Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16985

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,860,323	-		DDA3937_RS16980	0.19	-0.8
3,860,346	-		DDA3937_RS16980	0.21	-1.1
3,860,378	+		DDA3937_RS16980	0.24	-0.6
3,860,379	-		DDA3937_RS16980	0.24	-4.2
3,860,379	-		DDA3937_RS16980	0.24	+2.0
3,860,379	-		DDA3937_RS16980	0.24	-0.6
3,860,379	-		DDA3937_RS16980	0.24	+0.4
3,860,403	+		DDA3937_RS16980	0.26	+0.4
3,860,403	+		DDA3937_RS16980	0.26	-0.5
3,860,404	-		DDA3937_RS16980	0.26	-0.7
3,860,404	-		DDA3937_RS16980	0.26	+0.9
3,860,430	-		DDA3937_RS16980	0.29	-0.4
3,860,663	+		DDA3937_RS16980	0.49	+2.3
3,860,663	+		DDA3937_RS16980	0.49	+0.1
3,860,664	-		DDA3937_RS16980	0.49	-2.4
3,860,664	-		DDA3937_RS16980	0.49	-0.2
3,860,777	+		DDA3937_RS16980	0.59	-1.4
3,860,778	-		DDA3937_RS16980	0.59	-0.1
3,860,778	-		DDA3937_RS16980	0.59	-0.3
3,860,785	-		DDA3937_RS16980	0.60	-1.3
3,860,785	-		DDA3937_RS16980	0.60	-1.7
3,860,785	-		DDA3937_RS16980	0.60	+1.6
3,860,822	+		DDA3937_RS16980	0.63	-1.4
3,860,822	+		DDA3937_RS16980	0.63	-1.0
3,860,822	+		DDA3937_RS16980	0.63	-3.3
3,860,822	+		DDA3937_RS16980	0.63	-2.6
3,860,822	+		DDA3937_RS16980	0.63	-2.5
3,860,822	+		DDA3937_RS16980	0.63	-2.3
3,860,822	+		DDA3937_RS16980	0.63	-1.1
3,860,822	+		DDA3937_RS16980	0.63	-1.0
3,860,822	+		DDA3937_RS16980	0.63	-1.9
3,860,823	-		DDA3937_RS16980	0.63	-1.5
3,860,823	-		DDA3937_RS16980	0.63	-0.0
3,860,823	-		DDA3937_RS16980	0.63	+0.6
3,860,823	-		DDA3937_RS16980	0.63	-2.4
3,860,853	-		DDA3937_RS16980	0.66	-2.2
3,860,914	+		DDA3937_RS16980	0.71	-1.8
3,860,914	+		DDA3937_RS16980	0.71	-2.3
3,860,914	+		DDA3937_RS16980	0.71	-0.9
3,860,914	+		DDA3937_RS16980	0.71	+0.7
3,860,914	+		DDA3937_RS16980	0.71	-0.1
3,860,914	+		DDA3937_RS16980	0.71	-1.1
3,860,915	-		DDA3937_RS16980	0.71	+0.1
3,860,915	-		DDA3937_RS16980	0.71	+1.0
3,860,915	-		DDA3937_RS16980	0.71	-3.1
3,860,915	-		DDA3937_RS16980	0.71	-2.1
3,860,915	-		DDA3937_RS16980	0.71	-1.7
3,860,979	+		DDA3937_RS16980	0.77	-0.3
3,861,014	+		DDA3937_RS16980	0.80	-2.6
3,861,014	+		DDA3937_RS16980	0.80	-3.3
3,861,014	+		DDA3937_RS16980	0.80	-3.0
3,861,015	-		DDA3937_RS16980	0.80	-2.1
3,861,020	+		DDA3937_RS16980	0.80	-0.7
3,861,020	+		DDA3937_RS16980	0.80	-0.4
3,861,020	+		DDA3937_RS16980	0.80	+0.0
