Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21040

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,786,914	+		DDA3937_RS21035	0.44	+0.4
4,786,953	+				-1.0
4,786,953	+		DDA3937_RS21035	0.46	+1.3
4,786,953	+		DDA3937_RS21035	0.46	+0.3
4,786,953	+		DDA3937_RS21035	0.46	-2.0
4,786,954	-		DDA3937_RS21035	0.46	-1.2
4,786,972	+		DDA3937_RS21035	0.47	+0.8
4,786,972	+		DDA3937_RS21035	0.47	+2.8
4,786,973	-		DDA3937_RS21035	0.47	+1.6
4,787,163	-		DDA3937_RS21035	0.58	+0.5
4,787,218	-		DDA3937_RS21035	0.61	+1.0
4,787,220	+		DDA3937_RS21035	0.61	-2.5
4,787,220	+		DDA3937_RS21035	0.61	+0.2
4,787,220	+		DDA3937_RS21035	0.61	+2.1
4,787,220	+		DDA3937_RS21035	0.61	-1.2
4,787,220	+		DDA3937_RS21035	0.61	+1.7
4,787,220	+		DDA3937_RS21035	0.61	+1.7
4,787,221	-		DDA3937_RS21035	0.61	-2.3
4,787,241	+		DDA3937_RS21035	0.62	-1.6
4,787,241	+		DDA3937_RS21035	0.62	-0.6
4,787,242	-		DDA3937_RS21035	0.62	+0.2
4,787,332	+		DDA3937_RS21035	0.67	-0.4
4,787,332	+		DDA3937_RS21035	0.67	-3.7
4,787,377	+		DDA3937_RS21035	0.70	-0.7
4,787,377	+		DDA3937_RS21035	0.70	-0.4
4,787,379	+		DDA3937_RS21035	0.70	+1.6
4,787,379	+		DDA3937_RS21035	0.70	+0.4
4,787,379	+		DDA3937_RS21035	0.70	+2.7
4,787,380	-		DDA3937_RS21035	0.70	-1.5
4,787,380	-		DDA3937_RS21035	0.70	-0.2
4,787,380	-		DDA3937_RS21035	0.70	-2.7
4,787,380	-		DDA3937_RS21035	0.70	-2.0
4,787,465	+		DDA3937_RS21035	0.75	-3.4
4,787,465	+		DDA3937_RS21035	0.75	-2.9
4,787,466	-		DDA3937_RS21035	0.75	+1.6
4,787,536	+		DDA3937_RS21035	0.79	-2.8
4,787,536	+		DDA3937_RS21035	0.79	-1.0
4,787,537	-		DDA3937_RS21035	0.79	+0.6
4,787,592	+		DDA3937_RS21035	0.82	-0.7
4,787,608	+		DDA3937_RS21035	0.83	-1.8
4,787,609	-		DDA3937_RS21035	0.83	-1.8
4,787,649	+		DDA3937_RS21035	0.85	+1.1
4,787,649	+		DDA3937_RS21035	0.85	-1.2
4,787,649	+		DDA3937_RS21035	0.85	+0.6
4,787,649	+		DDA3937_RS21035	0.85	+1.4
4,787,650	-				+0.6
4,787,650	-		DDA3937_RS21035	0.85	+1.9
4,787,650	-		DDA3937_RS21035	0.85	-0.4
4,787,650	-		DDA3937_RS21035	0.85	-0.2
4,787,650	-		DDA3937_RS21035	0.85	-2.0
4,787,692	+		DDA3937_RS21035	0.88	-0.9
4,787,693	-		DDA3937_RS21035	0.88	-2.6
4,787,693	-		DDA3937_RS21035	0.88	+0.8
4,787,722	+		DDA3937_RS21035	0.90	-1.7
4,787,722	+		DDA3937_RS21035	0.90	+1.3
4,787,722	+		DDA3937_RS21035	0.90	-3.3
4,787,722	+		DDA3937_RS21035	0.90	-0.2
4,787,722	+				-0.7
