Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15430

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,537,721	+		DDA3937_RS15425	0.37	+2.3
3,537,721	+		DDA3937_RS15425	0.37	-1.1
3,537,726	+		DDA3937_RS15425	0.37	-0.5
3,537,726	+		DDA3937_RS15425	0.37	-2.4
3,537,784	+		DDA3937_RS15425	0.41	-1.1
3,537,784	+		DDA3937_RS15425	0.41	-0.1
3,537,785	-		DDA3937_RS15425	0.41	+0.2
3,537,884	+		DDA3937_RS15425	0.49	+0.6
3,537,884	+		DDA3937_RS15425	0.49	+1.5
3,538,071	+		DDA3937_RS15425	0.62	-0.1
3,538,071	+		DDA3937_RS15425	0.62	+2.9
3,538,071	+		DDA3937_RS15425	0.62	-1.5
3,538,072	-		DDA3937_RS15425	0.62	+0.9
3,538,072	-		DDA3937_RS15425	0.62	-0.5
3,538,072	-		DDA3937_RS15425	0.62	+0.2
3,538,072	-		DDA3937_RS15425	0.62	-2.8
3,538,075	-		DDA3937_RS15425	0.62	-1.9
3,538,075	-		DDA3937_RS15425	0.62	+1.2
3,538,075	-		DDA3937_RS15425	0.62	+0.1
3,538,303	+		DDA3937_RS15425	0.79	+1.9
3,538,303	+		DDA3937_RS15425	0.79	-0.1
3,538,303	+		DDA3937_RS15425	0.79	-0.5
3,538,303	+		DDA3937_RS15425	0.79	-2.1
3,538,303	+		DDA3937_RS15425	0.79	+0.2
3,538,303	+		DDA3937_RS15425	0.79	+0.8
3,538,303	+		DDA3937_RS15425	0.79	-1.1
3,538,303	+		DDA3937_RS15425	0.79	-0.1
3,538,303	+		DDA3937_RS15425	0.79	-1.5
3,538,304	-		DDA3937_RS15425	0.79	+2.5
3,538,304	-		DDA3937_RS15425	0.79	-1.3
3,538,304	-		DDA3937_RS15425	0.79	+0.9
3,538,304	-		DDA3937_RS15425	0.79	-0.5
3,538,304	-		DDA3937_RS15425	0.79	+1.0
3,538,349	+		DDA3937_RS15425	0.82	+2.3
3,538,350	-		DDA3937_RS15425	0.82	-0.8
3,538,495	+				+1.9
3,538,546	+				-1.0
3,538,559	+				-2.8
3,538,559	+				-1.7
3,538,603	+				-1.8
3,538,604	-				-0.4
3,538,608	+				-2.1
3,538,608	+				+0.0
3,538,608	+				+0.3
3,538,610	+				+0.7
3,538,610	+				+0.3
3,538,610	+				+0.2
3,538,610	+				-0.1
3,538,610	+				-1.6
3,538,611	-				-1.8
3,538,611	-				-1.1
3,538,611	-				-2.7
3,538,611	-				+1.3
3,538,611	-				+1.2
3,538,611	-				-3.5
3,538,614	+				+0.0
3,538,614	+				+3.0
3,538,615	-				-1.1
3,538,624	+				-1.2
3,538,624	+				-2.2
3,538,624	+				-2.3
3,538,624	+				-1.3
3,538,625	-				-3.1
3,538,634	-				-1.4
3,538,634	-				-2.1
3,538,634	-				+1.4
3,538,647	+				-0.4
3,538,647	+				-3.1
3,538,647	+				-1.7
3,538,648	-				-2.9
3,538,648	-				-0.6
3,538,648	-				-0.0
3,538,648	-				+2.3
3,538,650	+				+0.8
3,538,651	-				-1.1
3,538,651	-				-0.2
3,538,651	-				-1.7
3,538,651	-				-2.2
3,538,676	+				+0.8
3,538,676	+				-1.7
3,538,689	+				-0.9
3,538,690	-				-1.1
3,538,690	-				-2.2
3,538,690	-				+0.3
3,538,690	-				-3.4
3,538,690	-				-0.2
3,538,720	+				-1.2
3,538,721	-				-2.1
3,538,721	-				-1.8
3,538,722	+				+1.2
3,538,722	+				+1.3
3,538,722	+				-0.1
3,538,722	+				+0.0
3,538,722	+				+0.9
3,538,722	+				-1.1
3,538,722	+				-0.1
