Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17635

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,015,716	+				+1.2
4,015,716	+				+1.5
4,015,716	+				+1.5
4,015,716	+				+0.6
4,015,716	+				-0.4
4,015,716	+				-1.7
4,015,716	+				+0.5
4,015,717	-				+0.2
4,015,735	+				-0.3
4,015,735	+				-0.0
4,015,735	+				-2.1
4,015,735	+				-1.8
4,015,735	+				+0.1
4,015,736	-				+1.1
4,015,750	+				+2.5
4,015,890	+		DDA3937_RS17630	0.16	+0.7
4,015,948	-		DDA3937_RS17630	0.24	-2.4
4,016,008	+		DDA3937_RS17630	0.31	-3.0
4,016,008	+		DDA3937_RS17630	0.31	-1.5
4,016,008	+		DDA3937_RS17630	0.31	-2.1
4,016,008	+		DDA3937_RS17630	0.31	+0.5
4,016,009	-		DDA3937_RS17630	0.31	-0.7
4,016,009	-		DDA3937_RS17630	0.31	-1.1
4,016,047	+		DDA3937_RS17630	0.36	-2.1
4,016,057	-		DDA3937_RS17630	0.37	+0.6
4,016,058	+		DDA3937_RS17630	0.37	+1.1
4,016,058	+		DDA3937_RS17630	0.37	+0.8
4,016,058	+		DDA3937_RS17630	0.37	+1.2
4,016,059	-		DDA3937_RS17630	0.38	-0.5
4,016,063	+		DDA3937_RS17630	0.38	-2.6
4,016,063	+		DDA3937_RS17630	0.38	-0.5
4,016,063	+		DDA3937_RS17630	0.38	-1.0
4,016,064	-		DDA3937_RS17630	0.38	+0.9
4,016,064	-		DDA3937_RS17630	0.38	-3.3
4,016,064	-		DDA3937_RS17630	0.38	-3.7
4,016,064	-		DDA3937_RS17630	0.38	-1.8
4,016,106	+		DDA3937_RS17630	0.43	-3.0
4,016,179	-		DDA3937_RS17630	0.53	-1.5
4,016,197	-		DDA3937_RS17630	0.55	+0.1
4,016,444	-		DDA3937_RS17630	0.86	-3.7
4,016,460	-		DDA3937_RS17630	0.88	-0.6
4,016,493	+				-0.6
4,016,551	-				-2.0
4,016,581	-				+0.1
4,016,581	-				-2.8
4,016,615	-				-0.2
4,016,617	+				+2.0
4,016,641	+				-2.0
4,016,646	-				-1.7
4,016,673	-				-0.8
4,016,674	+				+0.3
4,016,674	+				+1.5
4,016,675	-				-1.5
4,016,728	+				-1.5
4,016,728	+				-4.2
4,016,729	-				-1.5
4,016,730	+				+0.2
4,016,731	-				-0.0
4,016,800	+				+0.7
4,016,800	+				-0.3
4,016,841	+				-2.6
4,016,842	-				-0.3
4,016,856	+				-3.6
4,016,856	+				-0.3
4,016,857	-		DDA3937_RS17635	0.10	-0.8
4,016,862	+		DDA3937_RS17635	0.10	+2.3
4,016,862	+		DDA3937_RS17635	0.10	-1.7
4,016,863	-		DDA3937_RS17635	0.10	-2.4
4,016,882	-		DDA3937_RS17635	0.12	-1.5
4,016,994	+		DDA3937_RS17635	0.19	-0.5
4,017,010	+		DDA3937_RS17635	0.20	+0.1
4,017,010	+		DDA3937_RS17635	0.20	-1.8
4,017,011	-		DDA3937_RS17635	0.20	-2.1
4,017,013	+		DDA3937_RS17635	0.20	-0.8
4,017,013	+		DDA3937_RS17635	0.20	-2.9
4,017,013	+		DDA3937_RS17635	0.20	+0.8
4,017,014	-		DDA3937_RS17635	0.20	-2.0
4,017,014	-		DDA3937_RS17635	0.20	-3.2
4,017,014	-		DDA3937_RS17635	0.20	-2.5
4,017,014	-		DDA3937_RS17635	0.20	+1.1
4,017,014	-		DDA3937_RS17635	0.20	-0.8
4,017,014	-		DDA3937_RS17635	0.20	-1.5
4,017,055	+		DDA3937_RS17635	0.23	-1.8
4,017,055	+		DDA3937_RS17635	0.23	+0.9
4,017,055	+		DDA3937_RS17635	0.23	-0.8
4,017,056	-				-0.5
4,017,056	-		DDA3937_RS17635	0.23	+0.9
4,017,056	-		DDA3937_RS17635	0.23	-0.5
4,017,056	-		DDA3937_RS17635	0.23	-0.7
4,017,060	+		DDA3937_RS17635	0.23	+0.2
4,017,060	+		DDA3937_RS17635	0.23	-3.1
4,017,060	+				+0.5
4,017,060	+		DDA3937_RS17635	0.23	+0.3
4,017,061	-		DDA3937_RS17635	0.23	+0.4
4,017,061	-				+4.5
4,017,061	-		DDA3937_RS17635	0.23	+0.4
4,017,061	-		DDA3937_RS17635	0.23	+0.8
4,017,147	+		DDA3937_RS17635	0.29	-2.9
4,017,201	-		DDA3937_RS17635	0.32	-1.5
4,017,201	-		DDA3937_RS17635	0.32	-1.7
