Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00300

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
69,233	+		DDA3937_RS00295	0.19	-0.9
69,233	+		DDA3937_RS00295	0.19	+0.6
69,234	-		DDA3937_RS00295	0.19	+1.0
69,234	-		DDA3937_RS00295	0.19	-2.3
69,234	-		DDA3937_RS00295	0.19	-0.5
69,234	-		DDA3937_RS00295	0.19	-1.0
69,235	+		DDA3937_RS00295	0.19	+0.7
69,235	+		DDA3937_RS00295	0.19	-0.3
69,235	+		DDA3937_RS00295	0.19	-1.8
69,235	+		DDA3937_RS00295	0.19	-1.9
69,235	+		DDA3937_RS00295	0.19	-0.9
69,235	+		DDA3937_RS00295	0.19	-2.2
69,235	+		DDA3937_RS00295	0.19	+1.0
69,235	+		DDA3937_RS00295	0.19	+2.1
69,235	+		DDA3937_RS00295	0.19	-0.6
69,235	+		DDA3937_RS00295	0.19	-1.3
69,235	+		DDA3937_RS00295	0.19	-1.7
69,236	-		DDA3937_RS00295	0.19	+0.8
69,236	-		DDA3937_RS00295	0.19	-0.8
69,236	-		DDA3937_RS00295	0.19	-0.3
69,236	-		DDA3937_RS00295	0.19	+0.1
69,247	+		DDA3937_RS00295	0.20	-2.4
69,248	-		DDA3937_RS00295	0.21	+1.5
69,494	+		DDA3937_RS00295	0.43	-0.0
69,495	-		DDA3937_RS00295	0.43	+0.4
69,496	+		DDA3937_RS00295	0.43	+2.6
69,496	+		DDA3937_RS00295	0.43	+0.0
69,496	+		DDA3937_RS00295	0.43	-1.7
69,496	+		DDA3937_RS00295	0.43	-2.3
69,496	+		DDA3937_RS00295	0.43	+0.6
69,497	-		DDA3937_RS00295	0.43	-0.7
69,497	-		DDA3937_RS00295	0.43	-1.5
69,497	-		DDA3937_RS00295	0.43	+0.9
69,497	-		DDA3937_RS00295	0.43	-3.4
69,497	-		DDA3937_RS00295	0.43	+0.7
69,497	-		DDA3937_RS00295	0.43	-3.8
69,497	-		DDA3937_RS00295	0.43	-3.7
69,497	-		DDA3937_RS00295	0.43	-0.7
69,497	-		DDA3937_RS00295	0.43	-1.1
69,497	-		DDA3937_RS00295	0.43	+1.7
69,503	-		DDA3937_RS00295	0.44	-0.7
69,624	+		DDA3937_RS00295	0.55	-0.2
69,624	+		DDA3937_RS00295	0.55	+1.4
69,624	+		DDA3937_RS00295	0.55	-0.9
69,624	+				+0.7
69,624	+		DDA3937_RS00295	0.55	+0.5
69,841	+		DDA3937_RS00295	0.74	-2.1
69,841	+		DDA3937_RS00295	0.74	-1.7
69,841	+		DDA3937_RS00295	0.74	-0.2
69,841	+		DDA3937_RS00295	0.74	+0.1
69,895	+		DDA3937_RS00295	0.79	-2.4
69,895	+		DDA3937_RS00295	0.79	-0.0
69,895	+		DDA3937_RS00295	0.79	-2.5
69,895	+		DDA3937_RS00295	0.79	-0.0
69,896	-		DDA3937_RS00295	0.79	+0.8
69,978	+		DDA3937_RS00295	0.87	+0.1
69,978	+		DDA3937_RS00295	0.87	-3.1
69,978	+		DDA3937_RS00295	0.87	+0.1
69,979	-		DDA3937_RS00295	0.87	-2.2
69,979	-		DDA3937_RS00295	0.87	-0.3
70,180	-				-1.1
70,185	-				-0.7
70,185	-				-2.9
70,189	-				-0.9
