Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13180

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,004,831	+		DDA3937_RS13170	0.80	-1.3
3,004,841	+		DDA3937_RS13170	0.81	-3.3
3,004,841	+		DDA3937_RS13170	0.81	+0.6
3,004,842	-		DDA3937_RS13170	0.81	-0.7
3,004,842	-		DDA3937_RS13170	0.81	-2.3
3,004,842	-		DDA3937_RS13170	0.81	-1.4
3,004,866	+		DDA3937_RS13170	0.83	-2.0
3,004,907	-		DDA3937_RS13170	0.87	-1.6
3,004,941	-				-1.2
3,005,073	+				+0.1
3,005,073	+				-1.4
3,005,074	-				+1.4
3,005,074	-				-1.6
3,005,089	-				-0.1
3,005,092	+				+1.7
3,005,092	+				-1.6
3,005,092	+				-0.2
3,005,092	+				+1.1
3,005,092	+				-1.2
3,005,092	+				-0.7
3,005,092	+				+0.0
3,005,092	+				+0.3
3,005,092	+				-1.9
3,005,093	-				-1.1
3,005,093	-				-0.0
3,005,093	-				-3.1
3,005,093	-				-1.0
3,005,093	-				+2.3
3,005,093	-				-1.0
3,005,093	-				+1.9
3,005,093	-				-0.4
3,005,093	-				-2.4
3,005,093	-				-1.4
3,005,127	+				+2.0
3,005,133	+				+1.1
3,005,155	-				-0.7
3,005,169	-				-0.4
3,005,178	+		DDA3937_RS13175	0.12	-2.0
3,005,178	+		DDA3937_RS13175	0.12	-1.2
3,005,246	-		DDA3937_RS13175	0.40	-4.4
3,005,292	-		DDA3937_RS13175	0.59	-1.2
3,005,377	-				-1.4
3,005,393	-				-1.7
3,005,415	-				+3.2
3,005,415	-				+1.5
3,005,415	-				-1.3
3,005,415	-				-1.2
3,005,434	+				-0.0
3,005,486	-				-2.9
3,005,503	+				-0.0
3,005,515	+				-1.6
3,005,516	-				-1.6
3,005,516	-				+1.1
3,005,540	-				-2.0
3,005,540	-				-2.1
3,005,576	+				-1.4
3,005,577	-				-1.7
3,005,604	+				-0.1
3,005,604	+				-1.6
3,005,604	+				-2.1
3,005,605	-				-1.6
3,005,605	-				-0.7
3,005,605	-				+0.1
3,005,605	-				-0.7
3,005,606	+				-1.2
3,005,606	+				+0.9
3,005,606	+				-1.6
3,005,607	-				-1.6
3,005,607	-				-3.1
3,005,607	-				+1.6
3,005,612	+				-0.4
3,005,623	+				-2.7
3,005,623	+				-1.6
3,005,624	-				-1.0
3,005,637	+				-0.1
3,005,638	-				-0.2
3,005,664	+				+0.6
3,005,665	-				+0.9
3,005,665	-				-0.7
3,005,669	-				-1.7
3,005,669	-				-0.9
3,005,669	-				-0.4
3,005,683	-				-2.2
3,005,686	+				-1.4
3,005,686	+				-3.4
3,005,687	-				+1.1
3,005,687	-				-1.7
3,005,687	-				-2.2
3,005,756	+		DDA3937_RS13180	0.27	+0.7
3,005,756	+		DDA3937_RS13180	0.27	-0.4
3,005,756	+		DDA3937_RS13180	0.27	-1.8
3,005,757	-		DDA3937_RS13180	0.27	-2.2
3,005,757	-		DDA3937_RS13180	0.27	-1.9
3,005,783	+		DDA3937_RS13180	0.38	-2.1
3,005,791	+		DDA3937_RS13180	0.41	-2.5
3,005,791	+		DDA3937_RS13180	0.41	+0.6
3,005,791	+		DDA3937_RS13180	0.41	+0.5
3,005,792	-		DDA3937_RS13180	0.41	-1.0
3,005,836	-		DDA3937_RS13180	0.58	-1.3
3,005,836	-		DDA3937_RS13180	0.58	+1.2
3,005,866	+		DDA3937_RS13180	0.70	-0.8
3,005,866	+		DDA3937_RS13180	0.70	-1.0
