Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17860

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,071,140	-		DDA3937_RS17855	0.32	+0.6
4,071,188	+		DDA3937_RS17855	0.35	-1.2
4,071,189	-		DDA3937_RS17855	0.35	-0.1
4,071,189	-		DDA3937_RS17855	0.35	-1.5
4,071,195	+		DDA3937_RS17855	0.35	-3.1
4,071,195	+		DDA3937_RS17855	0.35	+0.6
4,071,195	+		DDA3937_RS17855	0.35	-0.1
4,071,196	-		DDA3937_RS17855	0.36	-2.8
4,071,196	-		DDA3937_RS17855	0.36	-2.7
4,071,202	-		DDA3937_RS17855	0.36	+0.6
4,071,202	-		DDA3937_RS17855	0.36	+0.1
4,071,202	-		DDA3937_RS17855	0.36	+1.5
4,071,228	+		DDA3937_RS17855	0.38	-2.8
4,071,258	+		DDA3937_RS17855	0.40	+0.6
4,071,258	+		DDA3937_RS17855	0.40	+0.2
4,071,282	+		DDA3937_RS17855	0.42	+0.3
4,071,282	+		DDA3937_RS17855	0.42	+1.6
4,071,283	-		DDA3937_RS17855	0.42	-1.8
4,071,283	-		DDA3937_RS17855	0.42	+0.1
4,071,283	-		DDA3937_RS17855	0.42	-1.9
4,071,283	-		DDA3937_RS17855	0.42	+0.5
4,071,342	+		DDA3937_RS17855	0.46	+2.3
4,071,503	+		DDA3937_RS17855	0.57	-2.7
4,071,503	+		DDA3937_RS17855	0.57	+0.6
4,071,504	-		DDA3937_RS17855	0.57	-0.3
4,071,504	-		DDA3937_RS17855	0.57	+0.5
4,071,577	-		DDA3937_RS17855	0.62	-3.6
4,071,700	+		DDA3937_RS17855	0.71	-1.2
4,071,711	+		DDA3937_RS17855	0.72	+1.1
4,071,711	+		DDA3937_RS17855	0.72	-0.9
4,071,712	-		DDA3937_RS17855	0.72	-0.5
4,071,715	+		DDA3937_RS17855	0.72	-0.1
4,071,716	-		DDA3937_RS17855	0.72	-1.0
4,071,716	-		DDA3937_RS17855	0.72	+1.0
4,071,716	-		DDA3937_RS17855	0.72	+0.9
4,071,716	-		DDA3937_RS17855	0.72	-2.1
4,071,720	+		DDA3937_RS17855	0.72	-1.7
4,071,720	+		DDA3937_RS17855	0.72	-3.4
4,071,721	-		DDA3937_RS17855	0.72	+0.1
4,071,721	-		DDA3937_RS17855	0.72	-0.5
4,071,721	-		DDA3937_RS17855	0.72	+1.0
4,071,721	-		DDA3937_RS17855	0.72	+1.8
4,071,848	+		DDA3937_RS17855	0.81	-0.2
4,071,888	+		DDA3937_RS17855	0.84	-2.2
4,071,888	+		DDA3937_RS17855	0.84	+1.1
4,071,888	+		DDA3937_RS17855	0.84	-1.3
4,071,889	-		DDA3937_RS17855	0.84	-1.5
4,071,889	-		DDA3937_RS17855	0.84	-2.1
4,071,889	-		DDA3937_RS17855	0.84	-2.3
4,071,889	-		DDA3937_RS17855	0.84	+0.7
4,071,905	+		DDA3937_RS17855	0.85	-2.8
4,071,963	+		DDA3937_RS17855	0.89	-1.9
4,071,963	+		DDA3937_RS17855	0.89	-0.8
4,071,967	+		DDA3937_RS17855	0.90	-0.6
4,071,967	+		DDA3937_RS17855	0.90	+1.2
4,071,967	+		DDA3937_RS17855	0.90	-2.0
4,071,967	+		DDA3937_RS17855	0.90	-0.1
4,071,967	+		DDA3937_RS17855	0.90	-1.2
4,071,967	+		DDA3937_RS17855	0.90	-1.2
4,071,968	-		DDA3937_RS17855	0.90	+0.4
4,071,968	-		DDA3937_RS17855	0.90	+1.7
4,071,968	-		DDA3937_RS17855	0.90	-1.0
4,071,995	+				+2.3
4,071,995	+				+0.3
4,071,995	+				-0.4
4,071,995	+				-0.3
4,071,995	+				+0.8
4,071,995	+				-2.1
4,071,995	+				-1.0
4,071,995	+				+0.9
4,071,995	+				-0.8
4,071,996	-				+2.1
