Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20965 and DDA3937_RS20970 are separated by 120 nucleotides DDA3937_RS20970 and DDA3937_RS20975 are separated by 159 nucleotides DDA3937_RS20975 and DDA3937_RS20980 are separated by 75 nucleotides
DDA3937_RS20965: DDA3937_RS20965 - methyl-accepting chemotaxis protein, at 4,767,374 to 4,769,260
_RS20965
DDA3937_RS20970: DDA3937_RS20970 - mannitol operon repressor, at 4,769,381 to 4,769,911
_RS20970
DDA3937_RS20975: DDA3937_RS20975 - mannitol-1-phosphate 5-dehydrogenase, at 4,770,071 to 4,771,219
_RS20975
DDA3937_RS20980: DDA3937_RS20980 - PTS mannitol transporter subunit IICBA, at 4,771,295 to 4,773,202
_RS20980
Position (kb) 4770
4771
4772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.250 kb on - strand at 4769.250 kb on - strand at 4769.252 kb on - strand at 4769.252 kb on - strand at 4769.364 kb on + strand at 4769.364 kb on + strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.413 kb on + strand at 4769.414 kb on - strand at 4769.647 kb on + strand at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.766 kb on + strand, within DDA3937_RS20970 at 4769.767 kb on - strand, within DDA3937_RS20970 at 4769.820 kb on - strand, within DDA3937_RS20970 at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.925 kb on - strand at 4769.930 kb on - strand at 4770.012 kb on - strand at 4770.072 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.323 kb on - strand, within DDA3937_RS20975 at 4770.402 kb on + strand, within DDA3937_RS20975 at 4770.403 kb on - strand, within DDA3937_RS20975 at 4770.403 kb on - strand, within DDA3937_RS20975 at 4770.433 kb on - strand, within DDA3937_RS20975 at 4770.523 kb on + strand, within DDA3937_RS20975 at 4770.524 kb on - strand, within DDA3937_RS20975 at 4770.524 kb on - strand, within DDA3937_RS20975 at 4770.546 kb on + strand, within DDA3937_RS20975 at 4770.546 kb on + strand, within DDA3937_RS20975 at 4770.547 kb on - strand, within DDA3937_RS20975 at 4770.572 kb on - strand, within DDA3937_RS20975 at 4770.664 kb on + strand, within DDA3937_RS20975 at 4770.743 kb on - strand, within DDA3937_RS20975 at 4770.743 kb on - strand at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.794 kb on + strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.795 kb on - strand, within DDA3937_RS20975 at 4770.796 kb on + strand, within DDA3937_RS20975 at 4770.797 kb on - strand, within DDA3937_RS20975 at 4770.797 kb on - strand, within DDA3937_RS20975 at 4770.829 kb on + strand at 4770.829 kb on + strand, within DDA3937_RS20975 at 4770.830 kb on - strand, within DDA3937_RS20975 at 4770.868 kb on + strand, within DDA3937_RS20975 at 4770.869 kb on - strand, within DDA3937_RS20975 at 4770.871 kb on + strand, within DDA3937_RS20975 at 4770.871 kb on + strand at 4770.871 kb on + strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4770.872 kb on - strand, within DDA3937_RS20975 at 4771.084 kb on - strand, within DDA3937_RS20975 at 4771.084 kb on - strand, within DDA3937_RS20975 at 4771.088 kb on - strand, within