Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15860

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,625,386	+		DDA3937_RS15855	0.35	-2.3
3,625,386	+		DDA3937_RS15855	0.35	+1.1
3,625,387	-		DDA3937_RS15855	0.35	-1.0
3,625,387	-		DDA3937_RS15855	0.35	+0.9
3,625,387	-		DDA3937_RS15855	0.35	-0.9
3,625,387	-		DDA3937_RS15855	0.35	-1.1
3,625,387	-		DDA3937_RS15855	0.35	-0.5
3,625,589	+		DDA3937_RS15855	0.52	-2.3
3,625,589	+		DDA3937_RS15855	0.52	+3.0
3,625,589	+		DDA3937_RS15855	0.52	-0.2
3,625,589	+		DDA3937_RS15855	0.52	-2.7
3,625,589	+		DDA3937_RS15855	0.52	+0.5
3,625,590	-		DDA3937_RS15855	0.52	-1.8
3,625,590	-		DDA3937_RS15855	0.52	-0.4
3,625,782	-		DDA3937_RS15855	0.69	-1.7
3,626,014	+		DDA3937_RS15855	0.89	-0.2
3,626,038	+				+0.4
3,626,068	+				-1.3
3,626,069	-				+0.5
3,626,071	+				-0.7
3,626,075	-				+0.6
3,626,093	-				-0.0
3,626,159	+				-2.7
3,626,179	+				+1.1
3,626,199	+				-2.1
3,626,199	+				+0.6
3,626,199	+				-1.7
3,626,199	+				-2.4
3,626,199	+				-1.6
3,626,199	+				-0.5
3,626,200	-				-3.8
3,626,200	-				+0.2
3,626,200	-				-3.0
3,626,200	-				+2.8
3,626,200	-				-3.8
3,626,200	-				+1.2
3,626,200	-				+0.4
3,626,272	+				-1.2
3,626,272	+				-1.1
3,626,273	-				-0.5
3,626,355	+				-1.3
3,626,355	+				-0.6
3,626,356	-				+0.5
3,626,393	+				-0.3
3,626,404	+				-0.5
3,626,404	+				-2.1
3,626,533	+		DDA3937_RS15860	0.13	-0.9
3,626,533	+		DDA3937_RS15860	0.13	-0.8
3,626,549	-		DDA3937_RS15860	0.14	+0.4
3,626,637	-		DDA3937_RS15860	0.20	-0.5
3,626,637	-				+1.5
3,626,860	+		DDA3937_RS15860	0.36	-2.1
3,626,861	-		DDA3937_RS15860	0.36	-0.8
3,626,959	+		DDA3937_RS15860	0.42	-1.8
3,626,960	-		DDA3937_RS15860	0.43	-0.6
3,627,109	-		DDA3937_RS15860	0.53	-0.8
3,627,109	-		DDA3937_RS15860	0.53	-1.7
3,627,121	+		DDA3937_RS15860	0.54	-0.5
3,627,121	+		DDA3937_RS15860	0.54	-3.3
3,627,122	-		DDA3937_RS15860	0.54	-0.8
3,627,149	-		DDA3937_RS15860	0.55	+0.3
3,627,241	+		DDA3937_RS15860	0.62	-1.4
3,627,241	+		DDA3937_RS15860	0.62	-1.1
3,627,241	+		DDA3937_RS15860	0.62	-0.6
3,627,241	+		DDA3937_RS15860	0.62	+2.4
3,627,241	+				+2.5
3,627,241	+		DDA3937_RS15860	0.62	-3.1
3,627,242	-		DDA3937_RS15860	0.62	+2.7
3,627,328	+		DDA3937_RS15860	0.68	-1.7
3,627,328	+		DDA3937_RS15860	0.68	+0.2
3,627,328	+		DDA3937_RS15860	0.68	+1.5
3,627,328	+		DDA3937_RS15860	0.68	+0.5
3,627,328	+		DDA3937_RS15860	0.68	+0.2
3,627,329	-		DDA3937_RS15860	0.68	+1.2
