Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14765

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,389,377	-		DDA3937_RS14760	0.28	-1.6
3,389,377	-		DDA3937_RS14760	0.28	-0.3
3,389,377	-		DDA3937_RS14760	0.28	+0.2
3,389,377	-		DDA3937_RS14760	0.28	-0.4
3,389,403	+		DDA3937_RS14760	0.30	-0.1
3,389,404	-		DDA3937_RS14760	0.30	+2.5
3,389,418	+		DDA3937_RS14760	0.32	-0.5
3,389,557	+		DDA3937_RS14760	0.43	-1.2
3,389,557	+		DDA3937_RS14760	0.43	-2.3
3,389,557	+		DDA3937_RS14760	0.43	+1.8
3,389,558	-		DDA3937_RS14760	0.43	+0.1
3,389,558	-		DDA3937_RS14760	0.43	-3.4
3,389,558	-		DDA3937_RS14760	0.43	-2.1
3,389,558	-		DDA3937_RS14760	0.43	-0.4
3,389,558	-		DDA3937_RS14760	0.43	-1.5
3,389,558	-		DDA3937_RS14760	0.43	-1.0
3,389,558	-		DDA3937_RS14760	0.43	+0.7
3,389,558	-		DDA3937_RS14760	0.43	-0.4
3,389,558	-		DDA3937_RS14760	0.43	+0.3
3,389,561	+		DDA3937_RS14760	0.43	-1.7
3,389,562	-		DDA3937_RS14760	0.43	+0.4
3,389,647	+		DDA3937_RS14760	0.51	+0.9
3,389,648	-		DDA3937_RS14760	0.51	-1.3
3,389,648	-		DDA3937_RS14760	0.51	-0.8
3,389,648	-		DDA3937_RS14760	0.51	-2.0
3,389,649	+		DDA3937_RS14760	0.51	+0.5
3,389,649	+		DDA3937_RS14760	0.51	+0.6
3,389,649	+		DDA3937_RS14760	0.51	+0.7
3,389,649	+		DDA3937_RS14760	0.51	-0.6
3,389,649	+		DDA3937_RS14760	0.51	+1.7
3,389,649	+		DDA3937_RS14760	0.51	-0.5
3,389,650	-		DDA3937_RS14760	0.51	-1.4
3,389,650	-		DDA3937_RS14760	0.51	+2.6
3,389,650	-		DDA3937_RS14760	0.51	-0.8
3,389,650	-		DDA3937_RS14760	0.51	+0.3
3,389,697	+		DDA3937_RS14760	0.55	+0.1
3,389,697	+		DDA3937_RS14760	0.55	+0.6
3,389,698	-		DDA3937_RS14760	0.55	+2.8
3,389,698	-		DDA3937_RS14760	0.55	-0.1
3,389,732	-		DDA3937_RS14760	0.58	+1.8
3,389,735	+		DDA3937_RS14760	0.58	-1.8
3,389,744	+		DDA3937_RS14760	0.59	+1.3
3,389,745	-		DDA3937_RS14760	0.59	-1.1
3,389,804	+		DDA3937_RS14760	0.64	+1.5
3,389,804	+		DDA3937_RS14760	0.64	-2.7
3,389,804	+		DDA3937_RS14760	0.64	-2.3
3,389,805	-		DDA3937_RS14760	0.64	-0.5
3,389,805	-		DDA3937_RS14760	0.64	-1.1
3,389,883	-		DDA3937_RS14760	0.70	+0.9
3,390,255	+				-1.5
3,390,255	+				-2.6
3,390,255	+				-2.3
3,390,255	+				+0.9
3,390,255	+				-1.3
3,390,255	+				-3.2
3,390,255	+				-2.1
3,390,255	+				-1.6
3,390,255	+				-1.2
3,390,255	+				-1.1
3,390,255	+				-2.3
3,390,256	-				+0.2
3,390,256	-				+2.9
3,390,256	-				+1.1
3,390,256	-				-2.7
3,390,256	-				+0.2
3,390,256	-				-0.8
3,390,256	-				-1.5
3,390,256	-				-1.3
3,390,256	-				-0.7
3,390,256	-				-1.3
3,390,266	+				-2.1
3,390,277	+				-2.4
3,390,277	+				-2.0
3,390,277	+				-0.8
3,390,277	+				+1.2
3,390,277	+				-1.1
3,390,277	+				-0.4
3,390,277	+				-1.4
3,390,278	-				-1.7
3,390,278	-				-2.3
3,390,278	-				-2.4
3,390,320	+				-2.7
3,390,321	-				-0.5
3,390,343	+		DDA3937_RS14765	0.10	-0.1
3,390,343	+		DDA3937_RS14765	0.10	+1.7
3,390,435	+		DDA3937_RS14765	0.19	-2.8
3,390,444	+		DDA3937_RS14765	0.20	-1.1
3,390,444	+		DDA3937_RS14765	0.20	+0.4
3,390,444	+				-0.5
3,390,445	-		DDA3937_RS14765	0.20	+0.8
3,390,445	-		DDA3937_RS14765	0.20	-1.1
3,390,602	+		DDA3937_RS14765	0.35	+2.1
3,390,602	+		DDA3937_RS14765	0.35	-1.5
3,390,603	-		DDA3937_RS14765	0.35	-2.0
3,390,603	-		DDA3937_RS14765	0.35	+1.3
3,390,603	-		DDA3937_RS14765	0.35	+0.2
3,390,603	-		DDA3937_RS14765	0.35	+1.0