4,787,722	+		DDA3937_RS21035	0.90	+1.0
4,787,722	+		DDA3937_RS21035	0.90	-1.7
4,787,723	-		DDA3937_RS21035	0.90	-0.9
4,787,723	-		DDA3937_RS21035	0.90	-3.7
4,787,723	-		DDA3937_RS21035	0.90	-0.4
4,787,792	+				-1.9
4,787,793	-				+0.3
4,787,793	-				-1.0
4,787,793	-				-0.9
4,787,793	-				-2.7
4,787,806	+				-1.7
4,787,807	-				-2.6
4,787,807	-				-2.2
4,787,816	+				-0.7
4,787,893	+				-0.0
4,787,894	-				-0.1
4,787,905	+				+0.1
4,788,040	+		DDA3937_RS21040	0.12	-2.7
4,788,040	+		DDA3937_RS21040	0.12	+0.7
4,788,040	+		DDA3937_RS21040	0.12	+1.1
4,788,040	+		DDA3937_RS21040	0.12	-1.1
4,788,040	+		DDA3937_RS21040	0.12	-0.2
4,788,040	+		DDA3937_RS21040	0.12	+1.3
4,788,040	+		DDA3937_RS21040	0.12	+1.2
4,788,041	-		DDA3937_RS21040	0.12	+0.6
4,788,041	-		DDA3937_RS21040	0.12	-0.4
4,788,041	-		DDA3937_RS21040	0.12	-2.9
4,788,041	-		DDA3937_RS21040	0.12	+0.7
4,788,041	-		DDA3937_RS21040	0.12	-3.0
4,788,041	-		DDA3937_RS21040	0.12	-1.6
4,788,041	-		DDA3937_RS21040	0.12	-1.7
4,788,041	-		DDA3937_RS21040	0.12	-1.2
4,788,041	-		DDA3937_RS21040	0.12	-1.5
4,788,114	+		DDA3937_RS21040	0.19	-0.3
4,788,114	+		DDA3937_RS21040	0.19	+1.6
4,788,178	-		DDA3937_RS21040	0.25	+0.6
4,788,246	-		DDA3937_RS21040	0.31	+1.3
4,788,337	+		DDA3937_RS21040	0.39	+0.8
4,788,337	+				+0.8
4,788,338	-		DDA3937_RS21040	0.39	+0.2
4,788,341	-		DDA3937_RS21040	0.39	-1.3
4,788,361	-		DDA3937_RS21040	0.41	-0.6
4,788,396	+		DDA3937_RS21040	0.44	-1.3
4,788,464	+		DDA3937_RS21040	0.50	-1.3
4,788,465	-		DDA3937_RS21040	0.50	+0.3
4,788,508	+		DDA3937_RS21040	0.54	+0.6
4,788,509	-		DDA3937_RS21040	0.54	-0.7
4,788,589	+		DDA3937_RS21040	0.61	+2.7
4,788,589	+		DDA3937_RS21040	0.61	-2.8
4,788,589	+		DDA3937_RS21040	0.61	+1.7
4,788,589	+		DDA3937_RS21040	0.61	-1.2
4,788,590	-		DDA3937_RS21040	0.61	+1.0
4,788,657	+		DDA3937_RS21040	0.67	-1.2
4,788,657	+		DDA3937_RS21040	0.67	-0.3
4,788,657	+		DDA3937_RS21040	0.67	-4.1
4,788,657	+		DDA3937_RS21040	0.67	-3.7
4,788,658	-		DDA3937_RS21040	0.67	-1.6
4,788,658	-		DDA3937_RS21040	0.67	-1.9
4,788,658	-		DDA3937_RS21040	0.67	-1.0
4,788,658	-		DDA3937_RS21040	0.67	-0.3
4,788,658	-				+2.8
4,788,658	-		DDA3937_RS21040	0.67	-0.5
4,788,658	-		DDA3937_RS21040	0.67	+1.1
4,788,674	-		DDA3937_RS21040	0.69	-0.4
4,788,726	+		DDA3937_RS21040	0.73	+0.4
4,788,733	-		DDA3937_RS21040	0.74	+0.1
