Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13170

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,003,036	+				-0.4
3,003,036	+		DDA3937_RS13160	0.87	-0.4
3,003,036	+		DDA3937_RS13160	0.87	+0.3
3,003,037	-		DDA3937_RS13160	0.87	-0.4
3,003,287	-				-0.4
3,003,325	+				+0.4
3,003,326	-				-1.4
3,003,326	-				+0.4
3,003,454	+				+2.6
3,003,454	+				-0.7
3,003,454	+				+1.2
3,003,454	+				-0.2
3,003,454	+				-2.3
3,003,454	+				-2.2
3,003,455	-				-2.8
3,003,455	-				-0.0
3,003,455	-				+1.7
3,003,457	+				+1.3
3,003,457	+				-0.7
3,003,458	-				-0.8
3,003,458	-				-0.0
3,003,458	-				-0.8
3,003,459	+				+1.2
3,003,489	+				+1.3
3,003,490	-				-3.2
3,003,499	-				-1.0
3,003,499	-				-1.0
3,003,702	-		DDA3937_RS13165	0.60	-0.4
3,003,702	-		DDA3937_RS13165	0.60	+0.3
3,003,702	-		DDA3937_RS13165	0.60	-1.9
3,003,702	-		DDA3937_RS13165	0.60	+1.6
3,003,702	-		DDA3937_RS13165	0.60	-1.6
3,003,706	+		DDA3937_RS13165	0.61	-1.1
3,003,706	+		DDA3937_RS13165	0.61	-1.2
3,003,768	+		DDA3937_RS13165	0.83	-1.2
3,003,783	+		DDA3937_RS13165	0.88	-2.2
3,003,783	+		DDA3937_RS13165	0.88	-0.5
3,003,784	-		DDA3937_RS13165	0.89	-2.2
3,003,819	+				+0.5
3,003,819	+				-2.3
3,003,820	-				-1.7
3,003,820	-				-0.7
3,003,820	-				-2.2
3,003,822	+				+2.5
3,003,822	+				-0.4
3,003,822	+				-0.7
3,003,823	-				-1.4
3,003,823	-				+1.4
3,003,833	+				+0.4
3,003,834	-				-2.6
3,003,835	+				-2.4
3,003,835	+				-1.8
3,003,835	+				-1.3
3,003,836	-				+1.8
3,003,836	-				+1.0
3,003,836	-				-2.1
3,003,858	+				-1.9
3,003,859	-				+1.9
3,003,859	-				-0.4
3,003,861	-				+3.2
3,003,916	+				-0.0
3,003,930	-				-0.7
3,003,930	-				-1.1
3,003,935	+				-1.2
3,003,936	-				+0.1
3,003,936	-				+0.8
3,003,948	-				-1.6
3,003,971	+				-2.3
3,003,972	-				-0.4
3,003,972	-				-0.4
3,003,972	-				-0.6
3,004,082	+				-1.3
3,004,082	+				-1.2
3,004,082	+				-0.0
3,004,083	-				-0.4
3,004,083	-				-1.6
3,004,083	-				-2.2
3,004,083	-				-1.7
3,004,083	-				-2.3
3,004,083	-				-1.2
3,004,083	-				-0.0
3,004,085	+				-2.4
3,004,086	-				-2.2
3,004,090	+				-2.2
3,004,091	-				-3.2
3,004,091	-				+1.6
3,004,093	-				-1.4
3,004,093	-				-0.4
3,004,143	+		DDA3937_RS13170	0.14	-1.0
3,004,143	+		DDA3937_RS13170	0.14	-1.7
3,004,143	+		DDA3937_RS13170	0.14	-2.4
3,004,234	+		DDA3937_RS13170	0.23	-1.5
3,004,266	+		DDA3937_RS13170	0.26	-1.4
3,004,267	-		DDA3937_RS13170	0.26	-0.4
3,004,290	-		DDA3937_RS13170	0.28	-1.7
3,004,290	-		DDA3937_RS13170	0.28	-2.1
3,004,363	-		DDA3937_RS13170	0.35	-2.4
3,004,363	-		DDA3937_RS13170	0.35	+0.1
3,004,363	-		DDA3937_RS13170	0.35	-1.0
3,004,366	+		DDA3937_RS13170	0.35	-1.2
3,004,367	-		DDA3937_RS13170	0.35	-1.0
3,004,533	+		DDA3937_RS13170	0.51	-0.4
3,004,534	-		DDA3937_RS13170	0.51	-0.7
3,004,534	-		DDA3937_RS13170	0.51	-2.0
3,004,534	-		DDA3937_RS13170	0.51	-2.0
3,004,555	+		DDA3937_RS13170	0.53	-2.0
3,004,555	+		DDA3937_RS13170	0.53	-0.4
3,004,555	+				-0.7
3,004,556	-		DDA3937_RS13170	0.54	+1.9
3,004,556	-		DDA3937_RS13170	0.54	-2.8
3,004,556	-		DDA3937_RS13170	0.54	-2.1
3,004,556	-		DDA3937_RS13170	0.54	-1.8
3,004,556	-		DDA3937_RS13170	0.54	-2.1
