Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22350

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,160,919	+		DDA3937_RS13895	0.28	-1.4
3,160,919	+		DDA3937_RS13895	0.28	+0.5
3,160,919	+		DDA3937_RS13895	0.28	-1.1
3,160,919	+		DDA3937_RS13895	0.28	-2.3
3,160,919	+				-0.8
3,160,919	+		DDA3937_RS13895	0.28	-1.5
3,160,920	-		DDA3937_RS13895	0.28	+0.1
3,160,920	-		DDA3937_RS13895	0.28	-1.1
3,160,920	-		DDA3937_RS13895	0.28	-0.3
3,160,920	-		DDA3937_RS13895	0.28	-2.7
3,160,974	-		DDA3937_RS13895	0.32	-1.3
3,160,974	-		DDA3937_RS13895	0.32	-1.0
3,161,059	+		DDA3937_RS13895	0.39	-1.8
3,161,059	+		DDA3937_RS13895	0.39	-2.1
3,161,059	+		DDA3937_RS13895	0.39	+0.5
3,161,059	+		DDA3937_RS13895	0.39	-1.9
3,161,059	+		DDA3937_RS13895	0.39	-0.2
3,161,059	+		DDA3937_RS13895	0.39	-2.3
3,161,060	-		DDA3937_RS13895	0.39	+1.3
3,161,060	-		DDA3937_RS13895	0.39	-3.1
3,161,060	-		DDA3937_RS13895	0.39	-0.7
3,161,060	-		DDA3937_RS13895	0.39	-2.1
3,161,102	+		DDA3937_RS13895	0.43	-1.3
3,161,102	+		DDA3937_RS13895	0.43	+2.8
3,161,102	+		DDA3937_RS13895	0.43	-2.6
3,161,103	-		DDA3937_RS13895	0.43	+1.9
3,161,103	-		DDA3937_RS13895	0.43	-1.8
3,161,103	-		DDA3937_RS13895	0.43	+0.3
3,161,103	-		DDA3937_RS13895	0.43	+0.5
3,161,122	-		DDA3937_RS13895	0.44	-1.1
3,161,169	+		DDA3937_RS13895	0.48	-2.3
3,161,274	+		DDA3937_RS13895	0.57	+1.1
3,161,274	+		DDA3937_RS13895	0.57	-1.2
3,161,275	-		DDA3937_RS13895	0.57	-1.3
3,161,275	-		DDA3937_RS13895	0.57	+0.7
3,161,276	+		DDA3937_RS13895	0.57	+0.7
3,161,276	+		DDA3937_RS13895	0.57	-0.5
3,161,276	+		DDA3937_RS13895	0.57	-0.5
3,161,277	-		DDA3937_RS13895	0.57	+2.3
3,161,277	-		DDA3937_RS13895	0.57	-0.2
3,161,277	-		DDA3937_RS13895	0.57	-0.8
3,161,277	-		DDA3937_RS13895	0.57	+1.4
3,161,277	-		DDA3937_RS13895	0.57	-1.7
3,161,284	-		DDA3937_RS13895	0.57	-1.7
3,161,319	+		DDA3937_RS13895	0.60	-0.5
3,161,320	-		DDA3937_RS13895	0.60	-0.3
3,161,347	+		DDA3937_RS13895	0.62	-5.1
3,161,376	+		DDA3937_RS13895	0.65	-0.8
3,161,376	+		DDA3937_RS13895	0.65	+0.4
3,161,376	+		DDA3937_RS13895	0.65	-1.0
3,161,376	+		DDA3937_RS13895	0.65	-1.8
3,161,377	-				+0.5
3,161,377	-		DDA3937_RS13895	0.65	-1.5
3,161,377	-		DDA3937_RS13895	0.65	+0.1
3,161,400	+		DDA3937_RS13895	0.67	-0.1
3,161,400	+		DDA3937_RS13895	0.67	-3.1
3,161,401	-		DDA3937_RS13895	0.67	+2.8
3,161,428	-				-0.5
3,161,439	+		DDA3937_RS13895	0.70	-1.8
3,161,439	+		DDA3937_RS13895	0.70	-0.1
3,161,439	+		DDA3937_RS13895	0.70	-0.6
3,161,439	+		DDA3937_RS13895	0.70	+3.7
3,161,440	-		DDA3937_RS13895	0.70	+1.0
3,161,440	-		DDA3937_RS13895	0.70	-2.1
3,161,440	-		DDA3937_RS13895	0.70	+0.5
3,161,460	+		DDA3937_RS13895	0.72	-0.7
3,161,475	+		DDA3937_RS13895	0.73	-0.4
3,161,476	-		DDA3937_RS13895	0.73	-1.9
