Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13670

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,111,187	-		DDA3937_RS13665	0.75	-0.8
3,111,187	-		DDA3937_RS13665	0.75	-1.2
3,111,199	+		DDA3937_RS13665	0.76	+1.1
3,111,200	-		DDA3937_RS13665	0.76	+1.5
3,111,374	-		DDA3937_RS13665	0.82	+0.0
3,111,405	+		DDA3937_RS13665	0.84	-1.8
3,111,405	+		DDA3937_RS13665	0.84	-1.2
3,111,406	-		DDA3937_RS13665	0.84	-0.0
3,111,420	+		DDA3937_RS13665	0.84	-1.3
3,111,421	-		DDA3937_RS13665	0.84	+3.0
3,111,464	+		DDA3937_RS13665	0.86	-0.5
3,111,464	+		DDA3937_RS13665	0.86	-1.9
3,111,465	-		DDA3937_RS13665	0.86	+1.4
3,111,501	+		DDA3937_RS13665	0.87	-0.4
3,111,501	+		DDA3937_RS13665	0.87	+1.0
3,111,501	+		DDA3937_RS13665	0.87	-2.7
3,111,501	+		DDA3937_RS13665	0.87	-1.9
3,111,501	+		DDA3937_RS13665	0.87	-1.8
3,111,501	+		DDA3937_RS13665	0.87	+0.1
3,111,502	-		DDA3937_RS13665	0.87	+2.0
3,111,502	-		DDA3937_RS13665	0.87	-2.7
3,111,502	-		DDA3937_RS13665	0.87	+0.7
3,111,502	-		DDA3937_RS13665	0.87	+1.5
3,111,506	-		DDA3937_RS13665	0.87	-1.5
3,111,525	+		DDA3937_RS13665	0.88	-0.0
3,111,526	-		DDA3937_RS13665	0.88	+0.4
3,111,526	-		DDA3937_RS13665	0.88	-2.3
3,111,561	+		DDA3937_RS13665	0.89	+2.0
3,111,700	+				-0.8
3,111,700	+				-0.8
3,111,701	-				+0.0
3,111,710	+				-3.0
3,111,711	-				+1.6
3,111,741	+				-1.8
3,111,836	+				+0.2
3,111,840	+				-1.4
3,111,841	-				+2.2
3,111,841	-				-0.8
3,111,867	+				-1.6
3,111,874	+				+1.3
3,111,874	+				-1.3
3,111,874	+				+0.6
3,111,875	-				+1.6
3,111,875	-				+0.8
3,111,875	-				+1.0
3,111,875	-				+1.6
3,111,875	-				+1.5
3,111,879	-				+0.2
3,111,924	+				-0.8
3,111,926	+				+3.3
3,111,926	+				-3.4
3,111,926	+				-1.8
3,111,926	+				-1.3
3,111,926	+				+0.5
3,111,926	+				+0.1
3,111,926	+				+1.1
3,111,927	-				+1.3
3,111,927	-				+0.5
3,111,927	-				-0.1
3,111,927	-				+0.5
3,111,927	-				+2.3
3,111,934	+				+1.8
3,111,934	+				-0.3
3,111,944	+				-1.7
3,111,945	-				+0.2
3,111,945	-				-2.5
3,111,949	+				+2.3
3,111,949	+				+1.5
3,111,949	+				-0.8
3,111,950	-				+0.2
3,111,950	-				+0.7
3,111,950	-				-3.1
3,111,950	-				-1.8
3,111,969	+				-0.0
3,111,969	+				+1.9
3,111,969	+				+0.3
3,111,969	+				-0.5
3,111,969	+				-1.0
3,111,969	+				+1.2
3,111,970	-				-2.5
3,111,970	-				+1.7
3,111,970	-				-0.4
3,111,970	-				+0.4
3,111,970	-				+1.7
3,111,970	-				+2.2
3,111,970	-				-1.9
3,112,018	+				+0.3
3,112,019	-				-1.5
3,112,019	-				+0.5
3,112,019	-				-1.9
3,112,067	-				-0.6
3,112,082	-				+1.7
3,112,082	-				+0.7
3,112,082	-				-0.6
3,112,082	-				+0.4
3,112,109	+				+1.8
3,112,109	+				-2.1
