Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15485

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,548,805	+		DDA3937_RS15480	0.32	-0.3
3,548,841	+		DDA3937_RS15480	0.35	-2.2
3,548,842	-		DDA3937_RS15480	0.35	+1.5
3,548,971	+		DDA3937_RS15480	0.46	+1.1
3,549,141	-		DDA3937_RS15480	0.61	-0.5
3,549,197	-		DDA3937_RS15480	0.66	+0.2
3,549,273	+		DDA3937_RS15480	0.73	-0.4
3,549,273	+		DDA3937_RS15480	0.73	-0.9
3,549,273	+		DDA3937_RS15480	0.73	-2.3
3,549,273	+		DDA3937_RS15480	0.73	-3.2
3,549,273	+		DDA3937_RS15480	0.73	-1.2
3,549,274	-		DDA3937_RS15480	0.73	-0.5
3,549,274	-				-0.8
3,549,274	-				+0.5
3,549,284	+		DDA3937_RS15480	0.74	-1.9
3,549,284	+		DDA3937_RS15480	0.74	-3.4
3,549,285	-		DDA3937_RS15480	0.74	-1.5
3,549,347	+		DDA3937_RS15480	0.79	+1.1
3,549,347	+		DDA3937_RS15480	0.79	+2.1
3,549,347	+		DDA3937_RS15480	0.79	+0.3
3,549,348	-		DDA3937_RS15480	0.79	+1.5
3,549,348	-		DDA3937_RS15480	0.79	-1.3
3,549,350	+		DDA3937_RS15480	0.79	-1.4
3,549,350	+		DDA3937_RS15480	0.79	-0.5
3,549,350	+		DDA3937_RS15480	0.79	+1.3
3,549,351	-		DDA3937_RS15480	0.79	-0.3
3,549,403	+		DDA3937_RS15480	0.84	-0.1
3,549,403	+		DDA3937_RS15480	0.84	-3.5
3,549,404	-		DDA3937_RS15480	0.84	+0.2
3,549,404	-		DDA3937_RS15480	0.84	-1.8
3,549,404	-		DDA3937_RS15480	0.84	-1.6
3,549,406	+		DDA3937_RS15480	0.84	-1.8
3,549,406	+		DDA3937_RS15480	0.84	-0.3
3,549,406	+		DDA3937_RS15480	0.84	-2.1
3,549,406	+		DDA3937_RS15480	0.84	+0.3
3,549,407	-		DDA3937_RS15480	0.84	-2.6
3,549,407	-		DDA3937_RS15480	0.84	-1.1
3,549,424	+		DDA3937_RS15480	0.86	-0.8
3,549,424	+		DDA3937_RS15480	0.86	-1.3
3,549,424	+		DDA3937_RS15480	0.86	-2.2
3,549,442	-		DDA3937_RS15480	0.87	-2.8
3,549,442	-		DDA3937_RS15480	0.87	-0.8
3,549,447	+		DDA3937_RS15480	0.88	-1.1
3,549,447	+		DDA3937_RS15480	0.88	-0.1
3,549,447	+		DDA3937_RS15480	0.88	-0.8
3,549,447	+		DDA3937_RS15480	0.88	-1.1
3,549,447	+		DDA3937_RS15480	0.88	-1.3
3,549,447	+		DDA3937_RS15480	0.88	-1.1
3,549,447	+		DDA3937_RS15480	0.88	-0.8
3,549,447	+		DDA3937_RS15480	0.88	-2.9
3,549,447	+		DDA3937_RS15480	0.88	+0.3
3,549,447	+		DDA3937_RS15480	0.88	-0.6
3,549,448	-		DDA3937_RS15480	0.88	-2.1
3,549,448	-		DDA3937_RS15480	0.88	-2.2
3,549,448	-		DDA3937_RS15480	0.88	-2.3
3,549,448	-		DDA3937_RS15480	0.88	-1.7
3,549,448	-		DDA3937_RS15480	0.88	-0.8
3,549,448	-		DDA3937_RS15480	0.88	-0.8
3,549,448	-		DDA3937_RS15480	0.88	-3.0
3,549,448	-		DDA3937_RS15480	0.88	-0.1
3,549,586	+				-1.5
3,549,602	+				+1.5
3,549,602	+				+1.0
3,549,603	-				-3.2
3,549,603	-				-0.3
3,549,620	-				-0.6
3,549,620	-				+2.1
3,549,620	-				-1.2
3,549,620	-				-0.4
3,549,651	-				+0.5
3,549,675	+				-0.1
3,549,675	+				+0.1
3,549,676	-				-1.0
3,549,734	+				-1.6
3,549,794	-				+0.4
3,549,800	+				-0.5
3,549,832	+				+0.3
3,549,833	-				+2.7
3,549,904	+		DDA3937_RS15485	0.26	-2.1
3,549,921	-		DDA3937_RS15485	0.30	+1.0
3,549,996	+		DDA3937_RS15485	0.47	-0.6
3,549,996	+		DDA3937_RS15485	0.47	-2.3
3,549,997	-		DDA3937_RS15485	0.47	+0.8
3,549,997	-		DDA3937_RS15485	0.47	+1.0
3,550,098	-		DDA3937_RS15485	0.71	-1.7
3,550,153	+		DDA3937_RS15485	0.84	-1.1
3,550,154	-		DDA3937_RS15485	0.84	+2.0
3,550,196	+				+0.7
3,550,196	+				-0.5
3,550,199	+				+1.7
3,550,199	+				-0.6
3,550,199	+				+0.4
3,550,199	+				-0.5
3,550,199	+				+0.8
3,550,200	-				-1.0
3,550,200	-				-0.5
3,550,200	-				+2.2
3,550,208	+				+0.9
3,550,208	+				+0.4
3,550,209	-				+0.5
3,550,215	+				+2.4