70,189	-				-1.9
70,209	+				-2.0
70,209	+				+0.4
70,259	+				-0.7
70,332	+				-2.6
70,332	+				+1.8
70,332	+				-1.1
70,332	+				-2.5
70,561	+		DDA3937_RS00300	0.25	-0.2
70,587	+		DDA3937_RS00300	0.26	+1.7
70,606	+		DDA3937_RS00300	0.28	-0.4
70,606	+		DDA3937_RS00300	0.28	-3.2
70,607	-		DDA3937_RS00300	0.28	+0.5
70,607	-		DDA3937_RS00300	0.28	+0.1
70,645	+		DDA3937_RS00300	0.31	+0.5
70,645	+		DDA3937_RS00300	0.31	+1.9
70,660	+		DDA3937_RS00300	0.32	-0.2
70,660	+		DDA3937_RS00300	0.32	-2.0
70,660	+		DDA3937_RS00300	0.32	-3.4
70,744	-		DDA3937_RS00300	0.38	+2.0
70,820	+		DDA3937_RS00300	0.43	-0.3
70,820	+		DDA3937_RS00300	0.43	+1.6
70,821	-		DDA3937_RS00300	0.43	+0.9
70,821	-		DDA3937_RS00300	0.43	+0.8
70,876	+		DDA3937_RS00300	0.47	-0.7
71,153	-		DDA3937_RS00300	0.68	-3.7
71,153	-		DDA3937_RS00300	0.68	-0.7
71,153	-		DDA3937_RS00300	0.68	+1.9
71,233	+		DDA3937_RS00300	0.74	-3.1
71,233	+		DDA3937_RS00300	0.74	-1.7
71,257	+		DDA3937_RS00300	0.75	+2.9
71,303	-		DDA3937_RS00300	0.79	-2.3
71,305	+		DDA3937_RS00300	0.79	+0.4
71,305	+		DDA3937_RS00300	0.79	+0.1
71,305	+		DDA3937_RS00300	0.79	+1.4
71,305	+		DDA3937_RS00300	0.79	-0.7
71,306	-		DDA3937_RS00300	0.79	-0.9
71,306	-		DDA3937_RS00300	0.79	+3.0
71,346	+		DDA3937_RS00300	0.82	+1.7
71,346	+		DDA3937_RS00300	0.82	-0.6
71,346	+		DDA3937_RS00300	0.82	+0.6
71,346	+		DDA3937_RS00300	0.82	-1.9
71,347	-		DDA3937_RS00300	0.82	+0.2
71,347	-		DDA3937_RS00300	0.82	-1.2
71,347	-		DDA3937_RS00300	0.82	+1.2
71,350	+		DDA3937_RS00300	0.82	-3.8
71,350	+		DDA3937_RS00300	0.82	+0.4
71,350	+		DDA3937_RS00300	0.82	+0.8
71,350	+		DDA3937_RS00300	0.82	-1.8
71,350	+		DDA3937_RS00300	0.82	+1.3
71,350	+		DDA3937_RS00300	0.82	+1.2
71,350	+		DDA3937_RS00300	0.82	+0.1
71,350	+		DDA3937_RS00300	0.82	+1.2
71,351	-		DDA3937_RS00300	0.82	+0.6
71,351	-		DDA3937_RS00300	0.82	-1.3
71,351	-		DDA3937_RS00300	0.82	+0.9
71,351	-		DDA3937_RS00300	0.82	+0.9
71,351	-		DDA3937_RS00300	0.82	+2.0
71,351	-		DDA3937_RS00300	0.82	+0.7
71,351	-		DDA3937_RS00300	0.82	+0.2
71,375	-		DDA3937_RS00300	0.84	+1.1
71,375	-		DDA3937_RS00300	0.84	-0.3
71,375	-		DDA3937_RS00300	0.84	-2.2
71,375	-		DDA3937_RS00300	0.84	-1.0
71,424	+		DDA3937_RS00300	0.87	+0.6
71,425	-		DDA3937_RS00300	0.88	+2.3
71,458	+		DDA3937_RS00300	0.90	+1.1
71,460	+				+0.7
71,649	-				-2.0
71,798	-		DDA3937_RS00305	0.16	-3.5