3,005,866	+		DDA3937_RS13180	0.70	-2.7
3,005,867	-		DDA3937_RS13180	0.71	-1.0
3,005,867	-		DDA3937_RS13180	0.71	-2.8
3,005,867	-		DDA3937_RS13180	0.71	+0.6
3,005,867	-		DDA3937_RS13180	0.71	-0.9
3,005,867	-		DDA3937_RS13180	0.71	-2.6
3,005,867	-		DDA3937_RS13180	0.71	-2.9
3,005,867	-		DDA3937_RS13180	0.71	+0.6
3,005,867	-		DDA3937_RS13180	0.71	-1.2
3,005,867	-		DDA3937_RS13180	0.71	-2.2
3,005,978	-				-1.4
3,006,012	+				-2.0
3,006,012	+				-1.7
3,006,020	-				-1.4
3,006,020	-				-0.7
3,006,222	-				+0.2
3,006,240	-				-0.3
3,006,240	-				-3.3
3,006,332	+				-0.9
3,006,336	-				-1.8
3,006,349	-				+0.6
3,006,349	-				-0.0
3,006,365	-				-1.0
3,006,394	+		DDA3937_RS13185	0.13	-0.3
3,006,395	-		DDA3937_RS13185	0.13	-2.0
3,006,395	-		DDA3937_RS13185	0.13	-0.2
3,006,395	-		DDA3937_RS13185	0.13	-1.0
3,006,396	+		DDA3937_RS13185	0.14	-0.0
3,006,396	+		DDA3937_RS13185	0.14	-1.9
3,006,397	-		DDA3937_RS13185	0.14	-0.4
3,006,397	-		DDA3937_RS13185	0.14	-1.6
3,006,397	-		DDA3937_RS13185	0.14	+1.2
3,006,397	-		DDA3937_RS13185	0.14	-1.2
3,006,397	-		DDA3937_RS13185	0.14	-0.5
3,006,397	-		DDA3937_RS13185	0.14	+0.1
3,006,413	-		DDA3937_RS13185	0.17	-1.7
3,006,418	+				-0.0
3,006,441	+		DDA3937_RS13185	0.22	-2.5
3,006,442	-		DDA3937_RS13185	0.22	+2.3
3,006,477	-		DDA3937_RS13185	0.28	-2.3
3,006,477	-				-0.0
3,006,490	+		DDA3937_RS13185	0.30	-1.6
3,006,490	+		DDA3937_RS13185	0.30	-1.6
3,006,490	+		DDA3937_RS13185	0.30	-1.3
3,006,491	-		DDA3937_RS13185	0.31	-0.7
3,006,491	-		DDA3937_RS13185	0.31	-2.9
3,006,491	-		DDA3937_RS13185	0.31	-0.8
3,006,581	+		DDA3937_RS13185	0.47	+0.9
3,006,581	+		DDA3937_RS13185	0.47	-0.0
3,006,582	-		DDA3937_RS13185	0.47	+0.2
3,006,582	-		DDA3937_RS13185	0.47	-2.2
3,006,602	+		DDA3937_RS13185	0.51	-1.4
3,006,602	+		DDA3937_RS13185	0.51	-0.0
3,006,603	-		DDA3937_RS13185	0.51	-0.7
3,006,604	+		DDA3937_RS13185	0.51	-1.4
3,006,604	+		DDA3937_RS13185	0.51	-0.3
3,006,604	+		DDA3937_RS13185	0.51	-1.0
3,006,604	+		DDA3937_RS13185	0.51	-0.8
3,006,605	-		DDA3937_RS13185	0.51	-0.9
3,006,605	-		DDA3937_RS13185	0.51	-2.5
3,006,605	-		DDA3937_RS13185	0.51	-0.4
3,006,605	-		DDA3937_RS13185	0.51	-2.7
3,006,613	-		DDA3937_RS13185	0.53	+0.2
3,006,622	+		DDA3937_RS13185	0.54	-2.7
3,006,639	-		DDA3937_RS13185	0.57	-1.1
3,006,760	-		DDA3937_RS13185	0.79	-1.1
3,006,760	-		DDA3937_RS13185	0.79	-0.9
3,006,812	+		DDA3937_RS13185	0.88	-2.7
3,006,812	+		DDA3937_RS13185	0.88	+0.6
3,006,813	-		DDA3937_RS13185	0.89	-0.2
3,006,844	+				-1.9
3,006,844	+				+1.9
3,006,845	-				+0.6
3,006,873	+				-0.4
3,006,873	+				+0.3
3,006,889	+				-1.9
3,006,899	+				-1.1
3,006,909	+				-0.0
3,006,909	+				-2.0
3,006,910	-				-1.2