Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21130 and DDA3937_RS21135 are separated by 140 nucleotides DDA3937_RS21135 and DDA3937_RS21140 are separated by 120 nucleotides DDA3937_RS21140 and DDA3937_RS21145 are separated by 18 nucleotides DDA3937_RS21145 and DDA3937_RS23460 are separated by 4 nucleotides
DDA3937_RS21130: DDA3937_RS21130 - glucokinase, at 4,810,338 to 4,811,306
_RS21130
DDA3937_RS21135: DDA3937_RS21135 - DUF3861 domain-containing protein, at 4,811,447 to 4,811,737
_RS21135
DDA3937_RS21140: DDA3937_RS21140 - MarR family transcriptional regulator, at 4,811,858 to 4,812,298
_RS21140
DDA3937_RS21145: DDA3937_RS21145 - GNAT family N-acetyltransferase, at 4,812,317 to 4,812,799
_RS21145
DDA3937_RS23460: DDA3937_RS23460 - hypothetical protein, at 4,812,804 to 4,812,953
_RS23460
Position (kb) 4811
4812
4813 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4810.906 kb on + strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.124 kb on - strand, within DDA3937_RS21130 at 4811.216 kb on + strand at 4811.216 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.296 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.307 kb on - strand at 4811.312 kb on - strand at 4811.312 kb on - strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.342 kb on - strand at 4811.342 kb on - strand at 4811.438 kb on + strand at 4811.438 kb on + strand at 4811.439 kb on - strand at 4811.439 kb on - strand at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.635 kb on + strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.719 kb on + strand at 4811.719 kb on + strand at 4811.724 kb on + strand at 4811.730 kb on + strand at 4811.825 kb on - strand at 4811.825 kb on - strand at 4811.826 kb on + strand at 4811.827 kb on - strand at 4811.917 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand at 4812.259 kb on - strand at 4812.259 kb on - strand at 4812.297 kb on - strand at 4812.354 kb on + strand at 4812.355 kb on - strand at 4812.355 kb on - strand at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.369 kb on + strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.370 kb on - strand, within DDA3937_RS21145 at 4812.399 kb on + strand, within DDA3937_RS21145 at 4812.423 kb on + strand, within DDA3937_RS21145 at 4812.423 kb on + strand, within DDA3937_RS21145 at 4812.429 kb on - strand, within DDA3937_RS21145 at 4812.429 kb on - strand, within DDA3937_RS21145 at 4812.488 kb on + strand, within DDA3937_RS21145 at 4812.488 kb on + strand, within DDA3937_RS21145 at 4812.489 kb on - strand, within DDA3937_RS21145 at 4812.503 kb on + strand, within DDA3937_RS21145 at 4812.576 kb on + strand, within DDA3937_RS21145 at 4812.587 kb on - strand, within DDA3937_RS21145 at 4812.636 kb on + strand, within DDA3937_RS21145 at 4812.636 kb on + strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.637 kb on - strand, within DDA3937_RS21145 at 4812.721 kb on - strand, within DDA3937_RS21145 at 4812.772 kb on - strand at 4812.772 kb on - strand at 4812.772 kb on - strand at 4812.802 kb on + strand at 4812.802 kb on + strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.803 kb on - strand at 4812.805 kb on + strand at 4812.806 kb on - strand at 4812.806 kb on - strand at 4812.806 kb on - strand at 4812.806 kb on - strand at 4812.806 kb on - strand at 4812.806 kb on - strand at 4812.878 kb on - strand, within DDA3937_RS23460 at 4812.925 kb on + strand, within DDA3937_RS23460 at 4812.926 kb on - strand, within DDA3937_RS23460 at 4812.955 kb on + strand at 4812.955 kb on + strand at 4812.955 kb on + strand at 4812.956 kb on - strand at 4812.956 kb on - strand at 4812.956 kb on - strand at 4812.956 kb on - strand at 4812.956 kb on - strand at 4812.956 kb on - strand at 4813.010 kb on - strand at 4813.018 kb on + strand at 4813.018 kb on + strand at 4813.018 kb on + strand at 4813.018 kb on + strand at 4813.018 kb on + strand at 4813.019 kb on - strand at 4813.019 kb on - strand at 4813.021 kb on + strand at 4813.022 kb on - strand at 4813.022 kb on - strand at 4813.066 kb on + strand at 4813.067 kb on - strand at 4813.067 kb on - strand at 4813.067 kb on - strand at 4813.075 kb on + strand at 4813.093 kb on + strand at 4813.094 kb on - strand at 4813.105 kb on + strand at 4813.121 kb on - strand at 4813.121 kb on - strand at 4813.141 kb on - strand at 4813.198 kb on + strand at 4813.198 kb on + strand at 4813.198 kb on + strand at 4813.199 kb on - strand at 4813.232 kb on + strand at 4813.244 kb on + strand at 4813.245 kb on - strand at 4813.246 kb on + strand at 4813.246 kb on + strand at 4813.246 kb on + strand at 4813.247 kb on - strand at 4813.247 kb on - strand at 4813.255 kb on + strand at 4813.260 kb on - strand at 4813.275 kb on + strand at 4813.275 kb on + strand at 4813.276 kb on - strand at 4813.276 kb on - strand at 4813.279 kb on + strand at 4813.279 kb on + strand at 4813.280 kb on - strand at 4813.280 kb on - strand at 4813.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,810,906 + DDA3937_RS21130 0.59 -0.0 4,810,907 - DDA3937_RS21130 0.59 +1.2 4,810,907 - DDA3937_RS21130 0.59 +0.1 4,810,907 - DDA3937_RS21130 0.59 -2.3 4,810,907 - DDA3937_RS21130 0.59 -0.3 4,811,123 + DDA3937_RS21130 0.81 +1.7 4,811,123 + DDA3937_RS21130 0.81 -1.2 4,811,123 + DDA3937_RS21130 0.81 -2.0 4,811,124 - DDA3937_RS21130 0.81 +0.1 4,811,216 + -2.7 4,811,216 + +1.0 4,811,286 + -1.7 4,811,286 + -2.6 4,811,286 + +0.6 4,811,287 - +0.4 4,811,287 - -1.8 4,811,287 - -1.3 4,811,296 + -0.2 4,811,306 + -1.4 4,811,306 + -0.7 4,811,306 + -1.4 4,811,306 + +2.5 4,811,307 - +0.4 4,811,312 - +0.6 4,811,312 - -2.7 4,811,341 + +0.2 4,811,341 + -0.4 4,811,341 + -0.3 4,811,342 - -2.0 4,811,342 - -0.7 4,811,438 + -1.9 4,811,438 + -0.9 4,811,439 - +0.1 4,811,439 - -2.2 4,811,479 + DDA3937_RS21135 0.11 +1.5 4,811,479 + DDA3937_RS21135 0.11 -3.4 4,811,479 + DDA3937_RS21135 0.11 -3.2 4,811,480 - DDA3937_RS21135 0.11 -1.4 4,811,480 - DDA3937_RS21135 0.11 -0.0 4,811,480 - DDA3937_RS21135 0.11 +1.4 4,811,480 - DDA3937_RS21135 0.11 -0.9 4,811,635 + DDA3937_RS21135 0.65 -1.1 4,811,636 - DDA3937_RS21135 0.65 -0.4 4,811,636 - DDA3937_RS21135 0.65 +1.0 4,811,719 + +0.8 4,811,719 + -1.0 