Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00975 and DDA3937_RS00980 are separated by 206 nucleotides DDA3937_RS00980 and DDA3937_RS00985 are separated by 14 nucleotides DDA3937_RS00985 and DDA3937_RS00990 are separated by 12 nucleotides
DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027
_RS00975
DDA3937_RS00980: DDA3937_RS00980 - HTH-type transcriptional repressor FabR, at 226,234 to 226,872
_RS00980
DDA3937_RS00985: DDA3937_RS00985 - YijD family membrane protein, at 226,887 to 227,261
_RS00985
DDA3937_RS00990: DDA3937_RS00990 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 227,274 to 228,377
_RS00990
Position (kb) 226
227 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 225.538 kb on - strand, within DDA3937_RS00975 at 225.659 kb on - strand, within DDA3937_RS00975 at 225.910 kb on + strand at 225.924 kb on - strand at 226.015 kb on - strand at 226.053 kb on + strand at 226.054 kb on - strand at 226.077 kb on - strand at 226.093 kb on + strand at 226.117 kb on + strand at 226.117 kb on + strand at 226.142 kb on - strand at 226.142 kb on - strand at 226.144 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.169 kb on - strand at 226.176 kb on - strand at 226.185 kb on + strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.204 kb on + strand at 226.204 kb on + strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.232 kb on + strand at 226.301 kb on + strand, within DDA3937_RS00980 at 226.301 kb on + strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.368 kb on + strand, within DDA3937_RS00980 at 226.379 kb on - strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.608 kb on - strand, within DDA3937_RS00980 at 226.629 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.669 kb on - strand, within DDA3937_RS00980 at 226.718 kb on + strand, within DDA3937_RS00980 at 226.719 kb on - strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.819 kb on + strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.823 kb on - strand at 226.823 kb on - strand at 226.871 kb on - strand at 226.900 kb on + strand at 226.901 kb on - strand at 226.982 kb on + strand, within DDA3937_RS00985 at 226.982 kb on + strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 227.017 kb on + strand, within DDA3937_RS00985 at 227.031 kb on + strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.050 kb on - strand, within DDA3937_RS00985 at 227.117 kb on - strand, within DDA3937_RS00985 at 227.121 kb on + strand, within DDA3937_RS00985 at 227.121 kb on + strand, within DDA3937_RS00985 at 227.134 kb on + strand, within DDA3937_RS00985 at 227.135 kb on - strand, within DDA3937_RS00985 at 227.135 kb on - strand, within DDA3937_RS00985 at 227.253 kb on - strand at 227.259 kb on + strand at 227.275 kb on + strand at 227.276 kb on - strand at 227.318 kb on + strand at 227.319 kb on - strand at 227.319 kb on - strand at 227.320 kb on + strand at 227.370 kb on + strand at 227.370 kb on + strand at 227.371 kb on - strand at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.424 kb on - strand, within DDA3937_RS00990 at 227.424 kb on - strand, within DDA3937_RS00990 at 227.567 kb on + strand, within DDA3937_RS00990 at 227.603 kb on + strand, within DDA3937_RS00990 at 227.629 kb on + strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.725 kb on + strand, within DDA3937_RS00990 at 227.726 kb on - strand, within DDA3937_RS00990 at 227.726 kb on - strand, within DDA3937_RS00990 at 227.789 kb on + strand, within DDA3937_RS00990 at 227.836 kb on + strand, within DDA3937_RS00990 at 227.837 kb on - strand, within DDA3937_RS00990 at 227.837 kb on - strand, within DDA3937_RS00990