3,538,723	-				+0.8
3,538,723	-				+0.4
3,538,737	+				-2.3
3,538,859	+		DDA3937_RS15430	0.16	-0.7
3,538,873	+		DDA3937_RS15430	0.17	-2.4
3,538,963	+				-0.8
3,538,964	-		DDA3937_RS15430	0.26	-2.2
3,538,969	+		DDA3937_RS15430	0.27	-1.1
3,538,969	+		DDA3937_RS15430	0.27	+1.5
3,538,969	+		DDA3937_RS15430	0.27	+1.2
3,538,969	+		DDA3937_RS15430	0.27	+0.1
3,538,970	-		DDA3937_RS15430	0.27	-1.6
3,538,970	-		DDA3937_RS15430	0.27	-0.8
3,538,970	-		DDA3937_RS15430	0.27	-0.1
3,538,980	+		DDA3937_RS15430	0.28	-0.5
3,538,980	+		DDA3937_RS15430	0.28	-0.7
3,538,980	+		DDA3937_RS15430	0.28	-0.2
3,538,980	+		DDA3937_RS15430	0.28	-0.5
3,538,980	+		DDA3937_RS15430	0.28	-3.4
3,538,981	-		DDA3937_RS15430	0.28	-3.4
3,538,981	-		DDA3937_RS15430	0.28	-1.4
3,538,984	+		DDA3937_RS15430	0.28	-0.5
3,538,984	+		DDA3937_RS15430	0.28	-0.5
3,538,984	+		DDA3937_RS15430	0.28	-2.6
3,538,985	-		DDA3937_RS15430	0.28	-1.3
3,538,985	-		DDA3937_RS15430	0.28	-2.5
3,539,028	+		DDA3937_RS15430	0.32	+2.3
3,539,203	-				+0.2
3,539,203	-		DDA3937_RS15430	0.49	-0.5
3,539,212	+		DDA3937_RS15430	0.50	+0.9
3,539,212	+				+3.0
3,539,213	-		DDA3937_RS15430	0.50	-2.3
3,539,278	+		DDA3937_RS15430	0.56	-2.4
3,539,279	-		DDA3937_RS15430	0.56	-1.3
3,539,279	-		DDA3937_RS15430	0.56	-1.5
3,539,282	-		DDA3937_RS15430	0.56	-2.3
3,539,389	+		DDA3937_RS15430	0.67	-0.7
3,539,471	+		DDA3937_RS15430	0.74	-2.3
3,539,506	+		DDA3937_RS15430	0.78	+1.5
3,539,507	-		DDA3937_RS15430	0.78	-0.8
3,539,556	+		DDA3937_RS15430	0.82	-2.2
3,539,556	+		DDA3937_RS15430	0.82	-1.4
3,539,663	+				-0.5
3,539,676	-				-2.3
3,539,719	-				+0.2
3,539,737	+				+0.8
3,539,884	+				+1.5
3,539,884	+		DDA3937_RS15435	0.44	-2.3
3,539,885	-		DDA3937_RS15435	0.45	-1.8
3,539,885	-		DDA3937_RS15435	0.45	-1.5
3,539,885	-		DDA3937_RS15435	0.45	-1.7
3,539,952	-		DDA3937_RS15435	0.63	-2.2
3,539,956	+		DDA3937_RS15435	0.64	-1.9
3,539,956	+		DDA3937_RS15435	0.64	-1.7
3,539,956	+		DDA3937_RS15435	0.64	-1.7
3,539,957	-		DDA3937_RS15435	0.64	+0.4
3,539,958	+		DDA3937_RS15435	0.64	-0.3
3,539,958	+		DDA3937_RS15435	0.64	-1.1
3,539,958	+		DDA3937_RS15435	0.64	+1.2
3,539,958	+		DDA3937_RS15435	0.64	-1.7
3,539,958	+		DDA3937_RS15435	0.64	-1.4
3,539,958	+		DDA3937_RS15435	0.64	+2.2
3,539,958	+				+1.5
3,539,958	+		DDA3937_RS15435	0.64	+0.2
3,539,958	+		DDA3937_RS15435	0.64	-1.3
3,539,959	-		DDA3937_RS15435	0.65	-2.4
3,539,959	-		DDA3937_RS15435	0.65	-1.5
3,539,959	-		DDA3937_RS15435	0.65	-0.1
3,539,959	-		DDA3937_RS15435	0.65	-1.8
3,539,959	-		DDA3937_RS15435	0.65	-1.1
3,539,959	-		DDA3937_RS15435	0.65	+0.7
3,539,959	-		DDA3937_RS15435	0.65	-1.3
3,539,959	-		DDA3937_RS15435	0.65	+1.8
3,539,959	-		DDA3937_RS15435	0.65	-1.0
3,539,959	-		DDA3937_RS15435	0.65	-1.3