3,861,020	+		DDA3937_RS16980	0.80	+3.3
3,861,020	+		DDA3937_RS16980	0.80	-2.1
3,861,021	-		DDA3937_RS16980	0.80	-0.3
3,861,021	-		DDA3937_RS16980	0.80	-0.1
3,861,030	-		DDA3937_RS16980	0.81	+1.4
3,861,076	-		DDA3937_RS16980	0.85	-1.0
3,861,076	-		DDA3937_RS16980	0.85	+1.1
3,861,123	+		DDA3937_RS16980	0.89	-1.0
3,861,123	+		DDA3937_RS16980	0.89	+2.4
3,861,173	-				-2.5
3,861,194	+				-0.1
3,861,194	+				-1.6
3,861,195	-				-1.9
3,861,219	+				-3.0
3,861,220	-				-0.8
3,861,220	-				-0.3
3,861,243	+				-1.6
3,861,243	+				-1.6
3,861,243	+				-2.0
3,861,243	+				+0.3
3,861,244	-				-0.1
3,861,251	-				+0.6
3,861,269	+				-0.1
3,861,290	+				+1.2
3,861,290	+				-0.1
3,861,290	+				+0.5
3,861,291	-				-1.1
3,861,291	-				+4.9
3,861,390	+				+0.4
3,861,567	-		DDA3937_RS16985	0.15	-3.1
3,861,567	-		DDA3937_RS16985	0.15	-1.1
3,861,739	+		DDA3937_RS16985	0.26	+0.9
3,861,740	-		DDA3937_RS16985	0.26	+0.4
3,861,740	-		DDA3937_RS16985	0.26	-1.0
3,861,742	+		DDA3937_RS16985	0.27	+1.1
3,861,742	+		DDA3937_RS16985	0.27	+2.1
3,861,799	+		DDA3937_RS16985	0.30	-0.2
3,861,800	-		DDA3937_RS16985	0.30	-1.0
3,861,801	+		DDA3937_RS16985	0.30	-0.4
3,861,801	+		DDA3937_RS16985	0.30	+0.4
3,861,801	+		DDA3937_RS16985	0.30	-1.8
3,861,801	+		DDA3937_RS16985	0.30	+0.9
3,861,801	+		DDA3937_RS16985	0.30	+1.0
3,861,801	+		DDA3937_RS16985	0.30	-2.1
3,861,801	+		DDA3937_RS16985	0.30	+1.2
3,861,801	+				-0.1
3,861,801	+		DDA3937_RS16985	0.30	+0.6
3,861,801	+		DDA3937_RS16985	0.30	-0.4
3,861,801	+		DDA3937_RS16985	0.30	-1.4
3,861,801	+		DDA3937_RS16985	0.30	-0.3
3,861,801	+		DDA3937_RS16985	0.30	-1.6
3,861,801	+		DDA3937_RS16985	0.30	-2.6
3,861,801	+		DDA3937_RS16985	0.30	-3.3
3,861,802	-		DDA3937_RS16985	0.30	+1.2
3,861,802	-		DDA3937_RS16985	0.30	+0.4
3,861,802	-		DDA3937_RS16985	0.30	-0.6
3,861,802	-		DDA3937_RS16985	0.30	-1.3
3,861,802	-		DDA3937_RS16985	0.30	-0.2
3,861,805	+		DDA3937_RS16985	0.31	-1.4
3,861,805	+		DDA3937_RS16985	0.31	-3.6
3,861,805	+		DDA3937_RS16985	0.31	+0.8
3,861,805	+		DDA3937_RS16985	0.31	+0.1
3,861,805	+		DDA3937_RS16985	0.31	+0.2
3,861,805	+		DDA3937_RS16985	0.31	-0.3
3,861,806	-		DDA3937_RS16985	0.31	+0.7
3,861,806	-		DDA3937_RS16985	0.31	+1.2
3,861,806	-		DDA3937_RS16985	0.31	-1.7
3,861,806	-				+0.4
