Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20645 and DDA3937_RS20650 are separated by 167 nucleotides DDA3937_RS20650 and DDA3937_RS20655 are separated by 22 nucleotides DDA3937_RS20655 and DDA3937_RS20660 are separated by 97 nucleotides DDA3937_RS20660 and DDA3937_RS20665 are separated by 188 nucleotides
DDA3937_RS20645: DDA3937_RS20645 - YicC family protein, at 4,696,969 to 4,697,832
_RS20645
DDA3937_RS20650: DDA3937_RS20650 - helix-turn-helix transcriptional regulator, at 4,698,000 to 4,698,317
_RS20650
DDA3937_RS20655: DDA3937_RS20655 - helix-turn-helix domain-containing protein, at 4,698,340 to 4,698,597
_RS20655
DDA3937_RS20660: DDA3937_RS20660 - helix-turn-helix transcriptional regulator, at 4,698,695 to 4,699,015
_RS20660
DDA3937_RS20665: DDA3937_RS20665 - glycoside hydrolase family 19 protein, at 4,699,204 to 4,701,582
_RS20665
Position (kb) 4698
4699
4700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4697.700 kb on + strand, within DDA3937_RS20645 at 4697.700 kb on + strand, within DDA3937_RS20645 at 4697.701 kb on - strand, within DDA3937_RS20645 at 4697.927 kb on + strand at 4697.928 kb on - strand at 4697.928 kb on - strand at 4697.950 kb on + strand at 4697.984 kb on + strand at 4698.026 kb on + strand at 4698.027 kb on - strand at 4698.027 kb on - strand at 4698.103 kb on + strand, within DDA3937_RS20650 at 4698.104 kb on - strand, within DDA3937_RS20650 at 4698.165 kb on - strand, within DDA3937_RS20650 at 4698.219 kb on + strand, within DDA3937_RS20650 at 4698.219 kb on + strand, within DDA3937_RS20650 at 4698.253 kb on + strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.254 kb on - strand, within DDA3937_RS20650 at 4698.311 kb on + strand at 4698.311 kb on + strand at 4698.358 kb on + strand at 4698.358 kb on + strand at 4698.398 kb on + strand, within DDA3937_RS20655 at 4698.399 kb on - strand, within DDA3937_RS20655 at 4698.401 kb on + strand, within DDA3937_RS20655 at 4698.402 kb on - strand, within DDA3937_RS20655 at 4698.402 kb on - strand, within DDA3937_RS20655 at 4698.416 kb on - strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.543 kb on + strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.544 kb on - strand, within DDA3937_RS20655 at 4698.608 kb on - strand at 4698.608 kb on - strand at 4698.608 kb on - strand at 4698.739 kb on + strand, within DDA3937_RS20660 at 4698.914 kb on + strand, within DDA3937_RS20660 at 4698.914 kb on + strand, within DDA3937_RS20660 at 4698.949 kb on - strand, within DDA3937_RS20660 at 4698.949 kb on - strand, within DDA3937_RS20660 at 4698.997 kb on - strand at 4699.014 kb on - strand at 4699.014 kb on - strand at 4699.017 kb on - strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.052 kb on - strand at 4699.052 kb on - strand at 4699.052 kb on - strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.063 kb on + strand at 4699.064 kb on - strand at 4699.064 kb on - strand at 4699.064 kb on - strand at 4699.073 kb on + strand at 4699.074 kb on - strand at 4699.074 kb on - strand at 