4,071,996	-				-3.1
4,071,996	-				-2.5
4,071,996	-				-3.1
4,071,996	-				+0.0
4,071,999	+				-1.2
4,071,999	+				-0.6
4,071,999	+				-2.2
4,071,999	+				-1.7
4,071,999	+				-0.1
4,071,999	+				+0.0
4,072,000	-				-0.4
4,072,000	-				+2.2
4,072,000	-				-2.0
4,072,000	-				-0.5
4,072,000	-				-2.0
4,072,000	-				-0.9
4,072,000	-				-0.6
4,072,110	+				-3.7
4,072,110	+				+0.7
4,072,110	+				+1.3
4,072,110	+				-0.0
4,072,110	+				-0.2
4,072,110	+				+1.0
4,072,110	+				+1.5
4,072,111	-				+0.9
4,072,111	-				+0.4
4,072,111	-				-2.3
4,072,111	-				-0.6
4,072,111	-				-3.2
4,072,111	-				-2.4
4,072,115	-				-1.9
4,072,115	-				+0.3
4,072,136	+				+0.1
4,072,137	-				+1.1
4,072,137	-				-0.6
4,072,197	+				-1.3
4,072,197	+				-1.7
4,072,197	+				-2.6
4,072,197	+				-0.7
4,072,197	+				-1.1
4,072,197	+				-2.0
4,072,197	+				+0.6
4,072,197	+				+2.5
4,072,198	-				-1.6
4,072,198	-				-0.4
4,072,198	-				-0.5
4,072,306	+		DDA3937_RS17860	0.16	+2.7
4,072,306	+		DDA3937_RS17860	0.16	+0.5
4,072,306	+		DDA3937_RS17860	0.16	+1.4
4,072,307	-		DDA3937_RS17860	0.16	-1.5
4,072,307	-		DDA3937_RS17860	0.16	+0.4
4,072,440	+		DDA3937_RS17860	0.27	+0.4
4,072,440	+		DDA3937_RS17860	0.27	+0.1
4,072,441	-		DDA3937_RS17860	0.27	-1.8
4,072,509	+		DDA3937_RS17860	0.33	-1.9
4,072,611	+		DDA3937_RS17860	0.42	-0.1
4,072,611	+		DDA3937_RS17860	0.42	+2.5
4,072,612	-		DDA3937_RS17860	0.42	+0.6
4,072,612	-		DDA3937_RS17860	0.42	-1.0
4,072,688	+		DDA3937_RS17860	0.48	-1.7
4,072,732	+		DDA3937_RS17860	0.52	-2.8
4,072,732	+		DDA3937_RS17860	0.52	-1.8
4,072,732	+		DDA3937_RS17860	0.52	+0.8
4,072,733	-		DDA3937_RS17860	0.52	-1.0
4,072,746	-		DDA3937_RS17860	0.53	-0.2
4,072,746	-		DDA3937_RS17860	0.53	+1.4
4,072,746	-		DDA3937_RS17860	0.53	-1.5
4,072,802	+		DDA3937_RS17860	0.58	-0.8
4,072,802	+		DDA3937_RS17860	0.58	+0.5
4,072,883	+		DDA3937_RS17860	0.65	-3.0
4,072,974	+		DDA3937_RS17860	0.73	-2.4
4,072,974	+		DDA3937_RS17860	0.73	+0.6
4,072,974	+		DDA3937_RS17860	0.73	+0.2
4,073,234	+				+0.8
4,073,238	+				+0.6
4,073,239	-				-1.8
4,073,259	+				+0.5
4,073,259	+				-0.8
4,073,260	-				+0.9
4,073,260	-				-2.3
4,073,260	-				-2.0
4,073,456	+				-1.0
4,073,456	+				+1.2
4,073,457	-				+0.5
4,073,523	+		DDA3937_RS17865	0.19	-3.6
4,073,546	+		DDA3937_RS17865	0.23	-2.5
4,073,547	-		DDA3937_RS17865	0.24	+1.7
4,073,547	-		DDA3937_RS17865	0.24	-0.7
4,073,573	+		DDA3937_RS17865	0.29	-0.2
4,073,573	+		DDA3937_RS17865	0.29	-0.3
4,073,645	-		DDA3937_RS17865	0.44	-0.5
4,073,645	-		DDA3937_RS17865	0.44	-2.8
4,073,801	+		DDA3937_RS17865	0.77	+2.3
4,073,802	-		DDA3937_RS17865	0.77	-1.1
4,073,889	+				-0.9
4,073,889	+				-1.5
4,073,889	+				-2.9
4,073,937	+				-0.1
4,074,212	-		DDA3937_RS17870	0.43	+1.2
4,074,212	-		DDA3937_RS17870	0.43	-0.7