3,112,110	-				-1.9
3,112,117	+				-0.0
3,112,118	-				+0.9
3,112,118	-				-1.0
3,112,118	-				+1.0
3,112,118	-				-1.9
3,112,118	-				-0.0
3,112,118	-				+2.4
3,112,143	+				+1.0
3,112,143	+				+0.2
3,112,143	+				-1.7
3,112,143	+				+0.3
3,112,143	+				-1.6
3,112,143	+				-0.8
3,112,143	+				+0.3
3,112,144	-				-1.0
3,112,144	-				-3.6
3,112,144	-				+0.1
3,112,144	-				+0.2
3,112,144	-				-2.3
3,112,144	-				+0.1
3,112,144	-				+1.5
3,112,145	+				-0.9
3,112,145	+				-2.0
3,112,145	+				-1.8
3,112,145	+				-0.7
3,112,145	+				+1.2
3,112,145	+				+1.0
3,112,145	+				+1.6
3,112,145	+				-1.1
3,112,146	-				-2.0
3,112,146	-				-4.6
3,112,146	-				-0.3
3,112,146	-				+0.8
3,112,146	-				+0.4
3,112,146	-				+0.1
3,112,146	-				-2.9
3,112,212	+				-1.9
3,112,212	+				-0.2
3,112,215	+				-2.7
3,112,215	+				-1.0
3,112,215	+				-1.0
3,112,215	+				-0.7
3,112,216	-				+1.5
3,112,216	-				+0.5
3,112,234	+				-2.4
3,112,234	+				-0.9
3,112,234	+				-1.5
3,112,234	+				-2.5
3,112,235	-				-1.6
3,112,235	-				+1.5
3,112,249	+				+0.5
3,112,250	-				+2.5
3,112,252	+				-1.8
3,112,252	+				-2.5
3,112,253	-				-1.9
3,112,260	+				-1.9
3,112,260	+				-0.0
3,112,260	+				-2.5
3,112,261	-				-0.5
3,112,261	-				+1.6
3,112,261	-				-2.3
3,112,261	-				-0.6
3,112,291	+				+1.1
3,112,367	+		DDA3937_RS13670	0.15	+0.4
3,112,367	+		DDA3937_RS13670	0.15	+0.4
3,112,512	+		DDA3937_RS13670	0.25	-1.3
3,112,513	-		DDA3937_RS13670	0.25	-0.1
3,112,524	+		DDA3937_RS13670	0.26	-0.5
3,112,545	+		DDA3937_RS13670	0.27	+0.9
3,112,570	+		DDA3937_RS13670	0.29	-0.6
3,112,588	+		DDA3937_RS13670	0.30	-4.2
3,112,588	+		DDA3937_RS13670	0.30	+0.8
3,112,589	-		DDA3937_RS13670	0.30	-0.4
3,112,589	-		DDA3937_RS13670	0.30	-1.3
3,112,589	-		DDA3937_RS13670	0.30	-0.5
3,112,635	+		DDA3937_RS13670	0.33	-0.5
3,112,635	+		DDA3937_RS13670	0.33	-1.0
3,112,636	-		DDA3937_RS13670	0.34	-0.8
3,112,682	+		DDA3937_RS13670	0.37	+1.3
3,112,683	-		DDA3937_RS13670	0.37	-1.5
3,112,753	+		DDA3937_RS13670	0.42	-1.6
3,112,753	+		DDA3937_RS13670	0.42	+1.5
3,112,754	-		DDA3937_RS13670	0.42	-3.4
3,112,754	-		DDA3937_RS13670	0.42	-1.0
3,112,754	-		DDA3937_RS13670	0.42	-2.5
3,112,868	+		DDA3937_RS13670	0.49	-1.3
3,112,869	-		DDA3937_RS13670	0.50	+2.1
3,112,869	-		DDA3937_RS13670	0.50	-0.5
3,112,949	+		DDA3937_RS13670	0.55	+3.0
3,112,950	-		DDA3937_RS13670	0.55	+0.3
3,112,973	+		DDA3937_RS13670	0.57	+0.5
3,113,028	+		DDA3937_RS13670	0.60	-1.3
3,113,029	-		DDA3937_RS13670	0.61	+2.2
3,113,029	-		DDA3937_RS13670	0.61	-3.0
3,113,053	-		DDA3937_RS13670	0.62	-1.4
3,113,072	-		DDA3937_RS13670	0.64	-2.8