4,811,724 + +0.2 4,811,730 + -0.7 4,811,825 - -0.7 4,811,825 - +0.9 4,811,826 + -0.5 4,811,827 - -1.0 4,811,917 + DDA3937_RS21140 0.13 -1.6 4,812,035 + DDA3937_RS21140 0.40 -3.2 4,812,035 + DDA3937_RS21140 0.40 -1.9 4,812,035 + DDA3937_RS21140 0.40 -1.8 4,812,035 + DDA3937_RS21140 0.40 -2.3 4,812,036 - DDA3937_RS21140 0.40 +0.6 4,812,036 - DDA3937_RS21140 0.40 +0.1 4,812,036 - DDA3937_RS21140 0.40 +0.9 4,812,036 - DDA3937_RS21140 0.40 -2.6 4,812,036 - DDA3937_RS21140 0.40 +1.1 4,812,036 - +1.6 4,812,259 - +1.4 4,812,259 - -0.4 4,812,297 - +0.6 4,812,354 + -1.5 4,812,355 - -0.8 4,812,355 - +0.7 4,812,369 + DDA3937_RS21145 0.11 -2.9 4,812,369 + DDA3937_RS21145 0.11 -0.6 4,812,369 + DDA3937_RS21145 0.11 +1.9 4,812,370 - DDA3937_RS21145 0.11 +1.7 4,812,370 - DDA3937_RS21145 0.11 -0.7 4,812,370 - DDA3937_RS21145 0.11 -1.0 4,812,370 - DDA3937_RS21145 0.11 -3.3 4,812,370 - DDA3937_RS21145 0.11 -1.2 4,812,399 + DDA3937_RS21145 0.17 -0.4 4,812,423 + DDA3937_RS21145 0.22 -1.7 4,812,423 + DDA3937_RS21145 0.22 -0.7 4,812,429 - DDA3937_RS21145 0.23 -0.4 4,812,429 - DDA3937_RS21145 0.23 -0.5 4,812,488 + DDA3937_RS21145 0.35 -2.6 4,812,488 + DDA3937_RS21145 0.35 -0.4 4,812,489 - DDA3937_RS21145 0.36 -1.0 4,812,503 + DDA3937_RS21145 0.39 -0.7 4,812,576 + DDA3937_RS21145 0.54 +0.1 4,812,587 - DDA3937_RS21145 0.56 -3.9 4,812,636 + DDA3937_RS21145 0.66 +0.2 4,812,636 + DDA3937_RS21145 0.66 -1.8 4,812,637 - DDA3937_RS21145 0.66 -1.7 4,812,637 - DDA3937_RS21145 0.66 -2.7 4,812,637 - DDA3937_RS21145 0.66 -1.2 4,812,721 - DDA3937_RS21145 0.84 -1.6 4,812,772 - -0.2 4,812,772 - -0.4 4,812,772 - -0.6 4,812,802 + +0.5 4,812,802 + -0.0 4,812,803 - +1.5 4,812,803 - +0.2 4,812,803 - -3.4 4,812,803 - -1.7 4,812,803 - +1.9 4,812,803 - +0.0 4,812,803 - -2.2 4,812,803 - +1.8 4,812,803 - +0.2 4,812,803 - -1.1 4,812,803 - +1.0 4,812,803 - +4.9 4,812,803 - +0.7 4,812,803 - +0.1 4,812,803 - -1.0 4,812,805 + -0.5 4,812,806 - -3.2 4,812,806 - -2.0 4,812,806 - +0.2 4,812,806 - -3.2 4,812,806 - -1.0 4,812,806 - +0.8 4,812,878 - DDA3937_RS23460 0.49 +0.2 4,812,925 + DDA3937_RS23460 0.81 +0.4 4,812,926 - DDA3937_RS23460 0.81 +0.5 4,812,955 + +1.8 4,812,955 + +0.6 4,812,955 + +1.4 4,812,956 - +0.3 4,812,956 - +0.3 4,812,956 - +0.5 4,812,956 - -0.7 4,812,956 - +0.5 4,812,956 - -0.8 4,813,010 - +0.8 4,813,018 + +0.3 4,813,018 + -0.0 4,813,018 + -0.4 4,813,018 + -3.2 4,813,018 + -3.6 4,813,019 - -1.2 4,813,019 - -1.2 4,813,021 + -2.3 4,813,022 - +0.8 4,813,022 - +1.3 4,813,066 + +0.5 4,813,067 - -1.7 4,813,067 - +0.5 4,813,067 - +0.3 4,813,075 + -1.0 4,813,093 + +0.1 4,813,094 - +0.4 4,813,105 + -2.3 4,813,121 - +0.4 4,813,121 - +0.2 4,813,141 - -2.0 4,813,198 + +0.6 4,813,198 + -0.7 4,813,198 + +1.5 4,813,199 - -0.5 4,813,232 + -2.1 4,813,244 + -0.1 4,813,245 - +1.3 4,813,246 + +2.0 4,813,246 + -1.6 4,813,246 + -2.5 4,813,247 - -0.7 4,813,247 - -0.9 4,813,255 + -1.0 4,813,260 - +1.6 4,813,275 + -1.8 4,813,275 + -2.9 4,813,276 - -1.2 4,813,276 - +0.3 4,813,279 + -1.4 4,813,279 + -1.0 4,813,280 - -0.0 4,813,280 - -1.7 4,813,290 + -2.1
Or see this region's nucleotide sequence