Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16295

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,712,822	+		DDA3937_RS16290	0.37	+1.7
3,712,823	-		DDA3937_RS16290	0.37	-2.6
3,712,882	+		DDA3937_RS16290	0.41	-1.4
3,712,882	+		DDA3937_RS16290	0.41	-0.9
3,712,882	+		DDA3937_RS16290	0.41	-2.2
3,712,882	+		DDA3937_RS16290	0.41	-2.1
3,712,882	+		DDA3937_RS16290	0.41	-0.7
3,712,883	-		DDA3937_RS16290	0.41	+0.8
3,712,915	+		DDA3937_RS16290	0.43	+1.3
3,712,915	+		DDA3937_RS16290	0.43	-2.5
3,712,916	-		DDA3937_RS16290	0.43	-3.6
3,712,916	-		DDA3937_RS16290	0.43	-0.5
3,712,916	-		DDA3937_RS16290	0.43	-3.4
3,712,916	-		DDA3937_RS16290	0.43	+2.8
3,712,996	+		DDA3937_RS16290	0.49	-2.1
3,712,997	-		DDA3937_RS16290	0.49	-2.9
3,713,062	+		DDA3937_RS16290	0.53	-0.1
3,713,062	+		DDA3937_RS16290	0.53	+0.7
3,713,062	+				+2.5
3,713,062	+		DDA3937_RS16290	0.53	+0.2
3,713,063	-		DDA3937_RS16290	0.53	-2.0
3,713,063	-		DDA3937_RS16290	0.53	-1.4
3,713,063	-		DDA3937_RS16290	0.53	-1.2
3,713,107	-		DDA3937_RS16290	0.56	+4.0
3,713,308	+		DDA3937_RS16290	0.70	-2.9
3,713,308	+		DDA3937_RS16290	0.70	-1.8
3,713,425	+		DDA3937_RS16290	0.78	-1.0
3,713,426	-		DDA3937_RS16290	0.78	-0.6
3,713,426	-		DDA3937_RS16290	0.78	-1.1
3,713,426	-		DDA3937_RS16290	0.78	+1.9
3,713,426	-		DDA3937_RS16290	0.78	-0.5
3,713,426	-		DDA3937_RS16290	0.78	-0.1
3,713,444	-		DDA3937_RS16290	0.79	-1.1
3,713,460	-		DDA3937_RS16290	0.80	-2.0
3,713,474	-		DDA3937_RS16290	0.81	+0.3
3,713,536	-		DDA3937_RS16290	0.85	+0.3
3,713,536	-		DDA3937_RS16290	0.85	-2.5
3,713,554	+		DDA3937_RS16290	0.86	-2.4
3,713,554	+		DDA3937_RS16290	0.86	+2.2
3,713,563	+		DDA3937_RS16290	0.87	+2.9
3,713,563	+		DDA3937_RS16290	0.87	+1.5
3,713,653	+				+3.0
3,713,654	-				-1.1
3,713,654	-				-2.5
3,713,659	+				+0.2
3,713,660	-				-1.1
3,713,660	-				-1.9
3,713,660	-				-0.1
3,713,677	+				-2.5
3,713,677	+				+1.7
3,713,723	+				-1.5
3,713,723	+				-2.3
3,713,724	-				+1.7
3,713,724	-				-2.0
3,713,724	-				-2.1
3,713,724	-				+0.2
3,713,753	-				+2.6
3,714,037	+		DDA3937_RS16295	0.37	-2.0
3,714,040	-		DDA3937_RS16295	0.38	-0.9
3,714,048	+		DDA3937_RS16295	0.39	-1.7
3,714,068	-		DDA3937_RS16295	0.43	+0.5
3,714,068	-		DDA3937_RS16295	0.43	-0.5
3,714,068	-		DDA3937_RS16295	0.43	-2.0
3,714,068	-				+1.5
3,714,280	+		DDA3937_RS16295	0.78	+0.9
3,714,280	+		DDA3937_RS16295	0.78	-3.2
3,714,280	+		DDA3937_RS16295	0.78	-1.2
3,714,280	+		DDA3937_RS16295	0.78	-0.6
3,714,280	+		DDA3937_RS16295	0.78	-1.1
3,714,280	+		DDA3937_RS16295	0.78	-1.9