3,161,476	-		DDA3937_RS13895	0.73	-0.2
3,161,500	+		DDA3937_RS13895	0.75	-0.8
3,161,509	-		DDA3937_RS13895	0.76	+0.5
3,161,549	+		DDA3937_RS13895	0.79	-1.5
3,161,549	+		DDA3937_RS13895	0.79	-2.9
3,161,626	+		DDA3937_RS13895	0.85	-1.5
3,161,626	+		DDA3937_RS13895	0.85	-0.9
3,161,627	-				-0.1
3,161,627	-		DDA3937_RS13895	0.85	+1.7
3,161,641	+		DDA3937_RS13895	0.86	-1.3
3,161,642	-		DDA3937_RS13895	0.86	-2.0
3,161,642	-		DDA3937_RS13895	0.86	-1.3
3,161,645	-		DDA3937_RS13895	0.87	+0.7
3,161,645	-		DDA3937_RS13895	0.87	-1.5
3,161,722	+				+0.6
3,161,723	-				+1.1
3,161,749	+				-0.5
3,161,750	-				-2.8
3,161,764	+				-2.9
3,161,768	+				-2.7
3,161,769	-				-1.8
3,161,809	+				-0.1
3,161,853	-				-1.7
3,161,859	+				-2.2
3,161,871	-				-1.6
3,161,871	-				+1.5
3,161,873	-				-1.5
3,161,875	+				-0.8
3,161,880	+				-0.5
3,161,933	+				-2.4
3,161,950	+				-1.1
3,161,952	+				-1.5
3,161,952	+				-1.1
3,161,953	-				-1.7
3,161,953	-				+0.2
3,161,953	-				-1.3
3,161,993	+		DDA3937_RS22350	0.12	-1.7
3,161,993	+				-0.5
3,162,006	+		DDA3937_RS22350	0.13	-0.8
3,162,007	-		DDA3937_RS22350	0.13	-2.4
3,162,007	-		DDA3937_RS22350	0.13	-3.2
3,162,007	-		DDA3937_RS22350	0.13	-2.5
3,162,007	-		DDA3937_RS22350	0.13	+0.1
3,162,007	-		DDA3937_RS22350	0.13	-2.3
3,162,184	+		DDA3937_RS22350	0.32	-2.5
3,162,189	+		DDA3937_RS22350	0.32	-1.4
3,162,252	+		DDA3937_RS22350	0.39	-0.8
3,162,252	+		DDA3937_RS22350	0.39	-2.8
3,162,264	+		DDA3937_RS22350	0.40	-0.4
3,162,265	-		DDA3937_RS22350	0.40	+0.8
3,162,280	+		DDA3937_RS22350	0.42	-1.3
3,162,281	-		DDA3937_RS22350	0.42	-2.4
3,162,328	+		DDA3937_RS22350	0.47	-2.2
3,162,329	-		DDA3937_RS22350	0.47	-1.1
3,162,329	-		DDA3937_RS22350	0.47	+0.1
3,162,397	-		DDA3937_RS22350	0.54	-0.8
3,162,546	+		DDA3937_RS22350	0.70	-1.1
3,162,561	-		DDA3937_RS22350	0.71	-1.1
3,162,726	+		DDA3937_RS22350	0.88	-1.9
3,162,726	+		DDA3937_RS22350	0.88	+0.5
3,162,739	-		DDA3937_RS22350	0.90	-2.3
3,162,784	+				-2.7
3,162,839	-				-0.8
3,162,870	-				-3.7
3,162,885	+				-1.8
3,163,063	+				-1.3
3,163,189	-		DDA3937_RS23495	0.25	+0.5
3,163,289	+		DDA3937_RS23495	0.41	+0.4
3,163,290	-		DDA3937_RS23495	0.41	+0.9
3,163,290	-		DDA3937_RS23495	0.41	-2.8
3,163,396	-		DDA3937_RS23495	0.57	-0.8
3,163,403	-		DDA3937_RS23495	0.58	-3.1
3,163,573	-		DDA3937_RS23495	0.85	-1.3
3,163,645	-				+1.6
3,163,704	+				+1.9
3,163,707	-				-1.0
3,163,720	+				+1.8
3,163,721	-				-0.3
3,163,721	-				+0.5
3,163,724	+				-2.0
3,163,724	+				-2.5
3,163,725	-				-2.6
3,163,726	+				+3.5
3,163,727	-				+0.0
3,163,727	-				-1.1
3,163,727	-				+0.4
3,163,727	-				-1.8
3,163,727	-				-0.5
3,163,733	+				-0.6
3,163,734	-				-3.3
3,163,734	-				-0.6
3,163,836	+				+0.2
3,163,837	-				+0.2