Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13165

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS13160 and DDA3937_RS13165 are separated by 75 nucleotidesDDA3937_RS13165 and DDA3937_RS13170 are separated by 180 nucleotides DDA3937_RS13160: DDA3937_RS13160 - ribonuclease E, at 3,000,256 to 3,003,453 _RS13160 DDA3937_RS13165: DDA3937_RS13165 - antibiotic biosynthesis monooxygenase, at 3,003,529 to 3,003,816 _RS13165 DDA3937_RS13170: DDA3937_RS13170 - dihydroorotase, at 3,003,997 to 3,005,040 _RS13170 Position (kb) 3003 3004Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3003.036 kb on + strandat 3003.036 kb on + strand, within DDA3937_RS13160at 3003.036 kb on + strand, within DDA3937_RS13160at 3003.037 kb on - strand, within DDA3937_RS13160at 3003.287 kb on - strandat 3003.325 kb on + strandat 3003.326 kb on - strandat 3003.326 kb on - strandat 3003.454 kb on + strandat 3003.454 kb on + strandat 3003.454 kb on + strandat 3003.454 kb on + strandat 3003.454 kb on + strandat 3003.454 kb on + strandat 3003.455 kb on - strandat 3003.455 kb on - strandat 3003.455 kb on - strandat 3003.457 kb on + strandat 3003.457 kb on + strandat 3003.458 kb on - strandat 3003.458 kb on - strandat 3003.458 kb on - strandat 3003.459 kb on + strandat 3003.489 kb on + strandat 3003.490 kb on - strandat 3003.499 kb on - strandat 3003.499 kb on - strandat 3003.702 kb on - strand, within DDA3937_RS13165at 3003.702 kb on - strand, within DDA3937_RS13165at 3003.702 kb on - strand, within DDA3937_RS13165at 3003.702 kb on - strand, within DDA3937_RS13165at 3003.702 kb on - strand, within DDA3937_RS13165at 3003.706 kb on + strand, within DDA3937_RS13165at 3003.706 kb on + strand, within DDA3937_RS13165at 3003.768 kb on + strand, within DDA3937_RS13165at 3003.783 kb on + strand, within DDA3937_RS13165at 3003.783 kb on + strand, within DDA3937_RS13165at 3003.784 kb on - strand, within DDA3937_RS13165at 3003.819 kb on + strandat 3003.819 kb on + strandat 3003.820 kb on - strandat 3003.820 kb on - strandat 3003.820 kb on - strandat 3003.822 kb on + strandat 3003.822 kb on + strandat 3003.822 kb on + strandat 3003.823 kb on - strandat 3003.823 kb on - strandat 3003.833 kb on + strandat 3003.834 kb on - strandat 3003.835 kb on + strandat 3003.835 kb on + strandat 3003.835 kb on + strandat 3003.836 kb on - strandat 3003.836 kb on - strandat 3003.836 kb on - strandat 3003.858 kb on + strandat 3003.859 kb on - strandat 3003.859 kb on - strandat 3003.861 kb on - strandat 3003.916 kb on + strandat 3003.930 kb on - strandat 3003.930 kb on - strandat 3003.935 kb on + strandat 3003.936 kb on - strandat 3003.936 kb on - strandat 3003.948 kb on - strandat 3003.971 kb on + strandat 3003.972 kb on - strandat 3003.972 kb on - strandat 3003.972 kb on - strandat 3004.082 kb on + strandat 3004.082 kb on + strandat 3004.082 kb on + strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.083 kb on - strandat 3004.085 kb on + strandat 3004.086 kb on - strandat 3004.090 kb on + strandat 3004.091 kb on - strandat 3004.091 kb on - strandat 3004.093 kb on - strandat 3004.093 kb on - strandat 3004.143 kb on + strand, within DDA3937_RS13170at 3004.143 kb on + strand, within DDA3937_RS13170at 3004.143 kb on + strand, within DDA3937_RS13170at 3004.234 kb on + strand, within DDA3937_RS13170at 3004.266 kb on + strand, within DDA3937_RS13170at 3004.267 kb on - strand, within DDA3937_RS13170at 3004.290 kb on - strand, within DDA3937_RS13170at 3004.290 kb on - strand, within DDA3937_RS13170at 3004.363 kb on - strand, within DDA3937_RS13170at 3004.363 kb on - strand, within DDA3937_RS13170at 3004.363 kb on - strand, within DDA3937_RS13170at 3004.366 kb on + strand, within DDA3937_RS13170at 3004.367 kb on - strand, within DDA3937_RS13170at 3004.533 kb on + strand, within DDA3937_RS13170at 3004.534 kb on - strand, within DDA3937_RS13170at 3004.534 kb on - strand, within DDA3937_RS13170at 3004.534 kb on - strand, within DDA3937_RS13170at 3004.555 kb on + strand, within DDA3937_RS13170at 3004.555 kb on + strand, within DDA3937_RS13170at 3004.555 kb on + strandat 3004.556 kb on - strand, within DDA3937_RS13170at 3004.556 kb on - strand, within DDA3937_RS13170at 3004.556 kb on - strand, within DDA3937_RS13170at 3004.556 kb on - strand, within DDA3937_RS13170at 3004.556 kb on - strand, within DDA3937_RS13170at 3004.683 kb on + strand, within DDA3937_RS13170