4,788,999	+				-2.1
4,788,999	+				-1.1
4,788,999	+				+0.1
4,789,000	-				-1.2
4,789,023	+				-1.2
4,789,023	+				-0.0
4,789,023	+				-0.9
4,789,023	+				+0.1
4,789,023	+				-3.2
4,789,023	+				-0.2
4,789,023	+				+1.0
4,789,024	-				+0.5
4,789,024	-				-0.9
4,789,024	-				-1.0
4,789,025	+				-0.2
4,789,025	+				-0.4
4,789,025	+				+0.7
4,789,025	+				+0.4
4,789,025	+				+0.6
4,789,025	+				-2.1
4,789,026	-				-3.4
4,789,026	-				+1.1
4,789,026	-				-0.4
4,789,026	-				-0.7
4,789,026	-				-2.0
4,789,026	-				-0.5
4,789,063	+				-0.4
4,789,064	-				-2.2
4,789,064	-				-1.2
4,789,064	-				-0.7
4,789,116	+				-0.3
4,789,116	+				-2.2
4,789,184	+				-0.7
4,789,193	+				-0.7
4,789,193	+				+1.3
4,789,200	+				+0.2
4,789,200	+				-3.7
4,789,201	-				-1.3
4,789,203	+				+0.1
4,789,203	+				+0.6
4,789,203	+				-0.5
4,789,203	+				+0.2
4,789,203	+				-1.3
4,789,204	-				-0.3
4,789,204	-				-0.4
4,789,204	-				-0.4
4,789,257	-				-0.9
4,789,336	+				-0.0
4,789,336	+				-2.0
4,789,336	+				-2.7
4,789,495	+		DDA3937_RS21045	0.18	-2.4
4,789,496	-		DDA3937_RS21045	0.19	-2.8
4,789,519	+		DDA3937_RS21045	0.20	-0.2
4,789,519	+		DDA3937_RS21045	0.20	-0.9
4,789,519	+		DDA3937_RS21045	0.20	-2.1
4,789,520	-		DDA3937_RS21045	0.21	-1.8
4,789,520	-		DDA3937_RS21045	0.21	+0.6
4,789,520	-		DDA3937_RS21045	0.21	-0.6
4,789,520	-		DDA3937_RS21045	0.21	-1.7
4,789,520	-		DDA3937_RS21045	0.21	-1.7
4,789,520	-				+0.6
4,789,589	+		DDA3937_RS21045	0.26	-3.7
4,789,589	+		DDA3937_RS21045	0.26	-1.0
4,789,589	+		DDA3937_RS21045	0.26	-0.6
4,789,590	-		DDA3937_RS21045	0.26	-2.2
4,789,590	-		DDA3937_RS21045	0.26	-2.9
4,789,597	+		DDA3937_RS21045	0.27	-3.6
4,789,597	+		DDA3937_RS21045	0.27	-2.6
4,789,615	-		DDA3937_RS21045	0.28	-1.7
4,789,685	+		DDA3937_RS21045	0.34	-2.1
4,789,685	+		DDA3937_RS21045	0.34	-1.4
4,789,685	+		DDA3937_RS21045	0.34	-0.4
4,789,686	-		DDA3937_RS21045	0.34	+1.6
4,789,695	+		DDA3937_RS21045	0.35	-0.7
4,789,696	-		DDA3937_RS21045	0.35	-2.0
4,789,696	-		DDA3937_RS21045	0.35	-1.0
4,789,732	-		DDA3937_RS21045	0.38	-1.9
4,789,779	+		DDA3937_RS21045	0.42	-2.2
4,789,796	+		DDA3937_RS21045	0.44	+0.2
4,789,873	+		DDA3937_RS21045	0.50	-0.2
4,789,950	-		DDA3937_RS21045	0.56	-1.3
4,789,950	-		DDA3937_RS21045	0.56	+0.7
4,790,002	+		DDA3937_RS21045	0.61	-2.3
4,790,003	-		DDA3937_RS21045	0.61	-0.6