Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22190

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,069,576	+				-1.3
2,069,605	+				+1.2
2,069,605	+				+0.9
2,069,605	+				-1.2
2,069,605	+				-2.5
2,069,606	-				-0.5
2,069,618	-				-3.2
2,069,618	-				-1.9
2,069,618	-				-0.8
2,069,669	+				-1.4
2,069,687	+				+2.3
2,069,703	+				-1.4
2,069,709	+				-1.1
2,069,891	-		DDA3937_RS09210	0.39	-2.9
2,069,961	+		DDA3937_RS09210	0.51	-0.5
2,069,962	-		DDA3937_RS09210	0.51	+1.4
2,069,962	-		DDA3937_RS09210	0.51	-0.2
2,069,962	-		DDA3937_RS09210	0.51	-1.3
2,069,962	-		DDA3937_RS09210	0.51	-1.9
2,069,963	+				-0.1
2,069,964	-		DDA3937_RS09210	0.52	-0.9
2,069,972	+		DDA3937_RS09210	0.53	+1.8
2,069,973	-		DDA3937_RS09210	0.53	-1.9
2,069,973	-		DDA3937_RS09210	0.53	-2.6
2,069,988	+		DDA3937_RS09210	0.56	-1.3
2,069,988	+		DDA3937_RS09210	0.56	-2.1
2,069,989	-		DDA3937_RS09210	0.56	-1.3
2,069,996	+		DDA3937_RS09210	0.57	-1.0
2,069,996	+		DDA3937_RS09210	0.57	+0.4
2,069,996	+		DDA3937_RS09210	0.57	+0.7
2,069,996	+		DDA3937_RS09210	0.57	-1.1
2,069,996	+		DDA3937_RS09210	0.57	+0.3
2,069,996	+		DDA3937_RS09210	0.57	+1.8
2,069,997	-		DDA3937_RS09210	0.57	-0.8
2,069,997	-		DDA3937_RS09210	0.57	-1.5
2,069,997	-		DDA3937_RS09210	0.57	+0.6
2,069,997	-		DDA3937_RS09210	0.57	+0.9
2,070,012	+		DDA3937_RS09210	0.60	+1.1
2,070,015	-		DDA3937_RS09210	0.61	-1.3
2,070,015	-		DDA3937_RS09210	0.61	+0.7
2,070,015	-		DDA3937_RS09210	0.61	+1.5
2,070,060	+		DDA3937_RS09210	0.68	-1.5
2,070,061	-		DDA3937_RS09210	0.69	+0.7
2,070,086	-		DDA3937_RS09210	0.73	-1.6
2,070,169	-		DDA3937_RS09210	0.87	+1.1
2,070,190	-				-0.0
2,070,190	-				-2.4
2,070,190	-				+0.1
2,070,190	-				+1.2
2,070,197	+				-2.5
2,070,197	+				-1.7
2,070,198	-				+1.9
2,070,198	-				-1.9
2,070,198	-				+1.8
2,070,198	-				-2.4
2,070,198	-				+0.9
2,070,198	-				-1.5
2,070,247	+				-1.1
2,070,247	+				+1.9
2,070,247	+				-2.4
2,070,247	+				+1.0
2,070,247	+				-2.0
2,070,247	+				-0.5
2,070,248	-				-1.1
2,070,248	-				+1.8
2,070,248	-				-0.5
2,070,248	-				-1.1
2,070,252	+				-2.6
2,070,252	+				-3.0
2,070,253	-				-0.2
2,070,253	-				-2.5
2,070,253	-				+0.8
2,070,253	-				+0.8
2,070,253	-				-0.5
2,070,253	-				-0.9
2,070,256	+				-0.7
2,070,257	-				-0.7
2,070,370	+		DDA3937_RS23470	0.36	-0.5
2,070,371	-		DDA3937_RS23470	0.36	-1.0
2,070,373	+		DDA3937_RS23470	0.37	-2.4
2,070,373	+		DDA3937_RS23470	0.37	-1.7
2,070,373	+		DDA3937_RS23470	0.37	+1.1
2,070,401	+		DDA3937_RS23470	0.45	-1.3
2,070,401	+		DDA3937_RS23470	0.45	-0.4
2,070,402	-		DDA3937_RS23470	0.46	-0.8
2,070,402	-		DDA3937_RS23470	0.46	-2.5
2,070,402	-		DDA3937_RS23470	0.46	-1.6
2,070,405	+		DDA3937_RS23470	0.47	-1.9
2,070,405	+		DDA3937_RS23470	0.47	-2.6
2,070,406	-		DDA3937_RS23470	0.47	-0.1
2,070,406	-		DDA3937_RS23470	0.47	+2.6
2,070,406	-		DDA3937_RS23470	0.47	-2.3
2,070,431	+		DDA3937_RS23470	0.55	-2.7
2,070,473	+		DDA3937_RS23470	0.67	-0.7
2,070,524	+				-1.1
2,070,525	-				+2.7
2,070,525	-				-0.8
2,070,586	+		DDA3937_RS22190	0.42	-1.5
2,070,587	-		DDA3937_RS22190	0.42	-1.1
2,070,596	+		DDA3937_RS22190	0.45	+0.8
2,070,644	+		DDA3937_RS22190	0.64	+2.1
2,070,645	-		DDA3937_RS22190	0.65	-3.4
2,070,645	-		DDA3937_RS22190	0.65	-0.8
2,070,649	+		DDA3937_RS22190	0.66	+0.1