3,861,806	-		DDA3937_RS16985	0.31	-0.0
3,861,806	-		DDA3937_RS16985	0.31	-0.7
3,861,806	-		DDA3937_RS16985	0.31	-2.3
3,861,806	-		DDA3937_RS16985	0.31	-1.8
3,861,806	-		DDA3937_RS16985	0.31	-0.3
3,861,806	-		DDA3937_RS16985	0.31	+1.3
3,861,806	-		DDA3937_RS16985	0.31	-2.1
3,861,806	-		DDA3937_RS16985	0.31	+1.5
3,861,807	+		DDA3937_RS16985	0.31	-0.1
3,861,807	+		DDA3937_RS16985	0.31	-1.6
3,861,807	+		DDA3937_RS16985	0.31	+2.7
3,861,807	+		DDA3937_RS16985	0.31	-0.6
3,861,807	+		DDA3937_RS16985	0.31	+0.1
3,861,807	+		DDA3937_RS16985	0.31	-1.6
3,861,807	+		DDA3937_RS16985	0.31	+1.0
3,861,807	+		DDA3937_RS16985	0.31	-0.3
3,861,807	+		DDA3937_RS16985	0.31	-1.5
3,861,807	+		DDA3937_RS16985	0.31	-0.6
3,861,807	+		DDA3937_RS16985	0.31	-1.1
3,861,807	+		DDA3937_RS16985	0.31	+0.1
3,861,807	+				+0.4
3,861,807	+		DDA3937_RS16985	0.31	-0.1
3,861,807	+		DDA3937_RS16985	0.31	+0.5
3,861,807	+				+0.4
3,861,807	+		DDA3937_RS16985	0.31	-2.6
3,861,807	+		DDA3937_RS16985	0.31	-2.3
3,861,807	+		DDA3937_RS16985	0.31	-2.3
3,861,807	+		DDA3937_RS16985	0.31	-2.3
3,861,807	+		DDA3937_RS16985	0.31	-2.0
3,861,807	+		DDA3937_RS16985	0.31	+0.1
3,861,807	+		DDA3937_RS16985	0.31	+0.1
3,861,807	+		DDA3937_RS16985	0.31	+0.6
3,861,807	+		DDA3937_RS16985	0.31	-0.3
3,861,808	-		DDA3937_RS16985	0.31	-1.6
3,861,808	-		DDA3937_RS16985	0.31	-0.6
3,861,808	-		DDA3937_RS16985	0.31	-0.4
3,861,808	-		DDA3937_RS16985	0.31	+3.1
3,861,808	-		DDA3937_RS16985	0.31	+1.6
3,861,808	-		DDA3937_RS16985	0.31	-0.3
3,861,808	-		DDA3937_RS16985	0.31	-2.7
3,861,808	-		DDA3937_RS16985	0.31	-0.8
3,861,808	-		DDA3937_RS16985	0.31	+0.5
3,861,808	-		DDA3937_RS16985	0.31	+0.3
3,861,808	-		DDA3937_RS16985	0.31	+0.5
3,861,808	-		DDA3937_RS16985	0.31	-0.6
3,861,808	-		DDA3937_RS16985	0.31	+0.7
3,861,808	-		DDA3937_RS16985	0.31	-2.1
3,861,808	-		DDA3937_RS16985	0.31	-1.6
3,861,808	-		DDA3937_RS16985	0.31	-0.6
3,861,808	-		DDA3937_RS16985	0.31	+1.9
3,861,808	-		DDA3937_RS16985	0.31	+0.4
3,861,808	-		DDA3937_RS16985	0.31	-2.1
3,861,808	-		DDA3937_RS16985	0.31	-1.4
3,861,808	-		DDA3937_RS16985	0.31	+0.5
3,861,811	+		DDA3937_RS16985	0.31	-1.8
3,861,811	+		DDA3937_RS16985	0.31	+1.1
3,861,811	+		DDA3937_RS16985	0.31	-2.3
3,861,811	+		DDA3937_RS16985	0.31	-1.1
3,861,811	+		DDA3937_RS16985	0.31	+0.2
