Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20055

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,562,518	+		DDA3937_RS20050	0.25	-3.0
4,562,645	-		DDA3937_RS20050	0.35	+0.7
4,562,645	-		DDA3937_RS20050	0.35	-0.2
4,562,697	-		DDA3937_RS20050	0.39	-0.4
4,562,971	+		DDA3937_RS20050	0.61	+0.4
4,562,972	-		DDA3937_RS20050	0.61	-2.2
4,563,000	+		DDA3937_RS20050	0.63	-1.6
4,563,207	-		DDA3937_RS20050	0.79	+1.8
4,563,207	-		DDA3937_RS20050	0.79	-0.1
4,563,270	+		DDA3937_RS20050	0.84	-2.3
4,563,270	+		DDA3937_RS20050	0.84	+1.0
4,563,271	-		DDA3937_RS20050	0.85	+0.4
4,563,271	-		DDA3937_RS20050	0.85	+3.1
4,563,271	-		DDA3937_RS20050	0.85	-0.7
4,563,271	-		DDA3937_RS20050	0.85	+1.0
4,563,271	-		DDA3937_RS20050	0.85	+1.7
4,563,323	-		DDA3937_RS20050	0.89	-0.8
4,563,328	+		DDA3937_RS20050	0.89	-0.4
4,563,329	-		DDA3937_RS20050	0.89	-3.0
4,563,427	+				+2.0
4,563,427	+				+0.1
4,563,427	+				-2.7
4,563,429	+				+1.1
4,563,430	-				+0.4
4,563,430	-				+1.1
4,563,430	-				+0.4
4,563,542	+				-0.5
4,563,542	+				-1.0
4,563,542	+				-2.0
4,563,543	-				+0.0
4,563,543	-				+1.3
4,563,543	-				+0.6
4,563,557	+				+0.4
4,563,557	+				+0.3
4,563,558	-				+1.0
4,563,558	-				+4.0
4,563,777	-		DDA3937_RS20055	0.28	-2.2
4,563,777	-		DDA3937_RS20055	0.28	+1.1
4,563,777	-		DDA3937_RS20055	0.28	+1.5
4,563,777	-		DDA3937_RS20055	0.28	-0.6
4,563,777	-		DDA3937_RS20055	0.28	-2.4
4,563,777	-		DDA3937_RS20055	0.28	+0.0
4,563,777	-		DDA3937_RS20055	0.28	-0.1
4,563,822	+		DDA3937_RS20055	0.32	-1.9
4,563,822	+		DDA3937_RS20055	0.32	-2.6
4,563,822	+		DDA3937_RS20055	0.32	+1.3
4,563,841	+		DDA3937_RS20055	0.33	+0.0
4,563,841	+		DDA3937_RS20055	0.33	-1.2
4,563,842	-		DDA3937_RS20055	0.34	+0.8
4,563,842	-		DDA3937_RS20055	0.34	+0.7
4,563,842	-		DDA3937_RS20055	0.34	+1.6
4,563,842	-		DDA3937_RS20055	0.34	-0.9
4,563,860	-		DDA3937_RS20055	0.35	-2.0
4,563,866	+		DDA3937_RS20055	0.36	-4.5
4,564,002	-		DDA3937_RS20055	0.48	-0.4
4,564,063	+		DDA3937_RS20055	0.53	+0.2
4,564,063	+				-0.4
4,564,163	+		DDA3937_RS20055	0.62	+0.1
4,564,164	-		DDA3937_RS20055	0.62	+0.5
4,564,164	-		DDA3937_RS20055	0.62	+0.9
4,564,164	-		DDA3937_RS20055	0.62	+0.9
4,564,249	-		DDA3937_RS20055	0.69	+0.3
4,564,263	+		DDA3937_RS20055	0.71	-2.6
4,564,264	-		DDA3937_RS20055	0.71	-0.2
4,564,271	+		DDA3937_RS20055	0.71	-0.5
4,564,272	-		DDA3937_RS20055	0.72	+1.1
4,564,272	-		DDA3937_RS20055	0.72	+2.8
4,564,327	+		DDA3937_RS20055	0.76	+0.5
4,564,327	+		DDA3937_RS20055	0.76	+1.4
4,564,327	+		DDA3937_RS20055	0.76	-2.4
4,564,327	+		DDA3937_RS20055	0.76	-0.9
4,564,327	+		DDA3937_RS20055	0.76	-0.2
4,564,327	+		DDA3937_RS20055	0.76	-1.4
4,564,327	+		DDA3937_RS20055	0.76	+0.8
4,564,328	-		DDA3937_RS20055	0.76	-0.6