3,113,072	-		DDA3937_RS13670	0.64	-1.3
3,113,072	-		DDA3937_RS13670	0.64	-2.3
3,113,072	-		DDA3937_RS13670	0.64	-0.8
3,113,118	+		DDA3937_RS13670	0.67	+0.1
3,113,119	-		DDA3937_RS13670	0.67	-2.6
3,113,133	+		DDA3937_RS13670	0.68	-1.6
3,113,152	+		DDA3937_RS13670	0.69	-1.6
3,113,152	+		DDA3937_RS13670	0.69	+1.3
3,113,152	+		DDA3937_RS13670	0.69	+0.8
3,113,152	+		DDA3937_RS13670	0.69	+2.5
3,113,153	-		DDA3937_RS13670	0.69	-0.5
3,113,153	-		DDA3937_RS13670	0.69	+1.3
3,113,154	+		DDA3937_RS13670	0.69	-1.4
3,113,154	+		DDA3937_RS13670	0.69	-1.6
3,113,154	+		DDA3937_RS13670	0.69	-2.9
3,113,154	+		DDA3937_RS13670	0.69	-1.3
3,113,154	+		DDA3937_RS13670	0.69	-1.3
3,113,155	-		DDA3937_RS13670	0.69	-1.5
3,113,155	-		DDA3937_RS13670	0.69	-0.8
3,113,155	-		DDA3937_RS13670	0.69	-1.5
3,113,155	-		DDA3937_RS13670	0.69	-0.5
3,113,155	-		DDA3937_RS13670	0.69	-1.0
3,113,155	-		DDA3937_RS13670	0.69	-2.5
3,113,155	-		DDA3937_RS13670	0.69	-2.0
3,113,155	-		DDA3937_RS13670	0.69	-3.1
3,113,155	-		DDA3937_RS13670	0.69	-1.5
3,113,194	+		DDA3937_RS13670	0.72	+3.8
3,113,229	+				-0.0
3,113,229	+		DDA3937_RS13670	0.74	+0.7
3,113,229	+		DDA3937_RS13670	0.74	+1.7
3,113,289	+		DDA3937_RS13670	0.78	-2.5
3,113,320	+		DDA3937_RS13670	0.81	-0.8
3,113,530	+				+0.5
3,113,531	-				-1.7
3,113,598	+				+1.5
3,113,598	+				-0.4
3,113,789	+		DDA3937_RS13675	0.25	-0.0
3,113,789	+		DDA3937_RS13675	0.25	-1.5
3,113,790	-		DDA3937_RS13675	0.25	+0.0
3,113,880	+		DDA3937_RS13675	0.37	+0.9
3,113,880	+		DDA3937_RS13675	0.37	+0.6
3,113,882	+		DDA3937_RS13675	0.37	-0.3
3,113,883	-		DDA3937_RS13675	0.38	-1.6
3,113,883	-		DDA3937_RS13675	0.38	-1.3
3,113,883	-		DDA3937_RS13675	0.38	+0.0
3,114,007	+		DDA3937_RS13675	0.54	-0.7
3,114,007	+		DDA3937_RS13675	0.54	+2.1
3,114,036	+		DDA3937_RS13675	0.58	-3.2
3,114,036	+		DDA3937_RS13675	0.58	-2.8
3,114,037	-		DDA3937_RS13675	0.58	-1.3
3,114,037	-		DDA3937_RS13675	0.58	-3.4
3,114,040	+		DDA3937_RS13675	0.58	-0.8
3,114,040	+		DDA3937_RS13675	0.58	+3.0
3,114,040	+		DDA3937_RS13675	0.58	-2.5
3,114,040	+				+3.0
3,114,041	-				+2.9
3,114,043	+		DDA3937_RS13675	0.59	+0.9
3,114,043	+		DDA3937_RS13675	0.59	-0.5
3,114,043	+		DDA3937_RS13675	0.59	+1.4
3,114,044	-		DDA3937_RS13675	0.59	-2.6
3,114,044	-		DDA3937_RS13675	0.59	+1.4
3,114,044	-		DDA3937_RS13675	0.59	-2.3
3,114,210	-		DDA3937_RS13675	0.81	-3.5
3,114,210	-		DDA3937_RS13675	0.81	-1.3
3,114,254	-		DDA3937_RS13675	0.87	+1.2
3,114,254	-		DDA3937_RS13675	0.87	+1.9
3,114,296	-				+3.0
3,114,296	-				-1.4
3,114,366	+				-2.5
3,114,366	+				-2.6
3,114,367	-				-1.9
3,114,422	+				-1.4
3,114,423	-				+2.4