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 225,538 - DDA3937_RS00975 0.65 +1.8 225,659 - DDA3937_RS00975 0.74 +4.4 225,910 + +0.5 225,924 - -1.3 226,015 - +2.7 226,053 + +4.5 226,054 - +4.8 226,077 - +1.7 226,093 + +2.7 226,117 + -0.8 226,117 + -1.3 226,142 - +1.4 226,142 - +1.0 226,144 + +1.4 226,164 + -1.2 226,164 + +1.5 226,164 + +2.4 226,164 + -2.0 226,164 + -1.9 226,164 + +2.7 226,164 + +0.3 226,164 + -3.0 226,164 + -1.3 226,164 + -0.8 226,165 - +0.5 226,165 - +0.4 226,165 - +0.9 226,165 - -0.4 226,165 - -2.4 226,165 - -3.0 226,165 - +1.3 226,165 - +1.8 226,168 + -2.2 226,168 + +1.1 226,168 + -0.4 226,169 - +1.2 226,176 - +0.3 226,185 + -0.9 226,186 - -1.1 226,186 - +0.7 226,186 - +2.9 226,187 + +0.7 226,187 + -0.2 226,187 + +1.4 226,187 + +0.1 226,187 + +1.9 226,188 - +0.8 226,188 - -1.7 226,188 - -0.2 226,188 - -0.5 226,188 - -0.1 226,188 - +0.2 226,188 - +0.9 226,188 - +0.6 226,188 - -2.3 226,188 - -0.9 226,188 - +0.8 226,188 - +1.0 226,204 + +2.9 226,204 + -0.6 226,205 - +0.4 226,205 - +0.9 226,205 - -2.9 226,205 - -0.7 226,205 - +0.2 226,205 - -0.8 226,232 + +0.1 226,301 + DDA3937_RS00980 0.10 +0.8 226,301 + DDA3937_RS00980 0.10 +1.3 226,302 - DDA3937_RS00980 0.11 -0.1 226,302 - DDA3937_RS00980 0.11 +0.1 226,368 + DDA3937_RS00980 0.21 +0.4 226,379 - DDA3937_RS00980 0.23 +0.1 226,473 + DDA3937_RS00980 0.37 +1.6 226,473 + DDA3937_RS00980 0.37 +0.3 226,539 + DDA3937_RS00980 0.48 +1.0 226,539 + DDA3937_RS00980 0.48 +0.5 226,608 - DDA3937_RS00980 0.59 -0.0 226,629 + DDA3937_RS00980 0.62 +0.7 226,648 + DDA3937_RS00980 0.65 +0.9 226,648 + DDA3937_RS00980 0.65 -1.1 226,648 + DDA3937_RS00980 0.65 -0.0 226,648 + DDA3937_RS00980 0.65 +1.0 226,649 - DDA3937_RS00980 0.65 +0.6 226,649 - DDA3937_RS00980 0.65 +0.6 226,649 - DDA3937_RS00980 0.65 -0.8 226,669 - DDA3937_RS00980 0.68 -1.5 226,718 + DDA3937_RS00980 0.76 +0.3 226,719 - DDA3937_RS00980 0.76 +1.2 226,800 + DDA3937_RS00980 0.89 -0.1 226,800 + DDA3937_RS00980 0.89 -0.5 226,800 + DDA3937_RS00980 0.89 -1.8 226,800 + DDA3937_RS00980 0.89 -0.1 226,801 - DDA3937_RS00980 0.89 +0.4 226,801 - DDA3937_RS00980 0.89 -2.3 226,801 - DDA3937_RS00980 0.89 -1.3 226,801 - DDA3937_RS00980 0.89 -0.1 226,801 - DDA3937_RS00980 0.89 -1.6 226,801 - DDA3937_RS00980 0.89 +0.9 226,819 + -0.5 226,820 - +0.5 226,820 - +0.0 226,820 - -1.2 226,820 - -1.9 226,820 - -3.8 226,820 - +0.0 226,822 + +0.7 226,822 + +1.3 226,822 + -0.1 226,822 + +1.1 226,823 - -0.4 226,823 - +0.0 226,871 - +0.1 226,900 + -0.9 226,901 - -2.9 226,982 + DDA3937_RS00985 0.25 +0.9 226,982 + DDA3937_RS00985 0.25 -1.0 226,983 - DDA3937_RS00985 0.26 +0.8 226,983 - DDA3937_RS00985 0.26 +0.5 227,017 + DDA3937_RS00985 0.35 +0.1 227,031 + DDA3937_RS00985 0.38 -1.1 227,032 - DDA3937_RS00985 0.39 -0.0 227,032 - DDA3937_RS00985 0.39 -1.8 227,032 - DDA3937_RS00985 0.39 -4.2 227,049 + DDA3937_RS00985 0.43 -0.9 227,049 + DDA3937_RS00985 0.43 -2.2 227,049 + DDA3937_RS00985 0.43 -2.8 227,050 - DDA3937_RS00985 0.43 -2.2 227,117 - DDA3937_RS00985 0.61 -1.3 227,121 + DDA3937_RS00985 0.62 -0.9 227,121 + DDA3937_RS00985 0.62 -0.7 227,134 + DDA3937_RS00985 0.66 -1.1 227,135 - DDA3937_RS00985 0.66 +1.0 227,135 - DDA3937_RS00985 0.66 -0.9 227,253 - -3.0 227,259 + +0.6 227,275 + +3.8 227,276 - -2.1 227,318 + +1.1 227,319 - -0.1 227,319 - +0.2 227,320 + +2.8 227,370 + -1.3 227,370 + +0.6 227,371 - -2.6 227,416 + DDA3937_RS00990 0.13 -1.3 227,416 + DDA3937_RS00990 0.13 -0.9 227,416 + DDA3937_RS00990 0.13 -0.2 227,416 + DDA3937_RS00990 0.13 -2.5 227,416 + DDA3937_RS00990 0.13 -1.1 227,416 + DDA3937_RS00990 0.13 -3.2 227,416 + DDA3937_RS00990 0.13 -0.2 227,417 - DDA3937_RS00990 0.13 -0.3 227,417 - DDA3937_RS00990 0.13 -0.8 227,417 - DDA3937_RS00990 0.13 -0.3 227,417 - DDA3937_RS00990 0.13 +0.0 227,417 - DDA3937_RS00990 0.13 +2.1 227,417 - DDA3937_RS00990 0.13 +2.2 227,417 - DDA3937_RS00990 0.13 -2.4 227,424 - DDA3937_RS00990 0.14 -0.3 227,424 - DDA3937_RS00990 0.14 -0.9 227,567 + DDA3937_RS00990 0.27 -2.3 227,603 + DDA3937_RS00990 0.30 -0.4 227,629 + DDA3937_RS00990 0.32 +2.8 227,630 - DDA3937_RS00990 0.32 -2.4 227,630 - DDA3937_RS00990 0.32 -0.3 227,630 - DDA3937_RS00990 0.32 -2.0 227,630 - DDA3937_RS00990 0.32 -0.5 227,725 + DDA3937_RS00990 0.41 -0.9 227,726 - DDA3937_RS00990 0.41 +0.3 227,726 - DDA3937_RS00990 0.41 +1.6 227,789 + DDA3937_RS00990 0.47 -1.1 227,836 + DDA3937_RS00990 0.51 +0.7 227,837 - DDA3937_RS00990 0.51 +1.2 227,837 - DDA3937_RS00990 0.51 -1.6
Or see this region's nucleotide sequence