4,564,328	-		DDA3937_RS20055	0.76	+0.5
4,564,328	-		DDA3937_RS20055	0.76	-1.0
4,564,328	-		DDA3937_RS20055	0.76	-0.7
4,564,328	-		DDA3937_RS20055	0.76	+0.4
4,564,328	-		DDA3937_RS20055	0.76	-1.6
4,564,413	+		DDA3937_RS20055	0.84	-1.0
4,564,413	+		DDA3937_RS20055	0.84	-0.4
4,564,428	-		DDA3937_RS20055	0.85	+1.6
4,564,552	+				-2.0
4,564,585	+				-1.5
4,564,586	-				-0.6
4,564,586	-				-0.7
4,564,607	+				-2.0
4,564,607	+				-3.0
4,564,608	-				+2.2
4,564,643	+				-0.8
4,564,644	-				-0.7
4,564,649	+				-2.2
4,564,649	+				-0.7
4,564,649	+				-1.8
4,564,654	+				-1.7
4,564,655	-				-0.7
4,564,655	-				-1.9
4,564,655	-				-0.7
4,564,655	-				+0.9
4,564,655	-				+0.7
4,564,796	+		DDA3937_RS20060	0.11	-2.1
4,564,796	+		DDA3937_RS20060	0.11	-0.2
4,564,796	+		DDA3937_RS20060	0.11	+3.2
4,564,796	+		DDA3937_RS20060	0.11	+0.7
4,564,810	+		DDA3937_RS20060	0.13	-1.7
4,564,811	-		DDA3937_RS20060	0.13	-1.1
4,564,811	-		DDA3937_RS20060	0.13	+0.7
4,564,811	-		DDA3937_RS20060	0.13	+0.9
4,564,811	-		DDA3937_RS20060	0.13	+0.2
4,565,001	+		DDA3937_RS20060	0.31	+0.7
4,565,001	+		DDA3937_RS20060	0.31	-0.1
4,565,001	+		DDA3937_RS20060	0.31	-1.4
4,565,001	+		DDA3937_RS20060	0.31	+1.6
4,565,001	+		DDA3937_RS20060	0.31	-3.6
4,565,001	+		DDA3937_RS20060	0.31	+1.6
4,565,002	-		DDA3937_RS20060	0.31	+0.3
4,565,002	-		DDA3937_RS20060	0.31	-0.3
4,565,002	-		DDA3937_RS20060	0.31	+1.4
4,565,049	+		DDA3937_RS20060	0.36	-0.4
4,565,050	-		DDA3937_RS20060	0.36	-2.5
4,565,050	-		DDA3937_RS20060	0.36	+0.2
4,565,050	-		DDA3937_RS20060	0.36	-2.6
4,565,062	+		DDA3937_RS20060	0.37	-0.5
4,565,063	-		DDA3937_RS20060	0.37	+0.3
4,565,188	+		DDA3937_RS20060	0.49	-2.3
4,565,188	+		DDA3937_RS20060	0.49	-0.2
4,565,188	+				+0.6
4,565,188	+		DDA3937_RS20060	0.49	-1.7
4,565,188	+		DDA3937_RS20060	0.49	-1.4
4,565,188	+		DDA3937_RS20060	0.49	+1.1
4,565,189	-		DDA3937_RS20060	0.49	+1.9
4,565,189	-		DDA3937_RS20060	0.49	-2.4
4,565,189	-		DDA3937_RS20060	0.49	-2.1
4,565,189	-		DDA3937_RS20060	0.49	+1.0
4,565,189	-		DDA3937_RS20060	0.49	-2.7
4,565,244	-		DDA3937_RS20060	0.54	-2.2
4,565,285	+		DDA3937_RS20060	0.58	-0.3
4,565,286	-		DDA3937_RS20060	0.59	-1.2
4,565,353	+				-0.7
4,565,353	+		DDA3937_RS20060	0.65	-2.7
4,565,353	+		DDA3937_RS20060	0.65	-2.0
4,565,354	-		DDA3937_RS20060	0.65	-0.4
4,565,354	-		DDA3937_RS20060	0.65	+1.0
4,565,389	+		DDA3937_RS20060	0.69	-2.6
4,565,390	-		DDA3937_RS20060	0.69	-2.1
4,565,578	+		DDA3937_RS20060	0.87	-0.9
4,565,578	+		DDA3937_RS20060	0.87	+0.4
4,565,578	+		DDA3937_RS20060	0.87	-4.3
4,565,578	+		DDA3937_RS20060	0.87	-1.5
4,565,579	-		DDA3937_RS20060	0.87	+1.7
4,565,579	-		DDA3937_RS20060	0.87	-2.5
4,565,579	-		DDA3937_RS20060	0.87	+0.5