3,861,812	-		DDA3937_RS16985	0.31	-3.3
3,861,812	-		DDA3937_RS16985	0.31	-1.7
3,861,812	-		DDA3937_RS16985	0.31	+0.9
3,861,825	+		DDA3937_RS16985	0.32	-2.0
3,861,825	+		DDA3937_RS16985	0.32	+0.8
3,861,825	+		DDA3937_RS16985	0.32	-0.6
3,861,825	+		DDA3937_RS16985	0.32	+1.4
3,861,825	+		DDA3937_RS16985	0.32	+0.7
3,861,825	+		DDA3937_RS16985	0.32	+1.4
3,861,825	+		DDA3937_RS16985	0.32	-1.9
3,861,825	+		DDA3937_RS16985	0.32	+0.7
3,861,825	+		DDA3937_RS16985	0.32	-1.6
3,861,825	+		DDA3937_RS16985	0.32	-2.6
3,861,825	+		DDA3937_RS16985	0.32	+0.3
3,861,825	+		DDA3937_RS16985	0.32	-0.2
3,861,825	+		DDA3937_RS16985	0.32	-2.6
3,861,825	+		DDA3937_RS16985	0.32	+1.8
3,861,826	-		DDA3937_RS16985	0.32	-0.9
3,861,826	-		DDA3937_RS16985	0.32	-2.5
3,861,826	-		DDA3937_RS16985	0.32	+0.4
3,861,826	-		DDA3937_RS16985	0.32	-0.4
3,861,826	-		DDA3937_RS16985	0.32	-2.6
3,861,826	-		DDA3937_RS16985	0.32	+0.9
3,861,826	-		DDA3937_RS16985	0.32	-3.4
3,861,826	-		DDA3937_RS16985	0.32	-2.8
3,861,903	+		DDA3937_RS16985	0.37	+1.6
3,861,903	+		DDA3937_RS16985	0.37	-0.9
3,861,903	+		DDA3937_RS16985	0.37	-0.6
3,861,904	-		DDA3937_RS16985	0.37	+0.2
3,861,904	-		DDA3937_RS16985	0.37	-0.6
3,861,904	-		DDA3937_RS16985	0.37	-1.6
3,861,906	+		DDA3937_RS16985	0.37	+1.3
3,861,906	+		DDA3937_RS16985	0.37	+0.4
3,861,906	+		DDA3937_RS16985	0.37	+0.9
3,861,918	+		DDA3937_RS16985	0.38	-2.5
3,862,015	+		DDA3937_RS16985	0.44	-2.1
3,862,082	+		DDA3937_RS16985	0.48	-0.8
3,862,082	+		DDA3937_RS16985	0.48	-1.1
3,862,083	-		DDA3937_RS16985	0.48	-0.9
3,862,083	-		DDA3937_RS16985	0.48	+2.1
3,862,089	+		DDA3937_RS16985	0.49	-0.3
3,862,089	+		DDA3937_RS16985	0.49	-1.4
3,862,089	+		DDA3937_RS16985	0.49	-2.3
3,862,089	+		DDA3937_RS16985	0.49	+0.8
3,862,089	+		DDA3937_RS16985	0.49	-2.1
3,862,090	-		DDA3937_RS16985	0.49	-0.7
3,862,090	-		DDA3937_RS16985	0.49	+1.0
3,862,090	-		DDA3937_RS16985	0.49	-2.7
3,862,090	-		DDA3937_RS16985	0.49	+0.6
3,862,090	-		DDA3937_RS16985	0.49	-2.4
3,862,090	-		DDA3937_RS16985	0.49	-1.6
3,862,090	-		DDA3937_RS16985	0.49	-1.1
3,862,090	-		DDA3937_RS16985	0.49	-1.6
3,862,090	-		DDA3937_RS16985	0.49	-2.3
3,862,090	-		DDA3937_RS16985	0.49	+0.0
3,862,092	+		DDA3937_RS16985	0.49	-3.0
3,862,092	+		DDA3937_RS16985	0.49	+0.7
3,862,092	+		DDA3937_RS16985	0.49	+0.4