2,070,649	+		DDA3937_RS22190	0.66	-2.2
2,070,649	+		DDA3937_RS22190	0.66	-1.3
2,070,650	-		DDA3937_RS22190	0.67	-2.4
2,070,650	-		DDA3937_RS22190	0.67	-1.2
2,070,650	-		DDA3937_RS22190	0.67	-1.7
2,070,650	-		DDA3937_RS22190	0.67	-1.5
2,070,650	-		DDA3937_RS22190	0.67	-1.7
2,070,699	+				-0.5
2,070,700	-		DDA3937_RS22190	0.86	-1.3
2,070,700	-		DDA3937_RS22190	0.86	-0.8
2,070,700	-		DDA3937_RS22190	0.86	-2.1
2,070,749	+				-1.5
2,070,750	-				+0.5
2,070,759	+				-1.0
2,070,759	+				+1.0
2,070,760	-				-1.8
2,070,760	-				-1.4
2,070,760	-				-0.1
2,070,760	-				-1.1
2,070,762	+				-2.2
2,070,762	+				-0.8
2,070,762	+				-0.1
2,070,762	+				+0.1
2,070,762	+				-2.1
2,070,763	-				-1.9
2,070,815	-				-1.1
2,070,898	-		DDA3937_RS09215	0.17	-4.0
2,070,943	+		DDA3937_RS09215	0.23	-2.4
2,070,944	-		DDA3937_RS09215	0.23	-1.3
2,070,944	-		DDA3937_RS09215	0.23	-3.4
2,070,944	-		DDA3937_RS09215	0.23	-0.4
2,070,960	+		DDA3937_RS09215	0.25	-1.5
2,070,960	+		DDA3937_RS09215	0.25	-2.5
2,070,961	-		DDA3937_RS09215	0.25	-1.7
2,070,966	-		DDA3937_RS09215	0.26	-2.2
2,070,966	-		DDA3937_RS09215	0.26	-0.7
2,070,993	+		DDA3937_RS09215	0.30	-3.1
2,070,994	-		DDA3937_RS09215	0.30	-2.3
2,070,994	-		DDA3937_RS09215	0.30	+0.3
2,070,994	-		DDA3937_RS09215	0.30	-0.0
2,071,006	+		DDA3937_RS09215	0.31	+2.2
2,071,064	+		DDA3937_RS09215	0.39	+0.1
2,071,064	+		DDA3937_RS09215	0.39	+0.5
2,071,065	-		DDA3937_RS09215	0.39	-0.7
2,071,072	-		DDA3937_RS09215	0.40	-1.5
2,071,147	+		DDA3937_RS09215	0.50	+2.1
2,071,148	-		DDA3937_RS09215	0.50	+0.1
2,071,148	-		DDA3937_RS09215	0.50	-1.5
2,071,148	-		DDA3937_RS09215	0.50	+1.0
2,071,148	-		DDA3937_RS09215	0.50	-0.5
2,071,149	+		DDA3937_RS09215	0.50	-2.6
2,071,149	+		DDA3937_RS09215	0.50	-1.5
2,071,216	+		DDA3937_RS09215	0.59	+1.5
2,071,216	+		DDA3937_RS09215	0.59	-1.3
2,071,216	+		DDA3937_RS09215	0.59	+1.0
2,071,217	-		DDA3937_RS09215	0.59	-1.9
2,071,217	-		DDA3937_RS09215	0.59	+0.0
2,071,253	+		DDA3937_RS09215	0.63	-1.7
2,071,254	-		DDA3937_RS09215	0.64	-2.7
2,071,254	-		DDA3937_RS09215	0.64	+3.8
2,071,255	+		DDA3937_RS09215	0.64	+2.0
2,071,256	-		DDA3937_RS09215	0.64	-1.1
2,071,256	-		DDA3937_RS09215	0.64	+1.2
2,071,256	-		DDA3937_RS09215	0.64	-2.1
2,071,256	-		DDA3937_RS09215	0.64	-3.7
2,071,262	+		DDA3937_RS09215	0.65	-1.0
2,071,268	-		DDA3937_RS09215	0.65	-1.5
2,071,268	-		DDA3937_RS09215	0.65	-1.9
2,071,303	+		DDA3937_RS09215	0.70	-0.1
2,071,360	+		DDA3937_RS09215	0.77	-0.9
2,071,361	-		DDA3937_RS09215	0.77	-1.1
2,071,404	+		DDA3937_RS09215	0.83	-1.9
2,071,404	+		DDA3937_RS09215	0.83	+0.3
2,071,478	-				+1.2
2,071,498	+				-0.8
2,071,499	-				+1.8
2,071,500	+				-0.7
2,071,501	-				-0.0
2,071,501	-				-1.3
2,071,533	+				-1.7
2,071,533	+				-1.1
2,071,533	+				-3.5
2,071,592	+				-0.7
2,071,599	+				-1.2
2,071,599	+				-1.6
2,071,599	+				-0.5
2,071,599	+				+0.0
2,071,599	+				-2.8
2,071,599	+				-0.9
2,071,599	+				-0.8
2,071,600	-				-0.8
2,071,609	+				-1.5
2,071,609	+				-0.5
2,071,609	+				-0.1
2,071,609	+				-1.1
2,071,610	-				+1.0
2,071,610	-				-3.6
2,071,610	-				+1.2
2,071,613	+				-1.3
2,071,614	-				-1.0
2,071,623	-				+2.4
2,071,628	-				-1.4
2,071,628	-				+2.9
2,071,628	-				+0.6
2,071,648	-				+2.1
2,071,667	-				+1.2
2,071,708	+				-1.8