3,550,215	+				-0.4
3,550,223	+				+0.3
3,550,223	+				-0.2
3,550,224	-				+0.8
3,550,224	-				+1.1
3,550,224	-				+1.9
3,550,245	+				-1.8
3,550,252	+				+0.9
3,550,266	-				+1.3
3,550,270	+				-0.2
3,550,274	+				-1.1
3,550,275	-				-1.9
3,550,321	+				-0.2
3,550,321	+				+1.2
3,550,321	+				-2.3
3,550,321	+				+0.7
3,550,321	+				-2.6
3,550,321	+				-1.1
3,550,321	+				-1.5
3,550,321	+				+1.9
3,550,321	+				+0.1
3,550,321	+				+0.4
3,550,322	-				+1.0
3,550,322	-				+0.8
3,550,322	-				+0.6
3,550,325	+				+0.2
3,550,325	+				+1.8
3,550,325	+				+0.6
3,550,325	+				-2.2
3,550,325	+				+0.4
3,550,325	+				-0.1
3,550,325	+				+1.2
3,550,325	+				-0.9
3,550,325	+				-0.6
3,550,325	+				+1.2
3,550,325	+				+1.3
3,550,326	-				+1.5
3,550,326	-				-2.6
3,550,326	-				-0.4
3,550,329	+				-0.2
3,550,329	+				-2.4
3,550,329	+				+2.1
3,550,329	+				+1.5
3,550,329	+				+2.2
3,550,330	-				-0.7
3,550,330	-				-0.8
3,550,330	-				-1.6
3,550,451	+				-1.1
3,550,462	+				+1.5
3,550,462	+				-1.9
3,550,462	+				+1.5
3,550,462	+				-0.3
3,550,462	+				-0.9
3,550,466	+				+2.8
3,550,466	+				+2.4
3,550,467	-				+1.1
3,550,467	-				+2.6
3,550,467	-				+1.8
3,550,472	+				+1.1
3,550,472	+				-3.2
3,550,472	+				-0.3
3,550,473	-				-1.2
3,550,473	-				-0.1
3,550,473	-				-1.6
3,550,474	+				-1.3
3,550,474	+				-1.2
3,550,474	+				-3.2
3,550,477	+				+0.1
3,550,506	+				-0.3
3,550,506	+				-2.9
3,550,506	+				+1.4
3,550,507	-				-3.0
3,550,507	-				-2.7
3,550,507	-				-0.8
3,550,507	-				-0.5
3,550,507	-				-2.6
3,550,507	-				-2.7
3,550,507	-				-1.3
3,550,540	+				+0.4
3,550,572	-				-1.5
3,550,581	+				-0.5
3,550,581	+				-2.5
3,550,581	+				-1.7
3,550,581	+				+1.2
3,550,581	+				-0.8
3,550,581	+				+2.2
3,550,581	+				-0.6
3,550,581	+				+1.1
3,550,581	+				-0.4
3,550,581	+				+1.4
3,550,581	+				+0.7
3,550,582	-				+0.0
3,550,582	-				-0.8
3,550,582	-				-1.5
3,550,582	-				+0.5
3,550,582	-				+0.8
3,550,582	-				+1.7
3,550,582	-				-1.3
3,550,582	-				+1.5
3,550,582	-				+0.6
3,550,582	-				+1.2
3,550,582	-				-0.5
3,550,582	-				-0.9
3,550,582	-				+1.3
3,550,583	+				-0.5
3,550,583	+				-3.9
3,550,583	+				-2.0
3,550,583	+				-0.8
3,550,583	+				-1.1
3,550,583	+				+0.6
3,550,583	+				-0.3
3,550,583	+				-1.0
3,550,583	+				-3.1
3,550,583	+				-1.9
3,550,583	+				+0.1
3,550,583	+				-1.3
3,550,583	+				+2.2
3,550,583	+				-1.2
3,550,584	-				+0.2
3,550,584	-				+1.7
3,550,584	-				-2.1
3,550,584	-				-0.9
3,550,584	-				-2.4
3,550,584	-				-1.5
3,550,584	-				+1.5
3,550,584	-				-0.6
3,550,584	-				-0.8
3,550,584	-				-0.9
3,550,585	+				+1.1
3,550,585	+				+0.8
3,550,585	+				+1.1
3,550,585	+				+0.2
3,550,585	+				+0.9
3,550,585	+				-2.2
3,550,585	+				+1.6
3,550,585	+				-0.5
3,550,586	-				+0.5
3,550,586	-				-3.6
3,550,586	-				+0.5
3,550,586	-				-0.8
3,550,586	-				-2.6
3,550,586	-				-0.8
3,550,658	+				-2.5
3,550,658	+				+0.7
3,550,659	-				-0.5
3,550,706	+				-2.6
3,550,706	+				-1.9
3,550,706	+				-2.1
3,550,706	+				-1.8
3,550,706	+				+0.5
3,550,706	+				-0.8
3,550,707	-				+0.2
3,550,707	-				-0.1
3,550,736	+				+2.5
3,550,817	+		DDA3937_RS15495	0.13	+1.7
3,550,817	+		DDA3937_RS15495	0.13	+0.7
3,550,817	+		DDA3937_RS15495	0.13	-1.3
3,550,817	+		DDA3937_RS15495	0.13	-0.8
3,550,817	+		DDA3937_RS15495	0.13	-0.1
3,550,868	-		DDA3937_RS15495	0.19	-1.2
3,551,008	+		DDA3937_RS15495	0.35	-2.5
3,551,009	-		DDA3937_RS15495	0.35	-0.2