3,627,329	-		DDA3937_RS15860	0.68	-0.1
3,627,329	-		DDA3937_RS15860	0.68	+0.8
3,627,329	-		DDA3937_RS15860	0.68	-3.8
3,627,374	+		DDA3937_RS15860	0.71	-0.5
3,627,375	-		DDA3937_RS15860	0.71	-0.0
3,627,375	-		DDA3937_RS15860	0.71	+2.3
3,627,375	-		DDA3937_RS15860	0.71	-1.1
3,627,396	+		DDA3937_RS15860	0.72	-0.5
3,627,397	-		DDA3937_RS15860	0.72	-0.7
3,627,397	-		DDA3937_RS15860	0.72	-0.1
3,627,590	+		DDA3937_RS15860	0.86	-0.5
3,627,616	+		DDA3937_RS15860	0.87	-3.3
3,627,634	+		DDA3937_RS15860	0.89	-2.3
3,627,634	+		DDA3937_RS15860	0.89	-3.0
3,627,635	-		DDA3937_RS15860	0.89	+0.4
3,627,635	-				+2.7
3,627,805	+				-0.5
3,627,805	+				-0.1
3,627,806	-				-1.3
3,627,806	-				-0.8
3,627,806	-				-0.8
3,627,806	-				-2.0
3,627,806	-				+0.3
3,627,875	-				-2.6
3,627,875	-				-2.5
3,627,923	-				-0.6
3,627,923	-				-2.2
3,627,945	-				+1.0
3,628,001	+				-2.4
3,628,001	+				-1.3
3,628,001	+				+0.6
3,628,001	+				-2.6
3,628,001	+				-2.1
3,628,001	+				-0.5
3,628,001	+				-3.4
3,628,002	-				-0.8
3,628,002	-				-0.5
3,628,002	-				-2.3
3,628,008	-				-0.8
3,628,008	-				-0.5
3,628,010	-				-0.1
3,628,010	-				+0.2
3,628,010	-				-0.5
3,628,010	-				+0.3
3,628,021	-				-1.5
3,628,021	-				+1.2
3,628,032	-				+2.0
3,628,032	-				-3.0
3,628,058	+				+0.2
3,628,058	+				+1.0
3,628,058	+				-1.1
3,628,058	+				-3.0
3,628,059	-				-0.2
3,628,059	-				-0.3
3,628,059	-				-0.7
3,628,059	-				+1.5
3,628,059	-				+0.1
3,628,059	-				+2.3
3,628,061	+				-0.0
3,628,061	+				+1.3
3,628,061	+				-1.5
3,628,061	+				-0.4
3,628,062	-				-0.6
3,628,154	+		DDA3937_RS15865	0.12	-2.7
3,628,155	-		DDA3937_RS15865	0.12	+1.5
3,628,155	-		DDA3937_RS15865	0.12	-2.2
3,628,155	-		DDA3937_RS15865	0.12	+0.2
3,628,221	-		DDA3937_RS15865	0.17	+1.1
3,628,244	+		DDA3937_RS15865	0.18	-0.7
3,628,244	+		DDA3937_RS15865	0.18	-1.3
3,628,245	-		DDA3937_RS15865	0.18	+2.1
3,628,245	-		DDA3937_RS15865	0.18	-1.8
3,628,245	-		DDA3937_RS15865	0.18	+1.0
3,628,245	-		DDA3937_RS15865	0.18	-2.0
3,628,267	+		DDA3937_RS15865	0.20	-2.8
3,628,312	-		DDA3937_RS15865	0.23	-1.1
3,628,312	-		DDA3937_RS15865	0.23	-0.8
3,628,348	+		DDA3937_RS15865	0.25	+0.2
3,628,348	+		DDA3937_RS15865	0.25	-0.8
3,628,349	-		DDA3937_RS15865	0.25	+0.8
3,628,401	+		DDA3937_RS15865	0.29	-3.2
3,628,402	-		DDA3937_RS15865	0.29	-1.6
3,628,402	-		DDA3937_RS15865	0.29	-1.7
3,628,402	-		DDA3937_RS15865	0.29	+0.9
