Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18510 and DDA3937_RS18515 are separated by 206 nucleotides DDA3937_RS18515 and DDA3937_RS18520 are separated by 67 nucleotides
DDA3937_RS18510: DDA3937_RS18510 - class II fructose-bisphosphate aldolase, at 4,229,759 to 4,230,835
_RS18510
DDA3937_RS18515: DDA3937_RS18515 - phosphoglycerate kinase, at 4,231,042 to 4,232,205
_RS18515
DDA3937_RS18520: DDA3937_RS18520 - erythrose-4-phosphate dehydrogenase, at 4,232,273 to 4,233,289
_RS18520
Position (kb) 4231
4232
4233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4230.557 kb on + strand at 4230.885 kb on - strand at 4230.885 kb on - strand at 4230.885 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.888 kb on - strand at 4230.901 kb on - strand at 4230.952 kb on - strand at 4230.952 kb on - strand at 4230.964 kb on - strand at 4230.964 kb on - strand at 4231.026 kb on - strand at 4232.455 kb on + strand at 4232.457 kb on + strand, within DDA3937_RS18520 at 4232.457 kb on + strand, within DDA3937_RS18520 at 4232.458 kb on - strand, within DDA3937_RS18520 at 4232.465 kb on + strand, within DDA3937_RS18520 at 4232.466 kb on - strand, within DDA3937_RS18520 at 4232.466 kb on - strand, within DDA3937_RS18520 at 4232.466 kb on - strand, within DDA3937_RS18520 at 4232.466 kb on - strand, within DDA3937_RS18520 at 4232.467 kb on + strand, within DDA3937_RS18520 at 4232.479 kb on + strand, within DDA3937_RS18520 at 4232.519 kb on + strand, within DDA3937_RS18520 at 4232.710 kb on - strand, within DDA3937_RS18520 at 4232.710 kb on - strand, within DDA3937_RS18520 at 4232.778 kb on + strand, within DDA3937_RS18520 at 4232.778 kb on + strand, within DDA3937_RS18520 at 4232.810 kb on - strand, within DDA3937_RS18520 at 4232.883 kb on + strand, within DDA3937_RS18520 at 4232.883 kb on + strand, within DDA3937_RS18520 at 4232.931 kb on - strand, within DDA3937_RS18520 at 4232.931 kb on - strand, within DDA3937_RS18520 at 4232.931 kb on - strand, within DDA3937_RS18520 at 4232.982 kb on + strand, within DDA3937_RS18520 at 4232.982 kb on + strand, within DDA3937_RS18520 at 4232.983 kb on - strand, within DDA3937_RS18520 at 4232.983 kb on - strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.984 kb on + strand, within DDA3937_RS18520 at 4232.985 kb on - strand, within DDA3937_RS18520 at 4232.985 kb on - strand, within DDA3937_RS18520 at 4232.985 kb on - strand, within DDA3937_RS18520 at 4232.985 kb on - strand, within DDA3937_RS18520 at 4232.985 kb on - strand, within DDA3937_RS18520 at 4233.067 kb on + strand, within DDA3937_RS18520 at 4233.141 kb on + strand, within DDA3937_RS18520 at 4233.142 kb on - strand, within DDA3937_RS18520 at 4233.145 kb on + strand, within DDA3937_RS18520 at 4233.145 kb on + strand, within DDA3937_RS18520 at 4233.146 kb on - strand, within DDA3937_RS18520 at 4233.146 kb on - strand, within DDA3937_RS18520 at 4233.146 kb on - strand, within DDA3937_RS18520 at 4233.146 kb on - strand, within DDA3937_RS18520 at 4233.184 kb on + strand, within DDA3937_RS18520
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,230,557 + -0.8 4,230,885 - -3.2 4,230,885 - -2.0 4,230,885 - -0.5 4,230,888 - -0.2 4,230,888 - -2.9 4,230,888 - -1.0 4,230,888 - -1.4 4,230,888 - -1.3 4,230,888 - -0.6 4,230,888 - -0.8 4,230,888 - +0.3 4,230,888 - +0.6 4,230,888 - -1.1 4,230,888 - -2.0 4,230,901 - -0.1 4,230,952 - +1.3 4,230,952 - +0.2 4,230,964 - -0.8 4,230,964 - -1.6 4,231,026 - +0.8 4,232,455 + +1.5 4,232,457 + DDA3937_RS18520 0.18 +1.5 4,232,457 + DDA3937_RS18520 0.18 -0.8 4,232,458 - DDA3937_RS18520 0.18 +1.1 4,232,465 + DDA3937_RS18520 0.19 -1.9 4,232,466 - DDA3937_RS18520 0.19 -0.3 4,232,466 - DDA3937_RS18520 0.19 -1.7 4,232,466 - DDA3937_RS18520 0.19 +0.0 4,232,466 - DDA3937_RS18520 0.19 +0.2 4,232,467 + DDA3937_RS18520 0.19 -1.7 4,232,479 + DDA3937_RS18520 0.20 -1.6 4,232,519 + DDA3937_RS18520 0.24 -0.5 4,232,710 - DDA3937_RS18520 0.43 +2.5 4,232,710 - DDA3937_RS18520 0.43 -0.8 4,232,778 + DDA3937_RS18520 0.50 -1.0 4,232,778 + DDA3937_RS18520 0.50 +0.5 4,232,810 - DDA3937_RS18520 0.53 -2.5 4,232,883 + DDA3937_RS18520 0.60 +0.9 4,232,883 + DDA3937_RS18520 0.60 -2.6 4,232,931 - DDA3937_RS18520 0.65 -1.0 4,232,931 - DDA3937_RS18520 0.65 -0.8 4,232,931 - DDA3937_RS18520 0.65 +1.5 4,232,982 + DDA3937_RS18520 0.70 -1.2 4,232,982 + DDA3937_RS18520 0.70 -2.2 4,232,983 - DDA3937_RS18520 0.70 -0.8 4,232,983 - DDA3937_RS18520 0.70 -2.2 4,232,984 + DDA3937_RS18520 0.70 -0.5 4,232,984 + DDA3937_RS18520 0.70 -0.5 4,232,984 + DDA3937_RS18520 0.70 -2.6 4,232,984 + DDA3937_RS18520 0.70 -3.7 4,232,984 + DDA3937_RS18520 0.70 -1.0 4,232,984 + DDA3937_RS18520 0.70 -2.0 4,232,985 - DDA3937_RS18520 0.70 -0.8 4,232,985 - DDA3937_RS18520 0.70 -1.9 4,232,985 - DDA3937_RS18520 0.70 -0.3 4,232,985 - DDA3937_RS18520 0.70 -1.6 4,232,985 - DDA3937_RS18520 0.70 +0.4 4,233,067 + DDA3937_RS18520 0.78 -1.6 4,233,141 + DDA3937_RS18520 0.85 -2.1 4,233,142 - DDA3937_RS18520 0.85 +1.8 4,233,145 + DDA3937_RS18520 0.86 -0.7 4,233,145 + DDA3937_RS18520 0.86 +0.8 4,233,146 - DDA3937_RS18520 0.86 -0.4 4,233,146 - DDA3937_RS18520 0.86 -1.8 4,233,146 - DDA3937_RS18520 0.86 -0.3 4,233,146 - DDA3937_RS18520 0.86 -0.6 4,233,184 + DDA3937_RS18520 0.90 -1.5
Or see this region's nucleotide sequence