71,798	-		DDA3937_RS00305	0.16	+3.7
71,798	-		DDA3937_RS00305	0.16	-0.1
71,880	+		DDA3937_RS00305	0.25	+1.4
71,880	+		DDA3937_RS00305	0.25	-1.8
71,880	+		DDA3937_RS00305	0.25	+1.5
71,880	+		DDA3937_RS00305	0.25	+0.9
71,880	+		DDA3937_RS00305	0.25	-1.3
71,881	-		DDA3937_RS00305	0.25	-2.3
71,891	+		DDA3937_RS00305	0.26	+2.0
72,019	-		DDA3937_RS00305	0.40	-2.0
72,134	-		DDA3937_RS00305	0.53	+1.7
72,207	-		DDA3937_RS00305	0.61	-0.5
72,207	-		DDA3937_RS00305	0.61	+0.3
72,318	+		DDA3937_RS00305	0.73	+3.3
72,318	+		DDA3937_RS00305	0.73	+2.0
72,319	-		DDA3937_RS00305	0.73	+2.0
72,319	-		DDA3937_RS00305	0.73	-2.9
72,345	+		DDA3937_RS00305	0.76	-0.7
72,345	+		DDA3937_RS00305	0.76	-0.6
72,345	+		DDA3937_RS00305	0.76	-0.8
72,345	+		DDA3937_RS00305	0.76	-0.4
72,345	+		DDA3937_RS00305	0.76	-3.0
72,351	+		DDA3937_RS00305	0.76	-1.7
72,351	+		DDA3937_RS00305	0.76	+0.7
72,351	+		DDA3937_RS00305	0.76	-1.8
72,351	+		DDA3937_RS00305	0.76	+0.4
72,352	-		DDA3937_RS00305	0.77	-1.5
72,352	-		DDA3937_RS00305	0.77	-1.1
72,352	-		DDA3937_RS00305	0.77	-2.1
72,352	-		DDA3937_RS00305	0.77	+0.4
72,352	-		DDA3937_RS00305	0.77	-1.1
72,352	-		DDA3937_RS00305	0.77	-1.7
72,352	-		DDA3937_RS00305	0.77	-0.8
72,384	+		DDA3937_RS00305	0.80	-2.3
72,384	+		DDA3937_RS00305	0.80	+0.2
72,399	+		DDA3937_RS00305	0.82	+0.9
72,399	+		DDA3937_RS00305	0.82	-2.6
72,399	+		DDA3937_RS00305	0.82	+0.1
72,400	-		DDA3937_RS00305	0.82	+0.8
72,400	-		DDA3937_RS00305	0.82	+0.4
72,400	-		DDA3937_RS00305	0.82	+0.1
72,400	-		DDA3937_RS00305	0.82	-0.9
72,400	-		DDA3937_RS00305	0.82	+1.1
72,408	+		DDA3937_RS00305	0.83	+0.7
72,408	+		DDA3937_RS00305	0.83	+0.7
72,408	+		DDA3937_RS00305	0.83	-0.9
72,408	+		DDA3937_RS00305	0.83	-1.6
72,408	+		DDA3937_RS00305	0.83	+3.1
72,408	+		DDA3937_RS00305	0.83	-2.1
72,408	+		DDA3937_RS00305	0.83	+1.9
72,409	-		DDA3937_RS00305	0.83	+2.5
72,409	-		DDA3937_RS00305	0.83	-0.7
72,409	-		DDA3937_RS00305	0.83	-1.1
72,409	-		DDA3937_RS00305	0.83	-1.1
72,410	+		DDA3937_RS00305	0.83	-0.3
72,410	+		DDA3937_RS00305	0.83	-1.4
72,411	-		DDA3937_RS00305	0.83	-1.2
72,411	-		DDA3937_RS00305	0.83	-0.1
72,411	-		DDA3937_RS00305	0.83	+2.0
72,411	-		DDA3937_RS00305	0.83	+0.8
72,411	-		DDA3937_RS00305	0.83	-0.5
72,411	-		DDA3937_RS00305	0.83	-2.3
72,414	+		DDA3937_RS00305	0.83	+0.3
72,414	+		DDA3937_RS00305	0.83	-0.7
72,537	-				+2.1