3,628,410	-		DDA3937_RS15865	0.29	+1.4
3,628,410	-		DDA3937_RS15865	0.29	-1.6
3,628,431	+		DDA3937_RS15865	0.31	-0.7
3,628,449	-		DDA3937_RS15865	0.32	-0.8
3,628,521	+		DDA3937_RS15865	0.36	-0.0
3,628,521	+		DDA3937_RS15865	0.36	-1.2
3,628,521	+		DDA3937_RS15865	0.36	+2.3
3,628,521	+		DDA3937_RS15865	0.36	+0.6
3,628,521	+		DDA3937_RS15865	0.36	-0.7
3,628,521	+		DDA3937_RS15865	0.36	-3.1
3,628,521	+		DDA3937_RS15865	0.36	-1.7
3,628,522	-		DDA3937_RS15865	0.37	+4.1
3,628,522	-		DDA3937_RS15865	0.37	-1.1
3,628,522	-		DDA3937_RS15865	0.37	+1.1
3,628,522	-		DDA3937_RS15865	0.37	+1.9
3,628,522	-				-0.1
3,628,522	-		DDA3937_RS15865	0.37	-2.1
3,628,522	-		DDA3937_RS15865	0.37	-1.3
3,628,538	+		DDA3937_RS15865	0.38	-0.8
3,628,538	+		DDA3937_RS15865	0.38	-2.2
3,628,539	-		DDA3937_RS15865	0.38	+0.2
3,628,539	-		DDA3937_RS15865	0.38	-0.1
3,628,539	-		DDA3937_RS15865	0.38	-1.2
3,628,610	+		DDA3937_RS15865	0.42	-2.3
3,628,610	+		DDA3937_RS15865	0.42	-0.1
3,628,611	-		DDA3937_RS15865	0.42	+1.1
3,628,622	+		DDA3937_RS15865	0.43	-1.0
3,628,622	+		DDA3937_RS15865	0.43	+1.7
3,628,623	-		DDA3937_RS15865	0.43	+1.9
3,628,671	-		DDA3937_RS15865	0.46	-1.5
3,628,671	-		DDA3937_RS15865	0.46	-1.1
3,628,677	+		DDA3937_RS15865	0.47	-0.1
3,628,677	+		DDA3937_RS15865	0.47	-2.2
3,628,677	+		DDA3937_RS15865	0.47	-1.1
3,628,677	+		DDA3937_RS15865	0.47	-2.3
3,628,677	+		DDA3937_RS15865	0.47	-2.1
3,628,677	+		DDA3937_RS15865	0.47	+1.7
3,628,677	+		DDA3937_RS15865	0.47	-1.1
3,628,678	-		DDA3937_RS15865	0.47	-2.3
3,628,678	-		DDA3937_RS15865	0.47	-2.2
3,628,678	-		DDA3937_RS15865	0.47	+0.3
3,628,678	-		DDA3937_RS15865	0.47	-0.5
3,628,700	+		DDA3937_RS15865	0.48	+1.6
3,628,700	+		DDA3937_RS15865	0.48	-2.3
3,628,700	+		DDA3937_RS15865	0.48	-1.3
3,628,700	+		DDA3937_RS15865	0.48	+1.3
3,628,700	+		DDA3937_RS15865	0.48	-1.0
3,628,700	+		DDA3937_RS15865	0.48	-0.9
3,628,700	+		DDA3937_RS15865	0.48	-0.0
3,628,701	-		DDA3937_RS15865	0.48	+0.8
3,628,701	-		DDA3937_RS15865	0.48	+0.3
3,628,701	-		DDA3937_RS15865	0.48	-1.0
3,628,701	-		DDA3937_RS15865	0.48	-2.2
3,628,701	-		DDA3937_RS15865	0.48	+0.7
3,628,701	-		DDA3937_RS15865	0.48	+0.4
3,628,701	-		DDA3937_RS15865	0.48	-2.2
3,628,701	-		DDA3937_RS15865	0.48	+0.1
3,628,701	-		DDA3937_RS15865	0.48	+2.3
3,628,701	-		DDA3937_RS15865	0.48	+0.2
3,628,701	-		DDA3937_RS15865	0.48	-0.1
3,628,778	+		DDA3937_RS15865	0.53	-0.1
3,628,779	-		DDA3937_RS15865	0.53	-0.4