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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3,003,036 + -0.4
3,003,036 + DDA3937_RS13160 0.87 -0.4
3,003,036 + DDA3937_RS13160 0.87 +0.3
3,003,037 - DDA3937_RS13160 0.87 -0.4
3,003,287 - -0.4
3,003,325 + +0.4
3,003,326 - -1.4
3,003,326 - +0.4
3,003,454 + +2.6
3,003,454 + -0.7
3,003,454 + +1.2
3,003,454 + -0.2
3,003,454 + -2.3
3,003,454 + -2.2
3,003,455 - -2.8
3,003,455 - -0.0
3,003,455 - +1.7
3,003,457 + +1.3
3,003,457 + -0.7
3,003,458 - -0.8
3,003,458 - -0.0
3,003,458 - -0.8
3,003,459 + +1.2
3,003,489 + +1.3
3,003,490 - -3.2
3,003,499 - -1.0
3,003,499 - -1.0
3,003,702 - DDA3937_RS13165 0.60 -0.4
3,003,702 - DDA3937_RS13165 0.60 +0.3
3,003,702 - DDA3937_RS13165 0.60 -1.9
3,003,702 - DDA3937_RS13165 0.60 +1.6
3,003,702 - DDA3937_RS13165 0.60 -1.6
3,003,706 + DDA3937_RS13165 0.61 -1.1
3,003,706 + DDA3937_RS13165 0.61 -1.2
3,003,768 + DDA3937_RS13165 0.83 -1.2
3,003,783 + DDA3937_RS13165 0.88 -2.2
3,003,783 + DDA3937_RS13165 0.88 -0.5
3,003,784 - DDA3937_RS13165 0.89 -2.2
3,003,819 + +0.5
3,003,819 + -2.3
3,003,820 - -1.7
3,003,820 - -0.7
3,003,820 - -2.2
3,003,822 + +2.5
3,003,822 + -0.4
3,003,822 + -0.7
3,003,823 - -1.4
3,003,823 - +1.4
3,003,833 + +0.4
3,003,834 - -2.6
3,003,835 + -2.4
3,003,835 + -1.8
3,003,835 + -1.3
3,003,836 - +1.8
3,003,836 - +1.0
3,003,836 - -2.1
3,003,858 + -1.9
3,003,859 - +1.9
3,003,859 - -0.4
3,003,861 - +3.2
3,003,916 + -0.0
3,003,930 - -0.7
3,003,930 - -1.1
3,003,935 + -1.2
3,003,936 - +0.1
3,003,936 - +0.8
3,003,948 - -1.6
3,003,971 + -2.3
3,003,972 - -0.4
3,003,972 - -0.4
3,003,972 - -0.6
3,004,082 + -1.3
3,004,082 + -1.2
3,004,082 + -0.0
3,004,083 - -0.4
3,004,083 - -1.6
3,004,083 - -2.2
3,004,083 - -1.7
3,004,083 - -2.3
3,004,083 - -1.2
3,004,083 - -0.0
3,004,085 + -2.4
3,004,086 - -2.2
3,004,090 + -2.2
3,004,091 - -3.2
3,004,091 - +1.6
3,004,093 - -1.4
3,004,093 - -0.4
3,004,143 + DDA3937_RS13170 0.14 -1.0
3,004,143 + DDA3937_RS13170 0.14 -1.7
3,004,143 + DDA3937_RS13170 0.14 -2.4
3,004,234 + DDA3937_RS13170 0.23 -1.5
3,004,266 + DDA3937_RS13170 0.26 -1.4
3,004,267 - DDA3937_RS13170 0.26 -0.4
3,004,290 - DDA3937_RS13170 0.28 -1.7
3,004,290 - DDA3937_RS13170 0.28 -2.1
3,004,363 - DDA3937_RS13170 0.35 -2.4
3,004,363 - DDA3937_RS13170 0.35 +0.1
3,004,363 - DDA3937_RS13170 0.35 -1.0
3,004,366 + DDA3937_RS13170 0.35 -1.2
3,004,367 - DDA3937_RS13170 0.35 -1.0
3,004,533 + DDA3937_RS13170 0.51 -0.4
3,004,534 - DDA3937_RS13170 0.51 -0.7
3,004,534 - DDA3937_RS13170 0.51 -2.0
3,004,534 - DDA3937_RS13170 0.51 -2.0
3,004,555 + DDA3937_RS13170 0.53 -2.0
3,004,555 + DDA3937_RS13170 0.53 -0.4
3,004,555 + -0.7
3,004,556 - DDA3937_RS13170 0.54 +1.9
3,004,556 - DDA3937_RS13170 0.54 -2.8
3,004,556 - DDA3937_RS13170 0.54 -2.1
3,004,556 - DDA3937_RS13170 0.54 -1.8
3,004,556 - DDA3937_RS13170 0.54 -2.1
3,004,683 + DDA3937_RS13170 0.66 -1.7

Or see this region's nucleotide sequence