4,017,201	-		DDA3937_RS17635	0.32	-1.3
4,017,275	-		DDA3937_RS17635	0.37	-0.7
4,017,275	-		DDA3937_RS17635	0.37	+0.0
4,017,275	-		DDA3937_RS17635	0.37	-1.8
4,017,275	-		DDA3937_RS17635	0.37	+1.6
4,017,276	+		DDA3937_RS17635	0.37	+0.5
4,017,340	+		DDA3937_RS17635	0.41	-0.8
4,017,340	+		DDA3937_RS17635	0.41	-1.2
4,017,340	+		DDA3937_RS17635	0.41	-2.1
4,017,341	-		DDA3937_RS17635	0.41	-1.6
4,017,341	-		DDA3937_RS17635	0.41	-0.5
4,017,341	-		DDA3937_RS17635	0.41	-2.1
4,017,341	-		DDA3937_RS17635	0.41	+0.7
4,017,341	-		DDA3937_RS17635	0.41	+1.3
4,017,362	-		DDA3937_RS17635	0.43	-0.2
4,017,362	-		DDA3937_RS17635	0.43	+0.7
4,017,423	+		DDA3937_RS17635	0.46	+1.3
4,017,522	+		DDA3937_RS17635	0.53	-1.1
4,017,523	-		DDA3937_RS17635	0.53	+0.1
4,017,612	+		DDA3937_RS17635	0.59	+1.4
4,017,612	+		DDA3937_RS17635	0.59	+0.4
4,017,613	-		DDA3937_RS17635	0.59	-3.3
4,017,640	+		DDA3937_RS17635	0.60	-3.2
4,017,640	+		DDA3937_RS17635	0.60	-2.0
4,017,712	+		DDA3937_RS17635	0.65	+0.4
4,017,712	+		DDA3937_RS17635	0.65	-0.4
4,017,712	+		DDA3937_RS17635	0.65	-1.6
4,017,712	+		DDA3937_RS17635	0.65	-0.4
4,017,712	+		DDA3937_RS17635	0.65	+0.8
4,017,713	-		DDA3937_RS17635	0.65	-1.0
4,017,713	-		DDA3937_RS17635	0.65	-3.2
4,017,713	-		DDA3937_RS17635	0.65	-3.3
4,017,713	-		DDA3937_RS17635	0.65	-1.7
4,017,713	-		DDA3937_RS17635	0.65	-1.1
4,017,931	+		DDA3937_RS17635	0.79	+1.3
4,017,994	+		DDA3937_RS17635	0.83	-0.8
4,017,995	-		DDA3937_RS17635	0.83	-1.5
4,017,995	-		DDA3937_RS17635	0.83	-0.3
4,018,020	+		DDA3937_RS17635	0.85	-3.0
4,018,020	+		DDA3937_RS17635	0.85	-2.8
4,018,020	+		DDA3937_RS17635	0.85	+1.2
4,018,021	-		DDA3937_RS17635	0.85	+0.9
4,018,021	-		DDA3937_RS17635	0.85	+1.3
4,018,172	+				-2.5
4,018,173	-				+1.1
4,018,198	-				-1.0
4,018,216	-				+2.2
4,018,225	-				-0.5
4,018,283	+				+1.0
4,018,291	+				-0.3
4,018,291	+				-1.1
4,018,291	+				+0.1
4,018,291	+				-0.1
4,018,292	-				-0.6
4,018,292	-				-0.6
4,018,295	+				-0.8
4,018,296	-				-2.0
4,018,296	-				-1.2
4,018,296	-				-1.7
4,018,343	+				+0.8
4,018,343	+				-1.5
4,018,344	-				+2.1
4,018,401	+		DDA3937_RS17640	0.20	+0.2
4,018,401	+		DDA3937_RS17640	0.20	+1.0
4,018,402	-		DDA3937_RS17640	0.20	-0.3
4,018,560	+		DDA3937_RS17640	0.53	+0.6
4,018,561	-				+0.5
4,018,561	-		DDA3937_RS17640	0.54	-2.0
4,018,567	+		DDA3937_RS17640	0.55	-0.7
4,018,567	+		DDA3937_RS17640	0.55	-1.2
4,018,568	-		DDA3937_RS17640	0.55	-3.2
4,018,777	+				-1.5
4,018,777	+				-1.3
4,018,777	+				-0.1
4,018,777	+				-0.6
4,018,778	-				-0.4
4,018,778	-				-2.0
4,018,778	-				+0.7
4,018,778	-				+2.9
4,018,778	-				+1.1
4,018,849	-				-1.4
4,018,921	+		DDA3937_RS17645	0.11	-2.7
4,019,025	+		DDA3937_RS17645	0.33	-0.4
4,019,026	-		DDA3937_RS17645	0.34	+1.7
4,019,035	+		DDA3937_RS17645	0.35	-1.8
4,019,036	-		DDA3937_RS17645	0.36	+0.5
4,019,036	-		DDA3937_RS17645	0.36	-2.5
4,019,036	-		DDA3937_RS17645	0.36	+1.8
4,019,038	+		DDA3937_RS17645	0.36	+1.5
4,019,038	+		DDA3937_RS17645	0.36	+2.2
4,019,038	+		DDA3937_RS17645	0.36	-0.6
4,019,039	-		DDA3937_RS17645	0.36	-0.1
4,019,039	-		DDA3937_RS17645	0.36	-1.8
4,019,039	-		DDA3937_RS17645	0.36	-0.8
4,019,121	+		DDA3937_RS17645	0.54	+3.3
4,019,121	+		DDA3937_RS17645	0.54	-0.1
4,019,224	+		DDA3937_RS17645	0.76	-2.8