3,004,683	+		DDA3937_RS13170	0.66	-1.7
3,004,831	+		DDA3937_RS13170	0.80	-1.3
3,004,841	+		DDA3937_RS13170	0.81	-3.3
3,004,841	+		DDA3937_RS13170	0.81	+0.6
3,004,842	-		DDA3937_RS13170	0.81	-0.7
3,004,842	-		DDA3937_RS13170	0.81	-2.3
3,004,842	-		DDA3937_RS13170	0.81	-1.4
3,004,866	+		DDA3937_RS13170	0.83	-2.0
3,004,907	-		DDA3937_RS13170	0.87	-1.6
3,004,941	-				-1.2
3,005,073	+				+0.1
3,005,073	+				-1.4
3,005,074	-				+1.4
3,005,074	-				-1.6
3,005,089	-				-0.1
3,005,092	+				+1.7
3,005,092	+				-1.6
3,005,092	+				-0.2
3,005,092	+				+1.1
3,005,092	+				-1.2
3,005,092	+				-0.7
3,005,092	+				+0.0
3,005,092	+				+0.3
3,005,092	+				-1.9
3,005,093	-				-1.1
3,005,093	-				-0.0
3,005,093	-				-3.1
3,005,093	-				-1.0
3,005,093	-				+2.3
3,005,093	-				-1.0
3,005,093	-				+1.9
3,005,093	-				-0.4
3,005,093	-				-2.4
3,005,093	-				-1.4
3,005,127	+				+2.0
3,005,133	+				+1.1
3,005,155	-				-0.7
3,005,169	-				-0.4
3,005,178	+		DDA3937_RS13175	0.12	-2.0
3,005,178	+		DDA3937_RS13175	0.12	-1.2
3,005,246	-		DDA3937_RS13175	0.40	-4.4
3,005,292	-		DDA3937_RS13175	0.59	-1.2
3,005,377	-				-1.4
3,005,393	-				-1.7
3,005,415	-				+3.2
3,005,415	-				+1.5
3,005,415	-				-1.3
3,005,415	-				-1.2
3,005,434	+				-0.0
3,005,486	-				-2.9
3,005,503	+				-0.0
3,005,515	+				-1.6
3,005,516	-				-1.6
3,005,516	-				+1.1
3,005,540	-				-2.0
3,005,540	-				-2.1
3,005,576	+				-1.4
3,005,577	-				-1.7
3,005,604	+				-0.1
3,005,604	+				-1.6
3,005,604	+				-2.1
3,005,605	-				-1.6
3,005,605	-				-0.7
3,005,605	-				+0.1
3,005,605	-				-0.7
3,005,606	+				-1.2
3,005,606	+				+0.9
3,005,606	+				-1.6
3,005,607	-				-1.6
3,005,607	-				-3.1
3,005,607	-				+1.6
3,005,612	+				-0.4
3,005,623	+				-2.7
3,005,623	+				-1.6
3,005,624	-				-1.0
3,005,637	+				-0.1
3,005,638	-				-0.2
3,005,664	+				+0.6
3,005,665	-				+0.9
3,005,665	-				-0.7
3,005,669	-				-1.7
3,005,669	-				-0.9
3,005,669	-				-0.4
3,005,683	-				-2.2
3,005,686	+				-1.4
3,005,686	+				-3.4
3,005,687	-				+1.1
3,005,687	-				-1.7
3,005,687	-				-2.2
3,005,756	+		DDA3937_RS13180	0.27	+0.7
3,005,756	+		DDA3937_RS13180	0.27	-0.4
3,005,756	+		DDA3937_RS13180	0.27	-1.8
3,005,757	-		DDA3937_RS13180	0.27	-2.2
3,005,757	-		DDA3937_RS13180	0.27	-1.9
3,005,783	+		DDA3937_RS13180	0.38	-2.1
3,005,791	+		DDA3937_RS13180	0.41	-2.5
3,005,791	+		DDA3937_RS13180	0.41	+0.6
3,005,791	+		DDA3937_RS13180	0.41	+0.5
3,005,792	-		DDA3937_RS13180	0.41	-1.0
3,005,836	-		DDA3937_RS13180	0.58	-1.3
3,005,836	-		DDA3937_RS13180	0.58	+1.2
3,005,866	+		DDA3937_RS13180	0.70	-0.8
3,005,866	+		DDA3937_RS13180	0.70	-1.0
3,005,866	+		DDA3937_RS13180	0.70	-2.7
3,005,867	-		DDA3937_RS13180	0.71	-1.0
3,005,867	-		DDA3937_RS13180	0.71	-2.8
3,005,867	-		DDA3937_RS13180	0.71	+0.6
3,005,867	-		DDA3937_RS13180	0.71	-0.9
3,005,867	-		DDA3937_RS13180	0.71	-2.6
3,005,867	-		DDA3937_RS13180	0.71	-2.9
3,005,867	-		DDA3937_RS13180	0.71	+0.6
3,005,867	-		DDA3937_RS13180	0.71	-1.2
3,005,867	-		DDA3937_RS13180	0.71	-2.2
3,005,978	-				-1.4
3,006,012	+				-2.0
3,006,012	+				-1.7
3,006,020	-				-1.4
3,006,020	-				-0.7