318,926 + DDA3937_RS01425 0.81 -0.9 318,926 + DDA3937_RS01425 0.81 +2.7 318,927 - DDA3937_RS01425 0.81 -2.3 318,927 - DDA3937_RS01425 0.81 -0.3 318,947 - DDA3937_RS01425 0.82 -1.8 318,947 - DDA3937_RS01425 0.82 -1.9 319,020 + DDA3937_RS01425 0.86 +2.9 319,020 + DDA3937_RS01425 0.86 +2.6 319,020 + DDA3937_RS01425 0.86 -1.1 319,021 - DDA3937_RS01425 0.86 -2.2 319,021 - DDA3937_RS01425 0.86 -2.4 319,021 - -0.3 319,023 - DDA3937_RS01425 0.86 -2.1 319,023 - DDA3937_RS01425 0.86 -2.0 319,023 - DDA3937_RS01425 0.86 -1.5 319,023 - DDA3937_RS01425 0.86 -1.9 319,169 + -1.4 319,169 + -0.9 319,199 + +2.5 319,284 + -1.9 319,284 + +0.9 319,284 + +0.2 319,285 - -3.0 319,285 - +0.9 319,285 - -0.2 319,285 - -0.0 319,285 - +1.7 319,285 - +0.6 319,285 - -0.0 319,313 - -3.6 319,313 - +1.6 319,317 + -2.0 319,317 + -0.9 319,317 + +0.5 319,317 + +2.4 319,318 - -0.7 319,318 - +2.6 319,318 - -1.1 319,318 - +1.0 319,334 - -2.0 319,334 - +2.0 319,338 + +0.6 319,388 + +1.4 319,388 + -0.9 319,474 + +0.9
Or see this region's nucleotide sequence