3,539,959	-		DDA3937_RS15435	0.65	-0.8
3,539,959	-		DDA3937_RS15435	0.65	-1.1
3,539,959	-		DDA3937_RS15435	0.65	-0.3
3,539,959	-		DDA3937_RS15435	0.65	+1.2
3,539,959	-		DDA3937_RS15435	0.65	-3.0
3,539,959	-		DDA3937_RS15435	0.65	-1.8
3,539,959	-		DDA3937_RS15435	0.65	-2.5
3,539,959	-		DDA3937_RS15435	0.65	-2.9
3,539,959	-		DDA3937_RS15435	0.65	-1.5
3,539,959	-		DDA3937_RS15435	0.65	-1.7
3,539,959	-		DDA3937_RS15435	0.65	+0.8
3,539,959	-		DDA3937_RS15435	0.65	-0.5
3,539,962	+		DDA3937_RS15435	0.66	-1.3
3,539,962	+				-0.1
3,539,962	+		DDA3937_RS15435	0.66	-0.8
3,539,962	+		DDA3937_RS15435	0.66	-1.7
3,539,962	+		DDA3937_RS15435	0.66	-0.1
3,539,962	+		DDA3937_RS15435	0.66	-0.4
3,539,962	+		DDA3937_RS15435	0.66	-0.3
3,539,962	+				+1.5
3,539,962	+		DDA3937_RS15435	0.66	-2.9
3,539,962	+		DDA3937_RS15435	0.66	+0.7
3,539,963	-		DDA3937_RS15435	0.66	-0.8
3,539,963	-		DDA3937_RS15435	0.66	-1.8
3,539,963	-		DDA3937_RS15435	0.66	-1.1
3,539,963	-				+0.5
3,539,963	-		DDA3937_RS15435	0.66	-1.1
3,540,006	+		DDA3937_RS15435	0.78	-0.5
3,540,007	-		DDA3937_RS15435	0.78	-1.3
3,540,093	+				+0.5
3,540,094	-				-1.6
3,540,159	+		DDA3937_RS15440	0.24	-0.9
3,540,159	+		DDA3937_RS15440	0.24	-2.3
3,540,159	+		DDA3937_RS15440	0.24	-1.5
3,540,159	+		DDA3937_RS15440	0.24	+0.5
3,540,159	+		DDA3937_RS15440	0.24	-1.5
3,540,160	-		DDA3937_RS15440	0.24	-0.8
3,540,160	-		DDA3937_RS15440	0.24	-0.5
3,540,259	-		DDA3937_RS15440	0.60	-0.2
3,540,269	-		DDA3937_RS15440	0.63	-0.1
3,540,276	+		DDA3937_RS15440	0.66	-1.9
3,540,276	+		DDA3937_RS15440	0.66	-0.7
3,540,276	+		DDA3937_RS15440	0.66	-2.5
3,540,276	+		DDA3937_RS15440	0.66	-0.8
3,540,277	-		DDA3937_RS15440	0.66	+0.1
3,540,294	+		DDA3937_RS15440	0.72	-1.5
3,540,294	+		DDA3937_RS15440	0.72	-1.9
3,540,294	+		DDA3937_RS15440	0.72	-0.4
3,540,294	+		DDA3937_RS15440	0.72	-1.7
3,540,295	-		DDA3937_RS15440	0.73	-1.9
3,540,295	-		DDA3937_RS15440	0.73	-0.2
3,540,295	-		DDA3937_RS15440	0.73	-3.7
3,540,295	-		DDA3937_RS15440	0.73	-2.5
3,540,295	-		DDA3937_RS15440	0.73	-0.1
3,540,295	-		DDA3937_RS15440	0.73	+1.2
3,540,312	+		DDA3937_RS15440	0.79	-1.3
3,540,313	-		DDA3937_RS15440	0.79	-0.3
3,540,313	-		DDA3937_RS15440	0.79	-0.5
3,540,360	+				-1.1
3,540,361	-				-1.3
3,540,361	-				-0.7
3,540,361	-				-1.7
3,540,426	-				+0.1
3,540,427	+				+1.6
3,540,427	+				-0.5
3,540,427	+				-3.1
3,540,427	+				+1.1
3,540,427	+				-0.3
3,540,428	-				-1.9
3,540,428	-				-1.3
3,540,428	-				-1.5
3,540,428	-				-1.5
3,540,428	-				+1.3
3,540,428	-				+0.1
3,540,428	-				-1.8
3,540,428	-				-0.1
3,540,428	-				-0.8
3,540,428	-				+0.2
3,540,428	-				+1.9
3,540,456	+				-1.5
3,540,456	+				-0.8
3,540,457	-				-0.1
3,540,457	-				-1.3
3,540,457	-				-0.8
3,540,457	-				-2.3