3,714,280	+		DDA3937_RS16295	0.78	-0.7
3,714,280	+		DDA3937_RS16295	0.78	-2.5
3,714,280	+		DDA3937_RS16295	0.78	-0.5
3,714,281	-		DDA3937_RS16295	0.78	-2.0
3,714,281	-		DDA3937_RS16295	0.78	+0.2
3,714,281	-		DDA3937_RS16295	0.78	+0.6
3,714,281	-		DDA3937_RS16295	0.78	-0.0
3,714,281	-		DDA3937_RS16295	0.78	-0.3
3,714,281	-		DDA3937_RS16295	0.78	-0.2
3,714,395	+				-2.2
3,714,395	+				-2.8
3,714,396	-				+1.2
3,714,407	-				-2.8
3,714,424	+				+2.0
3,714,429	+				+1.5
3,714,474	+				-2.9
3,714,475	-				-0.1
3,714,475	-				+1.7
3,714,475	-				+1.1
3,714,497	+				+0.0
3,714,497	+				+0.2
3,714,497	+				+1.0
3,714,498	-				+1.1
3,714,498	-				-1.6
3,714,498	-				+2.9
3,714,569	+		DDA3937_RS23315	0.76	-3.2
3,714,569	+		DDA3937_RS23315	0.76	-1.8
3,714,570	-		DDA3937_RS23315	0.77	+0.7
3,714,591	+				-0.9
3,714,591	+				-1.1
3,714,592	-				-1.4
3,714,592	-				-2.1
3,714,602	+				-2.9
3,714,602	+				-2.0
3,714,602	+				-0.5
3,714,614	+				-1.1
3,714,614	+				+2.3
3,714,615	-				+1.9
3,714,615	-				-2.1
3,714,615	-				-0.1
3,714,632	+				-0.5
3,714,651	+				-0.5
3,714,652	-				+0.8
3,714,690	-				-2.4
3,714,692	+				-1.4
3,714,693	-				+0.1
3,714,785	-				+1.0
3,714,797	+				-2.7
3,714,797	+				+0.1
3,714,798	-				+0.9
3,714,798	-				+0.3
3,714,798	-				+1.3
3,714,798	-				-1.5
3,714,798	-				-0.2
3,714,798	-				-2.6
3,714,798	-				+1.1
3,714,799	+				-0.7
3,714,800	-				+1.9
3,714,800	-				-1.5
3,714,838	-				-1.2
3,714,886	+				-1.1
3,714,886	+				-2.0
3,714,890	+				-1.4
3,714,894	+				-0.2
3,714,900	+				-1.5
3,714,901	-				-1.1
3,714,902	+				-0.8
3,714,937	+				-1.3
3,715,009	+				-3.0
3,715,039	-				-0.9
3,715,050	+				-2.5
3,715,050	+				-1.6
3,715,050	+				-1.0
3,715,053	-				-0.3
3,715,073	+				-2.5
3,715,073	+				+1.5
3,715,073	+				-1.2
3,715,073	+				-0.9
3,715,074	-				-1.5
3,715,091	+				-0.9
3,715,092	-				-2.2
3,715,092	-				-0.3
3,715,092	-				-1.1
3,715,185	-				+2.3
3,715,199	+				-3.1
3,715,200	-				-2.9
3,715,200	-				+0.7
3,715,200	-				-0.5
3,715,233	+				+0.8
3,715,233	+				-0.5
3,715,234	-				-2.5
3,715,266	+		DDA3937_RS16300	0.18	+0.5
3,715,266	+		DDA3937_RS16300	0.18	+0.7
3,715,266	+		DDA3937_RS16300	0.18	-1.7
3,715,268	+		DDA3937_RS16300	0.18	-2.0
3,715,268	+		DDA3937_RS16300	0.18	-1.0
3,715,269	-		DDA3937_RS16300	0.19	-2.0
3,715,283	+		DDA3937_RS16300	0.23	-1.7
3,715,312	+		DDA3937_RS16300	0.31	-0.7
3,715,356	-				+0.5
3,715,356	-		DDA3937_RS16300	0.44	+2.1
3,715,374	+		DDA3937_RS16300	0.49	+2.0
3,715,374	+		DDA3937_RS16300	0.49	-1.0
3,715,379	+		DDA3937_RS16300	0.50	-3.3