Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01385 and DDA3937_RS01390 overlap by 11 nucleotides DDA3937_RS01390 and DDA3937_RS01395 are separated by 193 nucleotides
DDA3937_RS01385: DDA3937_RS01385 - sodium/pantothenate symporter, at 309,925 to 311,376
_RS01385
DDA3937_RS01390: DDA3937_RS01390 - YhdT family protein, at 311,366 to 311,608
_RS01390
DDA3937_RS01395: DDA3937_RS01395 - acetyl-CoA carboxylase biotin carboxylase subunit, at 311,802 to 313,145
_RS01395
Position (kb) 311
312 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 310.531 kb on + strand, within DDA3937_RS01385 at 310.532 kb on - strand, within DDA3937_RS01385 at 310.532 kb on - strand, within DDA3937_RS01385 at 310.763 kb on + strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.764 kb on - strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.862 kb on + strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.863 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.876 kb on - strand, within DDA3937_RS01385 at 310.889 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand, within DDA3937_RS01385 at 310.905 kb on - strand at 311.033 kb on + strand at 311.033 kb on + strand, within DDA3937_RS01385 at 311.033 kb on + strand, within DDA3937_RS01385 at 311.034 kb on - strand, within DDA3937_RS01385 at 311.034 kb on - strand, within DDA3937_RS01385 at 311.064 kb on - strand, within DDA3937_RS01385 at 311.162 kb on + strand, within DDA3937_RS01385 at 311.162 kb on + strand, within DDA3937_RS01385 at 311.168 kb on + strand, within DDA3937_RS01385 at 311.169 kb on - strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.210 kb on + strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.211 kb on - strand, within DDA3937_RS01385 at 311.215 kb on - strand, within DDA3937_RS01385 at 311.312 kb on + strand at 311.312 kb on + strand at 311.313 kb on - strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.338 kb on + strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.339 kb on - strand at 311.343 kb on - strand at 311.406 kb on - strand, within DDA3937_RS01390 at 311.537 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.544 kb on + strand, within DDA3937_RS01390 at 311.545 kb on - strand, within DDA3937_RS01390 at 311.559 kb on - strand, within DDA3937_RS01390 at 311.594 kb on - strand at 311.653 kb on + strand at 311.653 kb on + strand at 311.654 kb on - strand at 311.654 kb on - strand at 311.654 kb on - strand at 311.660 kb on + strand at 311.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 310,531 + DDA3937_RS01385 0.42 -1.1 310,532 - DDA3937_RS01385 0.42 -1.8 310,532 - DDA3937_RS01385 0.42 -0.1 310,763 + DDA3937_RS01385 0.58 +1.8 310,764 - DDA3937_RS01385 0.58 +0.2 310,764 - DDA3937_RS01385 0.58 -2.2 310,764 - DDA3937_RS01385 0.58 -1.4 310,764 - DDA3937_RS01385 0.58 -3.2 310,862 + DDA3937_RS01385 0.65 +1.7 310,862 + DDA3937_RS01385 0.65 -0.4 310,862 + DDA3937_RS01385 0.65 +0.7 310,862 + DDA3937_RS01385 0.65 -0.1 310,862 + DDA3937_RS01385 0.65 -4.8 310,863 - DDA3937_RS01385 0.65 -2.0 310,863 - DDA3937_RS01385 0.65 -1.6 310,863 - DDA3937_RS01385 0.65 -0.1 310,863 - DDA3937_RS01385 0.65 -1.2 310,863 - DDA3937_RS01385 0.65 +2.8 310,876 - DDA3937_RS01385 0.65 -0.5 310,876 - DDA3937_RS01385 0.65 +1.1 310,876 - DDA3937_RS01385 0.65 -0.2 310,876 - DDA3937_RS01385 0.65 +0.8 310,889 - DDA3937_RS01385 0.66 -2.8 310,905 - DDA3937_RS01385 0.67 -1.1 310,905 - DDA3937_RS01385 0.67 -2.3 310,905 - DDA3937_RS01385 0.67 -0.3 310,905 - DDA3937_RS01385 0.67 -2.8 310,905 - +0.7 311,033 + -0.3 311,033 + DDA3937_RS01385 0.76 -0.6 311,033 + DDA3937_RS01385 0.76 -1.9 311,034 - DDA3937_RS01385 0.76 -1.1 311,034 - DDA3937_RS01385 0.76 -2.6 311,064 - DDA3937_RS01385 0.78 -2.0 311,162 + DDA3937_RS01385 0.85 +0.7 311,162 + DDA3937_RS01385 0.85 -0.6 311,168 + DDA3937_RS01385 0.86 -1.3 311,169 - DDA3937_RS01385 0.86 -0.5 311,210 + DDA3937_RS01385 0.88 +0.7 311,210 + DDA3937_RS01385 0.88 +1.9 311,210 + DDA3937_RS01385 0.88 -1.8 311,210 + DDA3937_RS01385 0.88 -2.4 311,210 + DDA3937_RS01385 0.88 -1.3 311,210 + DDA3937_RS01385 0.88 -2.3 311,210 + DDA3937_RS01385 0.88 -2.0 311,211 - DDA3937_RS01385 0.89 -1.9 311,211 - DDA3937_RS01385 0.89 -2.2 311,211 - DDA3937_RS01385 0.89 -2.1 311,211 - DDA3937_RS01385 0.89 -1.8 311,211 - DDA3937_RS01385 0.89 -0.3 311,211 - DDA3937_RS01385 0.89 +0.2 311,211 - DDA3937_RS01385 0.89 -0.9 311,211 - DDA3937_RS01385 0.89 +0.7 311,215 - DDA3937_RS01385 0.89 -0.9 311,312 + -0.9 311,312 + -0.3 311,313 - -1.3 311,338 + -1.1 311,338 + -2.2 311,338 + -0.9 311,338 + -1.3 311,339 - +2.1 311,339 - +1.0 311,339 - +1.1 311,339 - +3.4 311,339 - +0.1 311,339 - -1.2 311,339 - -1.2 311,339 - -1.2 311,343 - -0.1 311,406 - DDA3937_RS01390 0.16 +0.1 311,537 + DDA3937_RS01390 0.70 -2.9 311,544 + DDA3937_RS01390 0.73 -1.7 311,544 + DDA3937_RS01390 0.73 +0.2 311,544 + DDA3937_RS01390 0.73 -1.1 311,545 - DDA3937_RS01390 0.74 -1.8 311,559 - DDA3937_RS01390 0.79 -0.9 311,594 - -2.7 311,653 + +0.5 311,653 + -2.9 311,654 - +0.1 311,654 - -0.9 311,654 - -2.5 311,660 + -1.7 311,685 + -0.4
Or see this region's nucleotide sequence