DDA3937_RS20975 at 4771.088 kb on - strand, within DDA3937_RS20975 at 4771.208 kb on + strand at 4771.209 kb on - strand at 4771.227 kb on - strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.232 kb on + strand at 4771.233 kb on - strand at 4771.233 kb on - strand at 4771.233 kb on - strand at 4771.236 kb on - strand at 4771.236 kb on - strand at 4771.236 kb on - strand at 4771.245 kb on + strand at 4771.245 kb on + strand at 4771.290 kb on - strand at 4771.348 kb on + strand at 4771.351 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.364 kb on + strand at 4771.365 kb on - strand at 4771.365 kb on - strand at 4771.365 kb on - strand at 4771.508 kb on + strand, within DDA3937_RS20980 at 4771.509 kb on - strand, within DDA3937_RS20980 at 4771.581 kb on + strand, within DDA3937_RS20980 at 4771.582 kb on - strand, within DDA3937_RS20980 at 4771.582 kb on - strand, within DDA3937_RS20980 at 4771.623 kb on + strand, within DDA3937_RS20980 at 4771.623 kb on + strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.624 kb on - strand, within DDA3937_RS20980 at 4771.638 kb on + strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.639 kb on - strand, within DDA3937_RS20980 at 4771.649 kb on + strand, within DDA3937_RS20980 at 4771.649 kb on + strand, within DDA3937_RS20980 at 4771.650 kb on - strand, within DDA3937_RS20980 at 4771.834 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.836 kb on + strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980 at 4771.837 kb on - strand, within DDA3937_RS20980
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,769,249 + -1.9 4,769,249 + -0.5 4,769,249 + -0.6 4,769,249 + -0.0 4,769,249 + -2.9 4,769,249 + -0.3 4,769,250 - -0.4 4,769,250 - +0.6 4,769,252 - -1.0 4,769,252 - +0.4 4,769,364 + -1.6 4,769,364 + -0.5 4,769,365 - -0.3 4,769,365 - -2.1 4,769,365 - +1.8 4,769,413 + +0.1 4,769,414 - -1.0 4,769,647 + -0.0 4,769,685 + DDA3937_RS20970 0.57 +1.2 4,769,685 + DDA3937_RS20970 0.57 -0.7 4,769,686 - DDA3937_RS20970 0.57 +1.4 4,769,686 - DDA3937_RS20970 0.57 -2.2 4,769,686 - DDA3937_RS20970 0.57 -1.5 4,769,754 + DDA3937_RS20970 0.70 -0.4 4,769,754 + DDA3937_RS20970 0.70 +0.6 4,769,766 + DDA3937_RS20970 0.73 -1.9 4,769,767 - DDA3937_RS20970 0.73 -0.1 4,769,820 - DDA3937_RS20970 0.83 +1.6 4,769,924 + -1.4 4,769,924 + -0.3 4,769,924 + +2.8 4,769,924 + -0.6 4,769,925 - -1.0 4,769,930 - -2.4 4,770,012 - +1.2 4,770,072 + -2.1 4,770,087 + -1.6 4,770,087 + -1.0 4,770,087 + -1.8 4,770,087 + -3.2 4,770,088 - -1.6 4,770,088 - -0.2 4,770,088 - -1.9 4,770,088 - -0.9 4,770,088 - +2.0 4,770,088 - +0.6 4,770,323 - DDA3937_RS20975 0.22 -0.0 4,770,402 + DDA3937_RS20975 0.29 -1.4 4,770,403 - DDA3937_RS20975 0.29 -0.9 4,770,403 - DDA3937_RS20975 0.29 -0.7 4,770,433 - DDA3937_RS20975 0.32 -1.1 4,770,523 + DDA3937_RS20975 0.39 +0.1 4,770,524 - DDA3937_RS20975 0.39 -2.0 4,770,524 - DDA3937_RS20975 0.39 -0.6 4,770,546 + DDA3937_RS20975 0.41 -2.3 4,770,546 + DDA3937_RS20975 0.41 -0.4 4,770,547 - DDA3937_RS20975 0.41 -4.1 4,770,572 - DDA3937_RS20975 0.44 -2.4 4,770,664 + DDA3937_RS20975 0.52 -0.7 4,770,743 - DDA3937_RS20975 0.58 +1.1 4,770,743 - -0.7 4,770,794 + DDA3937_RS20975 0.63 +3.0 4,770,794 + DDA3937_RS20975 0.63 -0.7 4,770,794 + DDA3937_RS20975 0.63 -1.6 4,770,794 + DDA3937_RS20975 0.63 -2.1 4,770,794 + DDA3937_RS20975 0.63 -0.0 4,770,795 - DDA3937_RS20975 0.63 -1.6 4,770,795 - DDA3937_RS20975 0.63 -1.0 4,770,795 - DDA3937_RS20975 0.63 -1.6 4,770,795 - DDA3937_RS20975 0.63 +1.8 4,770,795 - DDA3937_RS20975 0.63 -3.3 4,770,795 - DDA3937_RS20975 0.63 -1.1 4,770,795 - DDA3937_RS20975 0.63 +2.9 4,770,796 + DDA3937_RS20975 0.63 +1.1 4,770,797 - DDA3937_RS20975 0.63 -0.4 4,770,797 - DDA3937_RS20975 0.63 -4.3 4,770,829 + -0.0 4,770,829 + DDA3937_RS20975 0.66 -1.4 4,770,830 - DDA3937_RS20975 0.66 -2.2 4,770,868 + DDA3937_RS20975 0.69 -1.6 4,770,869 - DDA3937_RS20975 0.69 -1.0 4,770,871 + DDA3937_RS20975 0.70 -1.0 4,770,871 + -0.4 4,770,871 + DDA3937_RS20975 0.70 -1.9 4,770,872 - DDA3937_RS20975 0.70 -1.0 4,770,872 - DDA3937_RS20975 0.70 +0.6 4,770,872 - DDA3937_RS20975 0.70 -1.0 4,770,872 - DDA3937_RS20975 0.70 -1.6 4,771,084 - DDA3937_RS20975 0.88 -2.1 4,771,084 - DDA3937_RS20975 0.88 -0.2 4,771,088 - DDA3937_RS20975 0.89 -1.3 4,771,088 - DDA3937_RS20975 0.89 +0.4 4,771,208 + +0.4 4,771,209 - -0.2 4,771,227 - -0.2 4,771,232 + -2.0 4,771,232 + +0.6 4,771,232 + -0.4 4,771,232 + +1.3 4,771,232 + +0.4 4,771,233 - -1.9 4,771,233 - +0.0 4,771,233 - +2.6 4,771,236 - -0.9 4,771,236 - -0.4 4,771,236 - -0.7 4,771,245 + -3.7 4,771,245 + -4.3 4,771,290 - -0.1 4,771,348 + -0.3 4,771,351 + -1.6 4,771,364 + -1.6 4,771,364 + -1.2 4,771,364 + +2.2 4,771,364 + +0.1 4,771,365 - -0.0 4,771,365 - +1.3 4,771,365 - -1.2 4,771,508 + DDA3937_RS20980 0.11 +0.1 4,771,509 - DDA3937_RS20980 0.11 +0.2 4,771,581 + DDA3937_RS20980 0.15 +0.5 4,771,582 - DDA3937_RS20980 0.15 +0.3 4,771,582 - DDA3937_RS20980 0.15 -4.4 4,771,623 + DDA3937_RS20980 0.17 -0.5 4,771,623 + DDA3937_RS20980 0.17 +0.9 4,771,624 - DDA3937_RS20980 0.17 +0.6 4,771,624 - DDA3937_RS20980 0.17 -2.6 4,771,624 - DDA3937_RS20980 0.17 -2.7 4,771,638 + DDA3937_RS20980 0.18 +1.3 4,771,639 - DDA3937_RS20980 0.18 -0.2 4,771,639 - DDA3937_RS20980 0.18 +1.2 4,771,639 - DDA3937_RS20980 0.18 +1.1 4,771,639 - DDA3937_RS20980 0.18 -0.2 4,771,639 - DDA3937_RS20980 0.18 -0.7 4,771,649 + DDA3937_RS20980 0.19 -0.2 4,771,649 + DDA3937_RS20980 0.19 -2.3 4,771,650 - DDA3937_RS20980 0.19 -1.9 4,771,834 + DDA3937_RS20980 0.28 +1.0 4,771,836 + DDA3937_RS20980 0.28 -3.3 4,771,836 + DDA3937_RS20980 0.28 -0.4 4,771,836 + DDA3937_RS20980 0.28 -0.0 4,771,836 + DDA3937_RS20980 0.28 +0.3 4,771,836 + DDA3937_RS20980 0.28 -1.5 4,771,836 + DDA3937_RS20980 0.28 -1.2 4,771,836 + DDA3937_RS20980 0.28 +3.7 4,771,837 - DDA3937_RS20980 0.28 +0.2 4,771,837 - DDA3937_RS20980 0.28 -2.2 4,771,837 - DDA3937_RS20980 0.28 -0.5 4,771,837 - DDA3937_RS20980 0.28 -1.5 4,771,837 - DDA3937_RS20980 0.28 -1.3 4,771,837 - DDA3937_RS20980 0.28 -1.2 4,771,837 - DDA3937_RS20980 0.28 -1.8 4,771,837 - DDA3937_RS20980 0.28 +0.4
Or see this region's nucleotide sequence