Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01255

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01240 and DDA3937_RS01245 are separated by 108 nucleotidesDDA3937_RS01245 and DDA3937_RS01250 are separated by 257 nucleotidesDDA3937_RS01250 and DDA3937_RS01255 are separated by 76 nucleotidesDDA3937_RS01255 and DDA3937_RS01260 are separated by 8 nucleotides DDA3937_RS01240: DDA3937_RS01240 - 23S ribosomal RNA, at 280,542 to 283,449 _RS01240 DDA3937_RS01245: DDA3937_RS01245 - 5S ribosomal RNA, at 283,558 to 283,673 _RS01245 DDA3937_RS01250: DDA3937_RS01250 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 283,931 to 284,167 _RS01250 DDA3937_RS01255: DDA3937_RS01255 - amino acid ABC transporter ATP-binding protein, at 284,244 to 285,005 _RS01255 DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108 _RS01260 Position (kb) 284 285 286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 283.678 kb on + strandat 283.680 kb on + strandat 283.975 kb on + strand, within DDA3937_RS01250at 283.979 kb on + strand, within DDA3937_RS01250at 284.170 kb on + strandat 284.241 kb on + strandat 284.245 kb on + strandat 284.246 kb on - strandat 284.246 kb on - strandat 284.254 kb on - strandat 284.276 kb on + strandat 284.276 kb on + strandat 284.277 kb on - strandat 284.572 kb on + strand, within DDA3937_RS01255at 284.611 kb on + strand, within DDA3937_RS01255at 284.612 kb on - strand, within DDA3937_RS01255at 284.612 kb on - strand, within DDA3937_RS01255at 284.612 kb on - strand, within DDA3937_RS01255at 284.676 kb on - strand, within DDA3937_RS01255at 284.676 kb on - strand, within DDA3937_RS01255at 284.756 kb on + strand, within DDA3937_RS01255at 284.790 kb on + strand, within DDA3937_RS01255at 284.790 kb on + strand, within DDA3937_RS01255at 284.831 kb on + strand, within DDA3937_RS01255at 284.882 kb on + strand, within DDA3937_RS01255at 284.882 kb on + strandat 284.882 kb on + strand, within DDA3937_RS01255at 284.882 kb on + strand, within DDA3937_RS01255at 284.883 kb on - strand, within DDA3937_RS01255at 284.883 kb on - strand, within DDA3937_RS01255at 284.912 kb on + strand, within DDA3937_RS01255at 284.913 kb on - strand, within DDA3937_RS01255at 284.922 kb on + strand, within DDA3937_RS01255at 284.922 kb on + strand, within DDA3937_RS01255at 284.923 kb on - strandat 284.938 kb on + strandat 284.945 kb on + strandat 284.945 kb on + strandat 284.945 kb on + strandat 284.946 kb on - strandat 284.946 kb on - strandat 284.946 kb on - strandat 284.972 kb on - strandat 285.050 kb on + strandat 285.061 kb on + strandat 285.061 kb on + strandat 285.110 kb on + strandat 285.110 kb on + strandat 285.110 kb on + strandat 285.110 kb on + strandat 285.111 kb on - strandat 285.111 kb on - strandat 285.111 kb on - strandat 285.111 kb on - strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.114 kb on + strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.115 kb on - strandat 285.295 kb on + strand, within DDA3937_RS01260at 285.296 kb on - strand, within DDA3937_RS01260at 285.296 kb on - strand, within DDA3937_RS01260at 285.333 kb on + strand, within DDA3937_RS01260at 285.334 kb on - strand, within DDA3937_RS01260at 285.384 kb on + strand, within DDA3937_RS01260at 285.384 kb on + strandat 285.384 kb on + strand, within DDA3937_RS01260at 285.385 kb on - strand, within DDA3937_RS01260at 285.385 kb on - strand, within DDA3937_RS01260at 285.493 kb on + strand, within DDA3937_RS01260at 285.504 kb on - strand, within DDA3937_RS01260at 285.631 kb on + strand, within DDA3937_RS01260at 285.632 kb on - strand, within DDA3937_RS01260at 285.720 kb on + strand, within DDA3937_RS01260at 285.721 kb on - strand, within DDA3937_RS01260at 285.745 kb on - strand, within DDA3937_RS01260at 285.745 kb on - strand, within DDA3937_RS01260at 285.745 kb on - strand, within DDA3937_RS01260at 285.745 kb on - strand, within DDA3937_RS01260at 285.745 kb on - strand, within DDA3937_RS01260at 285.804 kb on - strand, within DDA3937_RS01260at 285.844 kb on - strand, within DDA3937_RS01260at 285.853 kb on - strand, within DDA3937_RS01260at 285.853 kb on - strand, within DDA3937_RS01260at 285.853 kb on - strand, within DDA3937_RS01260at 285.853 kb on - strand, within DDA3937_RS01260at 285.937 kb on + strand, within DDA3937_RS01260at 285.938 kb on - strand, within DDA3937_RS01260

