Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00400 and DDA3937_RS00405 are separated by 3 nucleotides DDA3937_RS00405 and DDA3937_RS00410 are separated by 16 nucleotides
DDA3937_RS00400: DDA3937_RS00400 - signal transduction protein, at 93,813 to 95,483
_RS00400
DDA3937_RS00405: DDA3937_RS00405 - dihydrodipicolinate synthase family protein, at 95,487 to 96,446
_RS00405
DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509
_RS00410
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 94.588 kb on + strand, within DDA3937_RS00400 at 94.589 kb on - strand, within DDA3937_RS00400 at 94.594 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.624 kb on - strand, within DDA3937_RS00400 at 94.768 kb on - strand, within DDA3937_RS00400 at 95.025 kb on + strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.026 kb on - strand, within DDA3937_RS00400 at 95.097 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.280 kb on + strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.281 kb on - strand, within DDA3937_RS00400 at 95.370 kb on + strand at 95.435 kb on + strand at 95.435 kb on + strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.436 kb on - strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.481 kb on + strand at 95.482 kb on - strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.493 kb on + strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.494 kb on - strand at 95.526 kb on + strand at 95.526 kb on + strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.527 kb on - strand at 95.613 kb on + strand, within DDA3937_RS00405 at 95.614 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.709 kb on - strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.934 kb on + strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.935 kb on - strand, within DDA3937_RS00405 at 95.947 kb on - strand, within DDA3937_RS00405 at 95.952 kb on + strand, within DDA3937_RS00405 at 96.006 kb on + strand, within DDA3937_RS00405 at 96.144 kb on + strand, within DDA3937_RS00405 at 96.145 kb on - strand, within DDA3937_RS00405 at 96.180 kb on + strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.181 kb on - strand, within DDA3937_RS00405 at 96.297 kb on + strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.298 kb on - strand, within DDA3937_RS00405 at 96.314 kb on + strand, within DDA3937_RS00405 at 96.315 kb on - strand, within DDA3937_RS00405 at 96.514 kb on + strand at 96.514 kb on + strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.515 kb on - strand at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.738 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.295 kb on - strand, within DDA3937_RS00410 at 97.311 kb on + strand, within DDA3937_RS00410 at 97.425 kb on + strand at 97.426 kb on - strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 94,588 + DDA3937_RS00400 0.46 +4.4 94,589 - DDA3937_RS00400 0.46 -0.6 94,594 - DDA3937_RS00400 0.47 +1.3 94,624 - DDA3937_RS00400 0.49 -3.0 94,624 - DDA3937_RS00400 0.49 -2.2 94,624 - DDA3937_RS00400 0.49 +3.1 94,624 - DDA3937_RS00400 0.49 +0.5 94,768 - DDA3937_RS00400 0.57 +0.1 95,025 + DDA3937_RS00400 0.73 -1.2 95,026 - DDA3937_RS00400 0.73 -0.3 95,026 - DDA3937_RS00400 0.73 +2.3 95,097 + DDA3937_RS00400 0.77 -0.1 95,280 + DDA3937_RS00400 0.88 -0.6 95,280 + DDA3937_RS00400 0.88 -2.3 95,281 - DDA3937_RS00400 0.88 -3.1 95,281 - DDA3937_RS00400 0.88 +0.3 95,281 - DDA3937_RS00400 0.88 -2.2 95,370 + -0.7 95,435 + +2.9 95,435 + -1.1 95,436 - +1.7 95,436 - -3.4 95,436 - -1.5 95,481 + +0.5 95,481 + -1.7 95,481 + -1.5 95,482 - -2.5 95,493 + -2.0 95,493 + -0.9 95,493 + +0.5 95,493 + -1.3 95,494 - +0.1 95,494 - -3.1 95,494 - +1.7 95,494 - -0.9 95,526 + -0.7 95,526 + -2.4 95,527 - -1.7 95,527 - +2.6 95,527 - -2.1 95,613 + DDA3937_RS00405 0.13 -1.5 95,614 - DDA3937_RS00405 0.13 -0.2 95,709 - DDA3937_RS00405 0.23 -0.9 95,709 - DDA3937_RS00405 0.23 +2.4 95,934 + DDA3937_RS00405 0.47 +1.1 95,934 + DDA3937_RS00405 0.47 +2.2 95,934 + DDA3937_RS00405 0.47 +0.5 95,935 - DDA3937_RS00405 0.47 +0.6 95,935 - DDA3937_RS00405 0.47 -2.5 95,935 - DDA3937_RS00405 0.47 -1.8 95,935 - DDA3937_RS00405 0.47 +1.3 95,935 - DDA3937_RS00405 0.47 -0.3 95,935 - DDA3937_RS00405 0.47 +1.7 95,935 - DDA3937_RS00405 0.47 -2.9 95,935 - DDA3937_RS00405 0.47 +0.2 95,935 - DDA3937_RS00405 0.47 -3.0 95,947 - DDA3937_RS00405 0.48 +1.5 95,952 + DDA3937_RS00405 0.48 +0.2 96,006 + DDA3937_RS00405 0.54 -0.9 96,144 + DDA3937_RS00405 0.68 +1.1 96,145 - DDA3937_RS00405 0.69 +1.1 96,180 + DDA3937_RS00405 0.72 +0.9 96,181 - DDA3937_RS00405 0.72 +1.4 96,181 - DDA3937_RS00405 0.72 -1.5 96,181 - DDA3937_RS00405 0.72 -1.5 96,181 - DDA3937_RS00405 0.72 -0.9 96,181 - DDA3937_RS00405 0.72 +1.4 96,297 + DDA3937_RS00405 0.84 +0.9 96,298 - DDA3937_RS00405 0.84 -0.7 96,298 - DDA3937_RS00405 0.84 +0.6 96,298 - DDA3937_RS00405 0.84 -1.7 96,298 - DDA3937_RS00405 0.84 -1.9 96,298 - DDA3937_RS00405 0.84 -3.1 96,314 + DDA3937_RS00405 0.86 +1.3 96,315 - DDA3937_RS00405 0.86 -1.0 96,514 + +0.2 96,514 + -2.9 96,515 - +0.0 96,515 - -0.8 96,515 - +0.7 96,515 - +0.2 96,515 - -0.9 96,515 - -0.9 96,736 + DDA3937_RS00410 0.26 +2.6 96,736 + DDA3937_RS00410 0.26 +3.0 96,736 + DDA3937_RS00410 0.26 +1.6 96,736 + DDA3937_RS00410 0.26 +2.7 96,736 + DDA3937_RS00410 0.26 +0.2 96,736 + DDA3937_RS00410 0.26 +0.6 96,736 + DDA3937_RS00410 0.26 -1.1 96,737 - DDA3937_RS00410 0.26 -0.8 96,737 - DDA3937_RS00410 0.26 -0.1 96,738 + DDA3937_RS00410 0.26 +1.4 97,219 + DDA3937_RS00410 0.72 +0.7 97,219 + DDA3937_RS00410 0.72 +1.0 97,219 + DDA3937_RS00410 0.72 -0.4 97,219 + DDA3937_RS00410 0.72 +0.8 97,295 - DDA3937_RS00410 0.79 -0.3 97,311 + DDA3937_RS00410 0.81 -0.3 97,425 + -0.4 97,426 - +0.5 97,445 + -0.7 97,445 + -2.6 97,445 + -0.3 97,445 + +2.0 97,445 + -0.9 97,445 + -0.9 97,445 + -0.3 97,446 - -1.3 97,446 - +0.1 97,446 - +1.3 97,446 - +0.5
Or see this region's nucleotide sequence