Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00270 and DDA3937_RS00275 are separated by 422 nucleotides DDA3937_RS00275 and DDA3937_RS00280 overlap by 1 nucleotides DDA3937_RS00280 and DDA3937_RS00285 are separated by 376 nucleotides DDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotides
DDA3937_RS00270: DDA3937_RS00270 - hypothetical protein, at 64,272 to 65,327
_RS00270
DDA3937_RS00275: DDA3937_RS00275 - GNAT family N-acetyltransferase, at 65,750 to 66,100
_RS00275
DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473
_RS00280
DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131
_RS00285
DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576
_RS00290
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 65.122 kb on - strand, within DDA3937_RS00270 at 65.214 kb on - strand, within DDA3937_RS00270 at 65.214 kb on - strand, within DDA3937_RS00270 at 65.264 kb on + strand at 65.277 kb on + strand at 65.277 kb on + strand at 65.278 kb on - strand at 65.278 kb on - strand at 65.431 kb on + strand at 65.452 kb on - strand at 65.460 kb on - strand at 65.473 kb on + strand at 65.480 kb on - strand at 65.480 kb on - strand at 65.480 kb on - strand at 65.482 kb on - strand at 65.491 kb on - strand at 65.491 kb on - strand at 65.491 kb on - strand at 65.518 kb on - strand at 65.518 kb on - strand at 65.520 kb on + strand at 65.521 kb on - strand at 65.521 kb on - strand at 65.654 kb on - strand at 65.747 kb on + strand at 65.749 kb on + strand at 65.749 kb on + strand at 65.749 kb on + strand at 65.749 kb on + strand at 65.844 kb on + strand, within DDA3937_RS00275 at 65.943 kb on + strand, within DDA3937_RS00275 at 65.944 kb on - strand, within DDA3937_RS00275 at 65.944 kb on - strand, within DDA3937_RS00275 at 65.944 kb on - strand, within DDA3937_RS00275 at 65.944 kb on - strand, within DDA3937_RS00275 at 66.006 kb on + strand at 66.007 kb on - strand, within DDA3937_RS00275 at 66.007 kb on - strand, within DDA3937_RS00275 at 66.007 kb on - strand, within DDA3937_RS00275 at 66.082 kb on + strand at 66.115 kb on - strand at 66.198 kb on + strand at 66.198 kb on + strand at 66.199 kb on - strand at 66.199 kb on - strand at 66.199 kb on - strand at 66.380 kb on + strand, within DDA3937_RS00280 at 66.381 kb on - strand, within DDA3937_RS00280 at 66.383 kb on + strand, within DDA3937_RS00280 at 66.383 kb on + strand, within DDA3937_RS00280 at 66.383 kb on + strand, within DDA3937_RS00280 at 66.383 kb on + strand, within DDA3937_RS00280 at 66.383 kb on + strand, within DDA3937_RS00280 at 66.384 kb on - strand, within DDA3937_RS00280 at 66.406 kb on - strand, within DDA3937_RS00280 at 66.512 kb on + strand, within DDA3937_RS00280 at 66.512 kb on + strand, within DDA3937_RS00280 at 66.634 kb on + strand, within DDA3937_RS00280 at 66.635 kb on - strand, within DDA3937_RS00280 at 66.635 kb on - strand, within DDA3937_RS00280 at 66.638 kb on + strand, within DDA3937_RS00280 at 66.638 kb on + strand, within DDA3937_RS00280 at 66.639 kb on - strand, within DDA3937_RS00280 at 66.639 kb on - strand, within DDA3937_RS00280 at 66.639 kb on - strand, within DDA3937_RS00280 at 66.757 kb on - strand, within DDA3937_RS00280 at 66.816 kb on - strand, within DDA3937_RS00280 at 66.827 kb on + strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.091 kb on + strand, within DDA3937_RS00280 at 67.092 kb on - strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.452 kb on + strand at 67.452 kb on + strand at 67.453 kb on - strand at 67.457 kb on + strand at 67.458 kb on - strand at 67.458 kb on - strand at 67.459 kb on + strand at 67.460 kb on - strand at 67.475 kb on - strand at 67.526 kb on + strand at 67.609 kb on - strand at 67.614 kb on + strand at 67.633 kb on + strand at 67.692 kb on + strand at 67.719 kb on - strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.820 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.912 kb on + strand, within DDA3937_RS00285 at 67.913 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.259 kb on + strand at 68.401 kb on + strand, within DDA3937_RS00290 at 68.401 kb on + strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 65,122 - DDA3937_RS00270 0.80 -3.0 65,214 - DDA3937_RS00270 0.89 -0.6 65,214 - DDA3937_RS00270 0.89 +1.1 65,264 + -1.0 65,277 + +0.9 65,277 + +0.8 65,278 - -1.1 65,278 - +1.4 65,431 + -0.7 65,452 - -0.3 65,460 - -4.3 65,473 + -1.2 65,480 - -0.5 65,480 - +0.7 65,480 - -2.6 65,482 - +1.3 65,491 - +2.6 65,491 - +0.6 65,491 - -3.4 65,518 - -2.1 65,518 - -1.7 65,520 + -2.1 65,521 - +2.7 65,521 - +0.4 65,654 - -1.8 65,747 + +0.1 65,749 + +2.3 65,749 + -1.5 65,749 + -0.9 65,749 + -1.5 65,844 + DDA3937_RS00275 0.27 +0.6 65,943 + DDA3937_RS00275 0.55 -1.3 65,944 - DDA3937_RS00275 0.55 +0.8 65,944 - DDA3937_RS00275 0.55 +1.7 65,944 - DDA3937_RS00275 0.55 +2.4 65,944 - DDA3937_RS00275 0.55 +1.1 66,006 + +1.1 66,007 - DDA3937_RS00275 0.73 -1.5 66,007 - DDA3937_RS00275 0.73 -2.0 66,007 - DDA3937_RS00275 0.73 +0.1 66,082 + -3.3 66,115 - +4.1 66,198 + -0.7 66,198 + -1.7 66,199 - +0.3 66,199 - +2.1 66,199 - -2.5 66,380 + DDA3937_RS00280 0.20 +0.7 66,381 - DDA3937_RS00280 0.20 -0.0 66,383 + DDA3937_RS00280 0.21 +0.2 66,383 + DDA3937_RS00280 0.21 -0.4 66,383 + DDA3937_RS00280 0.21 -1.3 66,383 + DDA3937_RS00280 0.21 -2.7 66,383 + DDA3937_RS00280 0.21 -3.2 66,384 - DDA3937_RS00280 0.21 +0.9 66,406 - DDA3937_RS00280 0.22 +1.9 66,512 + DDA3937_RS00280 0.30 -1.3 66,512 + DDA3937_RS00280 0.30 -3.0 66,634 + DDA3937_RS00280 0.39 +0.1 66,635 - DDA3937_RS00280 0.39 +2.2 66,635 - DDA3937_RS00280 0.39 +0.6 66,638 + DDA3937_RS00280 0.39 -2.9 66,638 + DDA3937_RS00280 0.39 -2.3 66,639 - DDA3937_RS00280 0.39 +1.4 66,639 - DDA3937_RS00280 0.39 +2.2 66,639 - DDA3937_RS00280 0.39 +1.6 66,757 - DDA3937_RS00280 0.48 +0.5 66,816 - DDA3937_RS00280 0.52 +1.5 66,827 + DDA3937_RS00280 0.53 -1.8 67,080 - DDA3937_RS00280 0.71 +0.2 67,080 - DDA3937_RS00280 0.71 -2.8 67,080 - DDA3937_RS00280 0.71 -1.3 67,091 + DDA3937_RS00280 0.72 -3.2 67,092 - DDA3937_RS00280 0.72 -2.3 67,150 + DDA3937_RS00280 0.76 +0.6 67,150 + DDA3937_RS00280 0.76 +2.3 67,150 + DDA3937_RS00280 0.76 +1.1 67,151 - DDA3937_RS00280 0.76 -1.4 67,151 - DDA3937_RS00280 0.76 -0.3 67,452 + -1.8 67,452 + -0.7 67,453 - +0.6 67,457 + -3.4 67,458 - -0.7 67,458 - +2.7 67,459 + -0.5 67,460 - +0.1 67,475 - +2.5 67,526 + +1.1 67,609 - +1.6 67,614 + -2.7 67,633 + +0.4 67,692 + -1.6 67,719 - -1.6 67,775 + +0.1 67,775 + +1.3 67,775 + -0.1 67,776 - -2.5 67,776 - -0.7 67,776 - -2.8 67,820 + -2.0 67,845 + +1.3 67,845 + +2.5 67,845 + +0.1 67,845 + +2.9 67,845 + -0.9 67,846 - +1.3 67,846 - -1.1 67,846 - +0.3 67,846 - -1.1 67,846 - +0.7 67,846 - +1.1 67,857 + -1.7 67,857 + +0.5 67,857 + +0.5 67,857 + +1.1 67,912 + DDA3937_RS00285 0.22 -1.1 67,913 - DDA3937_RS00285 0.22 -0.9 67,992 - DDA3937_RS00285 0.50 -3.1 67,992 - DDA3937_RS00285 0.50 +1.5 68,053 + DDA3937_RS00285 0.72 -0.0 68,053 + DDA3937_RS00285 0.72 -1.5 68,053 + DDA3937_RS00285 0.72 +1.4 68,053 + DDA3937_RS00285 0.72 -2.9 68,053 + DDA3937_RS00285 0.72 +0.7 68,053 + DDA3937_RS00285 0.72 -0.9 68,053 + DDA3937_RS00285 0.72 -0.7 68,053 + DDA3937_RS00285 0.72 -1.5 68,054 - DDA3937_RS00285 0.72 +1.6 68,054 - DDA3937_RS00285 0.72 -2.9 68,054 - DDA3937_RS00285 0.72 -0.3 68,054 - DDA3937_RS00285 0.72 -0.6 68,054 - DDA3937_RS00285 0.72 +0.3 68,054 - DDA3937_RS00285 0.72 -0.8 68,259 + -1.9 68,401 + DDA3937_RS00290 0.34 -1.5 68,401 + DDA3937_RS00290 0.34 -0.1 68,402 - DDA3937_RS00290 0.34 -0.6 68,402 - DDA3937_RS00290 0.34 -0.2 68,402 - DDA3937_RS00290 0.34 +0.5 68,402 - DDA3937_RS00290 0.34 -0.7
Or see this region's nucleotide sequence