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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283,678 + -1.9
283,680 + +0.7
283,975 + DDA3937_RS01250 0.19 -1.8
283,979 + DDA3937_RS01250 0.20 +0.6
284,170 + +0.3
284,241 + +2.2
284,245 + +1.7
284,246 - -0.6
284,246 - -1.3
284,254 - -0.2
284,276 + +0.9
284,276 + -1.4
284,277 - -2.7
284,572 + DDA3937_RS01255 0.43 -1.1
284,611 + DDA3937_RS01255 0.48 -1.3
284,612 - DDA3937_RS01255 0.48 -0.8
284,612 - DDA3937_RS01255 0.48 +0.7
284,612 - DDA3937_RS01255 0.48 +0.9
284,676 - DDA3937_RS01255 0.57 -0.3
284,676 - DDA3937_RS01255 0.57 -0.4
284,756 + DDA3937_RS01255 0.67 -0.4
284,790 + DDA3937_RS01255 0.72 -0.5
284,790 + DDA3937_RS01255 0.72 -3.5
284,831 + DDA3937_RS01255 0.77 +1.0
284,882 + DDA3937_RS01255 0.84 -1.1
284,882 + -0.3
284,882 + DDA3937_RS01255 0.84 +0.5
284,882 + DDA3937_RS01255 0.84 -1.1
284,883 - DDA3937_RS01255 0.84 -0.3
284,883 - DDA3937_RS01255 0.84 -1.5
284,912 + DDA3937_RS01255 0.88 -2.0
284,913 - DDA3937_RS01255 0.88 -0.1
284,922 + DDA3937_RS01255 0.89 +0.9
284,922 + DDA3937_RS01255 0.89 -0.1
284,923 - -0.3
284,938 + -2.3
284,945 + -1.3
284,945 + +0.7
284,945 + +0.9
284,946 - -1.3
284,946 - -1.1
284,946 - -1.6
284,972 - -2.7
285,050 + -0.9
285,061 + -0.3
285,061 + -2.7
285,110 + +1.3
285,110 + -0.7
285,110 + -2.2
285,110 + -1.6
285,111 - -4.0
285,111 - -0.7
285,111 - +0.3
285,111 - +0.4
285,114 + +1.1
285,114 + +1.1
285,114 + +1.1
285,114 + -3.1
285,114 + -1.7
285,114 + -2.7
285,114 + +2.4
285,114 + -1.3
285,114 + -2.5
285,114 + -1.4
285,114 + +1.9
285,115 - +0.6
285,115 - +0.2
285,115 - +1.6
285,115 - +0.6
285,115 - +0.0
285,115 - -2.7
285,115 - +0.2
285,115 - +1.6
285,295 + DDA3937_RS01260 0.26 +0.8
285,296 - DDA3937_RS01260 0.26 -2.1
285,296 - DDA3937_RS01260 0.26 -3.3
285,333 + DDA3937_RS01260 0.29 +0.6
285,334 - DDA3937_RS01260 0.29 -1.4
285,384 + DDA3937_RS01260 0.34 -1.1
285,384 + +1.7
285,384 + DDA3937_RS01260 0.34 -3.5
285,385 - DDA3937_RS01260 0.34 -0.9
285,385 - DDA3937_RS01260 0.34 +1.6
285,493 + DDA3937_RS01260 0.44 -2.2
285,504 - DDA3937_RS01260 0.45 -1.6
285,631 + DDA3937_RS01260 0.56 -1.3
285,632 - DDA3937_RS01260 0.56 +0.9
285,720 + DDA3937_RS01260 0.64 -0.3
285,721 - DDA3937_RS01260 0.65 -0.7
285,745 - DDA3937_RS01260 0.67 -0.2
285,745 - DDA3937_RS01260 0.67 -3.0
285,745 - DDA3937_RS01260 0.67 -2.3
285,745 - DDA3937_RS01260 0.67 -2.6
285,745 - DDA3937_RS01260 0.67 -3.5
285,804 - DDA3937_RS01260 0.72 +0.2
285,844 - DDA3937_RS01260 0.76 -2.7
285,853 - DDA3937_RS01260 0.77 -0.3
285,853 - DDA3937_RS01260 0.77 -2.2
285,853 - DDA3937_RS01260 0.77 -3.0
285,853 - DDA3937_RS01260 0.77 -2.9
285,937 + DDA3937_RS01260 0.84 +0.4
285,938 - DDA3937_RS01260 0.84 +1.8

Or see this region's nucleotide sequence