3,862,093	-		DDA3937_RS16985	0.49	+1.7
3,862,093	-		DDA3937_RS16985	0.49	+1.1
3,862,093	-		DDA3937_RS16985	0.49	-1.6
3,862,129	-		DDA3937_RS16985	0.51	-1.2
3,862,129	-		DDA3937_RS16985	0.51	+0.4
3,862,140	+		DDA3937_RS16985	0.52	-1.7
3,862,140	+		DDA3937_RS16985	0.52	+0.5
3,862,140	+		DDA3937_RS16985	0.52	+2.7
3,862,140	+		DDA3937_RS16985	0.52	+0.8
3,862,140	+		DDA3937_RS16985	0.52	-0.6
3,862,140	+		DDA3937_RS16985	0.52	-0.7
3,862,141	-		DDA3937_RS16985	0.52	-0.0
3,862,141	-		DDA3937_RS16985	0.52	+1.0
3,862,141	-		DDA3937_RS16985	0.52	+2.1
3,862,141	-		DDA3937_RS16985	0.52	-2.1
3,862,141	-		DDA3937_RS16985	0.52	-0.1
3,862,141	-		DDA3937_RS16985	0.52	-1.0
3,862,141	-		DDA3937_RS16985	0.52	-2.6
3,862,141	-		DDA3937_RS16985	0.52	-1.1
3,862,141	-		DDA3937_RS16985	0.52	-1.4
3,862,141	-		DDA3937_RS16985	0.52	-4.3
3,862,302	+		DDA3937_RS16985	0.62	-2.0
3,862,303	-		DDA3937_RS16985	0.62	-0.9
3,862,354	-		DDA3937_RS16985	0.65	-0.4
3,862,354	-		DDA3937_RS16985	0.65	-2.0
3,862,512	+		DDA3937_RS16985	0.75	-2.8
3,862,533	+		DDA3937_RS16985	0.77	-1.6
3,862,533	+		DDA3937_RS16985	0.77	-3.3
3,862,533	+		DDA3937_RS16985	0.77	+0.6
3,862,533	+		DDA3937_RS16985	0.77	-1.1
3,862,533	+		DDA3937_RS16985	0.77	-2.4
3,862,533	+		DDA3937_RS16985	0.77	-1.6
3,862,534	-		DDA3937_RS16985	0.77	-0.1
3,862,534	-		DDA3937_RS16985	0.77	+0.8
3,862,534	-		DDA3937_RS16985	0.77	-0.6
3,862,534	-		DDA3937_RS16985	0.77	+1.9
3,862,534	-		DDA3937_RS16985	0.77	-1.9
3,862,534	-		DDA3937_RS16985	0.77	-0.8
3,862,534	-		DDA3937_RS16985	0.77	+0.3
3,862,554	+		DDA3937_RS16985	0.78	-1.4
3,862,554	+		DDA3937_RS16985	0.78	+0.2
3,862,554	+		DDA3937_RS16985	0.78	-1.0
3,862,554	+		DDA3937_RS16985	0.78	-0.6
3,862,554	+		DDA3937_RS16985	0.78	+0.3
3,862,555	-		DDA3937_RS16985	0.78	-0.1
3,862,555	-		DDA3937_RS16985	0.78	+0.7
3,862,555	-		DDA3937_RS16985	0.78	+0.2
3,862,555	-		DDA3937_RS16985	0.78	-0.5
3,862,555	-		DDA3937_RS16985	0.78	-2.0
3,862,555	-		DDA3937_RS16985	0.78	+0.2
3,862,555	-		DDA3937_RS16985	0.78	-1.3
3,862,555	-		DDA3937_RS16985	0.78	-2.6
3,862,555	-		DDA3937_RS16985	0.78	-1.4
3,862,559	-		DDA3937_RS16985	0.78	-0.1
3,862,566	+		DDA3937_RS16985	0.79	+1.7
3,862,566	+		DDA3937_RS16985	0.79	-0.3
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