4699.119 kb on - strand at 4699.119 kb on - strand at 4699.122 kb on + strand at 4699.122 kb on + strand at 4699.123 kb on - strand at 4699.123 kb on - strand at 4699.123 kb on - strand at 4699.130 kb on - strand at 4699.130 kb on - strand at 4699.210 kb on - strand at 4699.210 kb on - strand at 4699.210 kb on - strand at 4699.246 kb on + strand at 4699.353 kb on + strand at 4699.354 kb on - strand at 4699.370 kb on + strand at 4699.413 kb on + strand at 4699.414 kb on - strand at 4699.449 kb on + strand, within DDA3937_RS20665 at 4699.449 kb on + strand, within DDA3937_RS20665 at 4699.456 kb on + strand, within DDA3937_RS20665 at 4699.480 kb on + strand, within DDA3937_RS20665 at 4699.481 kb on - strand, within DDA3937_RS20665 at 4699.481 kb on - strand, within DDA3937_RS20665 at 4699.527 kb on + strand, within DDA3937_RS20665 at 4699.527 kb on + strand, within DDA3937_RS20665 at 4699.576 kb on + strand, within DDA3937_RS20665 at 4699.577 kb on - strand, within DDA3937_RS20665 at 4699.577 kb on - strand, within DDA3937_RS20665 at 4699.578 kb on + strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.579 kb on - strand, within DDA3937_RS20665 at 4699.604 kb on - strand, within DDA3937_RS20665 at 4699.647 kb on + strand, within DDA3937_RS20665 at 4699.647 kb on + strand, within DDA3937_RS20665 at 4699.648 kb on - strand, within DDA3937_RS20665 at 4699.666 kb on + strand, within DDA3937_RS20665 at 4699.667 kb on - strand, within DDA3937_RS20665 at 4699.667 kb on - strand, within DDA3937_RS20665 at 4699.714 kb on - strand, within DDA3937_RS20665 at 4699.736 kb on + strand, within DDA3937_RS20665 at 4699.737 kb on - strand, within DDA3937_RS20665 at 4699.737 kb on - strand, within DDA3937_RS20665 at 4699.770 kb on - strand, within DDA3937_RS20665 at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.782 kb on + strand at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.782 kb on + strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.783 kb on - strand, within DDA3937_RS20665 at 4699.786 kb on - strand, within DDA3937_RS20665 at 4699.863 kb on + strand, within DDA3937_RS20665 at 4699.940 kb on - strand, within DDA3937_RS20665 at 4699.940 kb on - strand, within DDA3937_RS20665 at 4700.013 kb on + strand, within DDA3937_RS20665
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,697,700 + DDA3937_RS20645 0.85 -0.6 4,697,700 + DDA3937_RS20645 0.85 -1.0 4,697,701 - DDA3937_RS20645 0.85 +0.9 4,697,927 + -0.2 4,697,928 - +1.8 4,697,928 - -0.4 4,697,950 + -0.8 4,697,984 + -1.0 4,698,026 + -2.2 4,698,027 - -2.4 4,698,027 - -3.8 4,698,103 + DDA3937_RS20650 0.32 +0.5 4,698,104 - DDA3937_RS20650 0.33 -0.7 4,698,165 - DDA3937_RS20650 0.52 -3.4 4,698,219 + DDA3937_RS20650 0.69 -0.3 4,698,219 + DDA3937_RS20650 0.69 +0.1 4,698,253 + DDA3937_RS20650 0.80 -3.0 4,698,254 - DDA3937_RS20650 0.80 -1.0 4,698,254 - DDA3937_RS20650 0.80 +1.0 4,698,254 - DDA3937_RS20650 0.80 -2.4 4,698,254 - DDA3937_RS20650 0.80 -0.8 4,698,254 - DDA3937_RS20650 0.80 +0.2 4,698,311 + -0.4 4,698,311 + -1.4 4,698,358 + +0.9 4,698,358 + -1.0 4,698,398 + DDA3937_RS20655 0.22 -2.4 4,698,399 - DDA3937_RS20655 0.23 -0.7 4,698,401 + DDA3937_RS20655 0.24 +2.3 4,698,402 - DDA3937_RS20655 0.24 -3.4 4,698,402 - DDA3937_RS20655 0.24 -0.2 4,698,416 - DDA3937_RS20655 0.29 -0.5 4,698,543 + DDA3937_RS20655 0.79 -0.4 4,698,543 + DDA3937_RS20655 0.79 +0.3 4,698,543 + DDA3937_RS20655 0.79 -0.8 4,698,544 - DDA3937_RS20655 0.79 -1.5 4,698,544 - DDA3937_RS20655 0.79 -2.5 4,698,544 - DDA3937_RS20655 0.79 +1.0 4,698,544 - DDA3937_RS20655 0.79 -1.7 4,698,608 - +0.6 4,698,608 - -1.9 4,698,608 - -0.5 4,698,739 + DDA3937_RS20660 0.14 -1.8 4,698,914 + DDA3937_RS20660 0.68 -1.9 4,698,914 + DDA3937_RS20660 0.68 -2.5 4,698,949 - DDA3937_RS20660 0.79 -1.8 4,698,949 - DDA3937_RS20660 0.79 -2.5 4,698,997 - -0.8 4,699,014 - +0.5 4,699,014 - -1.7 4,699,017 - -1.3 4,699,051 + -1.0 4,699,051 + -1.0 4,699,051 + -0.2 4,699,051 + -2.0 4,699,051 + -0.2 4,699,051 + +2.3 4,699,052 - -1.2 4,699,052 - -1.5 4,699,052 - -1.4 4,699,063 + -0.4 4,699,063 + -1.4 4,699,063 + +0.2 4,699,063 + -3.0 4,699,063 + -0.5 4,699,063 + -0.5 4,699,064 - -0.8 4,699,064 - +0.4 4,699,064 - -1.4 4,699,073 + -1.1 4,699,074 - -3.1 4,699,074 - +0.8 4,699,119 - -1.8 4,699,119 - -1.0 4,699,122 + +0.9 4,699,122 + -2.5 4,699,123 - -1.2 4,699,123 - -1.0 4,699,123 - -0.0 4,699,130 - -1.4 4,699,130 - -1.2 4,699,210 - -0.0 4,699,210 - -1.0 4,699,210 - -2.5 4,699,246 + +0.2 4,699,353 + -1.6 4,699,354 - -0.5 4,699,370 + +0.5 4,699,413 + -2.2 4,699,414 - -3.6 4,699,449 + DDA3937_RS20665 0.10 -0.9 4,699,449 + DDA3937_RS20665 0.10 -3.4 4,699,456 + DDA3937_RS20665 0.11 -2.5 4,699,480 + DDA3937_RS20665 0.12 -3.3 4,699,481 - DDA3937_RS20665 0.12 -0.8 4,699,481 - DDA3937_RS20665 0.12 +0.4 4,699,527 + DDA3937_RS20665 0.14 +0.1 4,699,527 + DDA3937_RS20665 0.14 +0.5 4,699,576 + DDA3937_RS20665 0.16 +0.5 4,699,577 - DDA3937_RS20665 0.16 -1.9 4,699,577 - DDA3937_RS20665 0.16 +2.1 4,699,578 + DDA3937_RS20665 0.16 +0.4 4,699,579 - DDA3937_RS20665 0.16 -1.8 4,699,579 - DDA3937_RS20665 0.16 -0.3 4,699,579 - DDA3937_RS20665 0.16 -0.5 4,699,579 - DDA3937_RS20665 0.16 +0.9 4,699,604 - DDA3937_RS20665 0.17 -1.5 4,699,647 + DDA3937_RS20665 0.19 -0.2 4,699,647 + DDA3937_RS20665 0.19 +1.2 4,699,648 - DDA3937_RS20665 0.19 -1.3 4,699,666 + DDA3937_RS20665 0.19 -2.7 4,699,667 - DDA3937_RS20665 0.19 -2.4 4,699,667 - DDA3937_RS20665 0.19 -0.1 4,699,714 - DDA3937_RS20665 0.21 -2.3 4,699,736 + DDA3937_RS20665 0.22 -0.9 4,699,737 - DDA3937_RS20665 0.22 -1.4 4,699,737 - DDA3937_RS20665 0.22 +0.6 4,699,770 - DDA3937_RS20665 0.24 +0.1 4,699,782 + DDA3937_RS20665 0.24 +0.4 4,699,782 + +0.5 4,699,782 + DDA3937_RS20665 0.24 -1.6 4,699,782 + DDA3937_RS20665 0.24 -2.7 4,699,783 - DDA3937_RS20665 0.24 -0.6 4,699,783 - DDA3937_RS20665 0.24 -0.7 4,699,783 - DDA3937_RS20665 0.24 -3.0 4,699,786 - DDA3937_RS20665 0.24 +0.2 4,699,863 + DDA3937_RS20665 0.28 -0.7 4,699,940 - DDA3937_RS20665 0.31 -1.9 4,699,940 - DDA3937_RS20665 0.31 -0.0 4,700,013 + DDA3937_RS20665 0.34 -1.3
Or see this region's nucleotide sequence