Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04050 and DDA3937_RS04055 overlap by 4 nucleotides DDA3937_RS04055 and DDA3937_RS21905 overlap by 1 nucleotides DDA3937_RS21905 and DDA3937_RS04065 are separated by 637 nucleotides
DDA3937_RS04050: DDA3937_RS04050 - AAA family ATPase, at 902,452 to 903,081
_RS04050
DDA3937_RS04055: DDA3937_RS04055 - hypothetical protein, at 903,078 to 903,527
_RS04055
DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039
_RS21905
DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078
_RS04065
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 902.580 kb on + strand, within DDA3937_RS04050 at 902.602 kb on - strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.730 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.781 kb on + strand, within DDA3937_RS04050 at 902.784 kb on - strand, within DDA3937_RS04050 at 902.826 kb on + strand, within DDA3937_RS04050 at 902.829 kb on + strand, within DDA3937_RS04050 at 902.899 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.972 kb on + strand, within DDA3937_RS04050 at 903.040 kb on - strand at 903.040 kb on - strand at 903.553 kb on - strand at 903.579 kb on + strand, within DDA3937_RS21905 at 903.582 kb on - strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.688 kb on - strand, within DDA3937_RS21905 at 903.696 kb on + strand, within DDA3937_RS21905 at 903.697 kb on - strand, within DDA3937_RS21905 at 903.724 kb on + strand, within DDA3937_RS21905 at 903.738 kb on + strand, within DDA3937_RS21905 at 903.751 kb on - strand, within DDA3937_RS21905 at 903.755 kb on - strand, within DDA3937_RS21905 at 903.802 kb on + strand, within DDA3937_RS21905 at 903.828 kb on + strand, within DDA3937_RS21905 at 903.843 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.921 kb on - strand, within DDA3937_RS21905 at 903.925 kb on + strand, within DDA3937_RS21905 at 903.927 kb on + strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.979 kb on - strand, within DDA3937_RS21905 at 904.070 kb on + strand at 904.133 kb on + strand at 904.134 kb on - strand at 904.145 kb on - strand at 904.151 kb on - strand at 904.226 kb on - strand at 904.293 kb on + strand at 904.324 kb on - strand at 904.339 kb on + strand at 904.339 kb on + strand at 904.340 kb on - strand at 904.343 kb on + strand at 904.382 kb on - strand at 904.382 kb on - strand at 904.414 kb on + strand at 904.444 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.579 kb on - strand at 904.650 kb on + strand at 904.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 902,580 + DDA3937_RS04050 0.20 -1.4 902,602 - DDA3937_RS04050 0.24 -0.5 902,622 + DDA3937_RS04050 0.27 -0.8 902,622 + DDA3937_RS04050 0.27 -2.8 902,730 - DDA3937_RS04050 0.44 -1.5 902,773 - DDA3937_RS04050 0.51 -0.1 902,773 - DDA3937_RS04050 0.51 -1.8 902,781 + DDA3937_RS04050 0.52 -2.2 902,784 - DDA3937_RS04050 0.53 -1.1 902,826 + DDA3937_RS04050 0.59 -3.1 902,829 + DDA3937_RS04050 0.60 +1.9 902,899 + DDA3937_RS04050 0.71 +0.6 902,912 + DDA3937_RS04050 0.73 -1.4 902,912 + DDA3937_RS04050 0.73 +1.8 902,912 + DDA3937_RS04050 0.73 +0.5 902,912 + DDA3937_RS04050 0.73 -2.5 902,972 + DDA3937_RS04050 0.83 -2.6 903,040 - +2.5 903,040 - +1.1 903,553 - -1.2 903,579 + DDA3937_RS21905 0.10 +1.6 903,582 - DDA3937_RS21905 0.11 -2.0 903,687 + DDA3937_RS21905 0.31 -2.6 903,687 + DDA3937_RS21905 0.31 -0.0 903,687 + DDA3937_RS21905 0.31 -1.5 903,688 - DDA3937_RS21905 0.31 -1.6 903,696 + DDA3937_RS21905 0.33 -1.5 903,697 - DDA3937_RS21905 0.33 -1.5 903,724 + DDA3937_RS21905 0.38 -0.9 903,738 + DDA3937_RS21905 0.41 -2.7 903,751 - DDA3937_RS21905 0.44 -1.0 903,755 - DDA3937_RS21905 0.44 +0.3 903,802 + DDA3937_RS21905 0.54 -0.7 903,828 + DDA3937_RS21905 0.59 +0.1 903,843 + DDA3937_RS21905 0.62 -2.8 903,885 + DDA3937_RS21905 0.70 -2.2 903,885 + DDA3937_RS21905 0.70 +0.0 903,921 - DDA3937_RS21905 0.77 -0.4 903,925 + DDA3937_RS21905 0.78 -1.5 903,927 + DDA3937_RS21905 0.78 -1.2 903,928 - DDA3937_RS21905 0.78 -2.4 903,928 - DDA3937_RS21905 0.78 -1.3 903,979 - DDA3937_RS21905 0.88 +0.6 904,070 + +0.9 904,133 + +0.7 904,134 - +0.5 904,145 - -3.2 904,151 - -1.5 904,226 - -1.9 904,293 + -3.2 904,324 - -0.9 904,339 + +0.7 904,339 + -0.2 904,340 - +3.2 904,343 + +0.5 904,382 - +0.6 904,382 - -1.7 904,414 + -2.6 904,444 + -0.9 904,558 + -0.5 904,558 + +0.2 904,558 + -1.4 904,579 - -0.1 904,650 + -1.7 904,651 - +0.1
Or see this region's nucleotide sequence