3,390,603	-		DDA3937_RS14765	0.35	-0.8
3,390,603	-		DDA3937_RS14765	0.35	-1.7
3,390,701	+		DDA3937_RS14765	0.44	-1.6
3,390,701	+		DDA3937_RS14765	0.44	-2.6
3,390,701	+		DDA3937_RS14765	0.44	-0.8
3,390,701	+		DDA3937_RS14765	0.44	+1.2
3,390,701	+		DDA3937_RS14765	0.44	+2.2
3,390,701	+		DDA3937_RS14765	0.44	-1.1
3,390,701	+		DDA3937_RS14765	0.44	-1.5
3,390,701	+		DDA3937_RS14765	0.44	-1.7
3,390,701	+		DDA3937_RS14765	0.44	-1.5
3,390,701	+		DDA3937_RS14765	0.44	-3.0
3,390,702	-		DDA3937_RS14765	0.44	-0.8
3,390,702	-		DDA3937_RS14765	0.44	-1.1
3,390,702	-		DDA3937_RS14765	0.44	+0.9
3,390,702	-		DDA3937_RS14765	0.44	-0.4
3,390,702	-		DDA3937_RS14765	0.44	-2.8
3,390,702	-		DDA3937_RS14765	0.44	-3.4
3,390,702	-		DDA3937_RS14765	0.44	+0.5
3,390,702	-		DDA3937_RS14765	0.44	+1.0
3,390,702	-		DDA3937_RS14765	0.44	-1.1
3,390,702	-		DDA3937_RS14765	0.44	-0.3
3,390,702	-		DDA3937_RS14765	0.44	-0.1
3,390,702	-		DDA3937_RS14765	0.44	-0.8
3,390,702	-		DDA3937_RS14765	0.44	-1.5
3,390,702	-		DDA3937_RS14765	0.44	-0.3
3,390,702	-		DDA3937_RS14765	0.44	-0.3
3,390,738	+				+0.5
3,390,827	-		DDA3937_RS14765	0.56	-0.1
3,390,897	+		DDA3937_RS14765	0.63	-1.8
3,390,898	-		DDA3937_RS14765	0.63	-1.1
3,390,900	+				-0.1
3,390,901	-		DDA3937_RS14765	0.63	+1.9
3,390,901	-		DDA3937_RS14765	0.63	+0.8
3,390,924	+		DDA3937_RS14765	0.65	-1.2
3,390,925	-		DDA3937_RS14765	0.65	+1.5
3,390,930	+		DDA3937_RS14765	0.66	-2.5
3,390,930	+		DDA3937_RS14765	0.66	+0.1
3,390,931	-		DDA3937_RS14765	0.66	-2.3
3,390,998	-		DDA3937_RS14765	0.72	-0.5
3,391,105	+		DDA3937_RS14765	0.83	-0.1
3,391,105	+		DDA3937_RS14765	0.83	+1.0
3,391,140	-		DDA3937_RS14765	0.86	-0.5
3,391,207	-				-1.3
3,391,209	+				-1.2
3,391,209	+				+0.5
3,391,210	-				-0.1
3,391,346	+				-2.5
3,391,477	+		DDA3937_RS14770	0.26	-0.6
3,391,477	+		DDA3937_RS14770	0.26	-1.8
3,391,477	+		DDA3937_RS14770	0.26	-1.3
3,391,478	-		DDA3937_RS14770	0.26	-2.2
3,391,478	-		DDA3937_RS14770	0.26	+0.3
3,391,490	+		DDA3937_RS14770	0.28	-1.8
3,391,572	+		DDA3937_RS14770	0.39	-0.5
3,391,572	+		DDA3937_RS14770	0.39	-0.4
3,391,573	-		DDA3937_RS14770	0.39	-0.5
3,391,573	-		DDA3937_RS14770	0.39	+1.3
3,391,593	+		DDA3937_RS14770	0.42	+0.5
3,391,605	+		DDA3937_RS14770	0.43	-1.3
3,391,605	+		DDA3937_RS14770	0.43	-2.4
3,391,605	+		DDA3937_RS14770	0.43	+1.0
3,391,605	+		DDA3937_RS14770	0.43	-0.0
3,391,605	+		DDA3937_RS14770	0.43	-0.8
3,391,605	+		DDA3937_RS14770	0.43	-0.1
3,391,645	+		DDA3937_RS14770	0.49	-0.3
3,391,712	+		DDA3937_RS14770	0.58	+0.5
3,391,746	-		DDA3937_RS14770	0.62	+1.1
3,391,773	+		DDA3937_RS14770	0.66	+0.2
3,391,773	+		DDA3937_RS14770	0.66	-1.1
3,391,773	+		DDA3937_RS14770	0.66	+0.5
3,391,774	-		DDA3937_RS14770	0.66	-2.1
3,391,780	+		DDA3937_RS14770	0.67	-0.1
3,391,792	+		DDA3937_RS14770	0.69	-0.7
3,391,872	+		DDA3937_RS14770	0.79	+0.8
3,391,872	+		DDA3937_RS14770	0.79	-1.9
3,391,872	+		DDA3937_RS14770	0.79	-1.8
3,391,872	+		DDA3937_RS14770	0.79	+0.4
3,391,873	-		DDA3937_RS14770	0.79	-0.8
3,391,873	-		DDA3937_RS14770	0.79	-2.1
3,391,895	+		DDA3937_RS14770	0.82	-1.5
3,392,000	+				-1.1
3,392,001	-				-1.8
3,392,001	-				+0.2
3,392,001	-				-0.1
3,392,052	+				+1.2
3,392,053	-				+0.2
3,392,111	+		DDA3937_RS14775	0.24	+1.1
3,392,112	-				-1.1
3,392,153	-		DDA3937_RS14775	0.35	-0.6