Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13160 and DDA3937_RS13165 are separated by 75 nucleotides DDA3937_RS13165 and DDA3937_RS13170 are separated by 180 nucleotides
DDA3937_RS13160: DDA3937_RS13160 - ribonuclease E, at 3,000,256 to 3,003,453
_RS13160
DDA3937_RS13165: DDA3937_RS13165 - antibiotic biosynthesis monooxygenase, at 3,003,529 to 3,003,816
_RS13165
DDA3937_RS13170: DDA3937_RS13170 - dihydroorotase, at 3,003,997 to 3,005,040
_RS13170
Position (kb)
3003
3004 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3003.036 kb on + strand at 3003.036 kb on + strand, within DDA3937_RS13160 at 3003.036 kb on + strand, within DDA3937_RS13160 at 3003.037 kb on - strand, within DDA3937_RS13160 at 3003.287 kb on - strand at 3003.325 kb on + strand at 3003.326 kb on - strand at 3003.326 kb on - strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.454 kb on + strand at 3003.455 kb on - strand at 3003.455 kb on - strand at 3003.455 kb on - strand at 3003.457 kb on + strand at 3003.457 kb on + strand at 3003.458 kb on - strand at 3003.458 kb on - strand at 3003.458 kb on - strand at 3003.459 kb on + strand at 3003.489 kb on + strand at 3003.490 kb on - strand at 3003.499 kb on - strand at 3003.499 kb on - strand at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.702 kb on - strand, within DDA3937_RS13165 at 3003.706 kb on + strand, within DDA3937_RS13165 at 3003.706 kb on + strand, within DDA3937_RS13165 at 3003.768 kb on + strand, within DDA3937_RS13165 at 3003.783 kb on + strand, within DDA3937_RS13165 at 3003.783 kb on + strand, within DDA3937_RS13165 at 3003.784 kb on - strand, within DDA3937_RS13165 at 3003.819 kb on + strand at 3003.819 kb on + strand at 3003.820 kb on - strand at 3003.820 kb on - strand at 3003.820 kb on - strand at 3003.822 kb on + strand at 3003.822 kb on + strand at 3003.822 kb on + strand at 3003.823 kb on - strand at 3003.823 kb on - strand at 3003.833 kb on + strand at 3003.834 kb on - strand at 3003.835 kb on + strand at 3003.835 kb on + strand at 3003.835 kb on + strand at 3003.836 kb on - strand at 3003.836 kb on - strand at 3003.836 kb on - strand at 3003.858 kb on + strand at 3003.859 kb on - strand at 3003.859 kb on - strand at 3003.861 kb on - strand at 3003.916 kb on + strand at 3003.930 kb on - strand at 3003.930 kb on - strand at 3003.935 kb on + strand at 3003.936 kb on - strand at 3003.936 kb on - strand at 3003.948 kb on - strand at 3003.971 kb on + strand at 3003.972 kb on - strand at 3003.972 kb on - strand at 3003.972 kb on - strand at 3004.082 kb on + strand at 3004.082 kb on + strand at 3004.082 kb on + strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.083 kb on - strand at 3004.085 kb on + strand at 3004.086 kb on - strand at 3004.090 kb on + strand at 3004.091 kb on - strand at 3004.091 kb on - strand at 3004.093 kb on - strand at 3004.093 kb on - strand at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.143 kb on + strand, within DDA3937_RS13170 at 3004.234 kb on + strand, within DDA3937_RS13170 at 3004.266 kb on + strand, within DDA3937_RS13170 at 3004.267 kb on - strand, within DDA3937_RS13170 at 3004.290 kb on - strand, within DDA3937_RS13170 at 3004.290 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.363 kb on - strand, within DDA3937_RS13170 at 3004.366 kb on + strand, within DDA3937_RS13170 at 3004.367 kb on - strand, within DDA3937_RS13170 at 3004.533 kb on + strand, within DDA3937_RS13170 at 3004.534 kb on - strand, within DDA3937_RS13170 at 3004.534 kb on - strand, within DDA3937_RS13170 at 3004.534 kb on - strand, within DDA3937_RS13170 at 3004.555 kb on + strand, within DDA3937_RS13170 at 3004.555 kb on + strand, within DDA3937_RS13170 at 3004.555 kb on + strand at 3004.556 kb on - strand, within DDA3937_RS13170 at 3004.556 kb on - strand, within DDA3937_RS13170 at 3004.556 kb on - strand, within DDA3937_RS13170 at 3004.556 kb on - strand, within DDA3937_RS13170 at 3004.556 kb on - strand, within DDA3937_RS13170 at 3004.683 kb on + strand, within DDA3937_RS13170
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 3,003,036 + -0.4 3,003,036 + DDA3937_RS13160 0.87 -0.4 3,003,036 + DDA3937_RS13160 0.87 +0.3 3,003,037 - DDA3937_RS13160 0.87 -0.4 3,003,287 - -0.4 3,003,325 + +0.4 3,003,326 - -1.4 3,003,326 - +0.4 3,003,454 + +2.6 3,003,454 + -0.7 3,003,454 + +1.2 3,003,454 + -0.2 3,003,454 + -2.3 3,003,454 + -2.2 3,003,455 - -2.8 3,003,455 - -0.0 3,003,455 - +1.7 3,003,457 + +1.3 3,003,457 + -0.7 3,003,458 - -0.8 3,003,458 - -0.0 3,003,458 - -0.8 3,003,459 + +1.2 3,003,489 + +1.3 3,003,490 - -3.2 3,003,499 - -1.0 3,003,499 - -1.0 3,003,702 - DDA3937_RS13165 0.60 -0.4 3,003,702 - DDA3937_RS13165 0.60 +0.3 3,003,702 - DDA3937_RS13165 0.60 -1.9 3,003,702 - DDA3937_RS13165 0.60 +1.6 3,003,702 - DDA3937_RS13165 0.60 -1.6 3,003,706 + DDA3937_RS13165 0.61 -1.1 3,003,706 + DDA3937_RS13165 0.61 -1.2 3,003,768 + DDA3937_RS13165 0.83 -1.2 3,003,783 + DDA3937_RS13165 0.88 -2.2 3,003,783 + DDA3937_RS13165 0.88 -0.5 3,003,784 - DDA3937_RS13165 0.89 -2.2 3,003,819 + +0.5 3,003,819 + -2.3 3,003,820 - -1.7 3,003,820 - -0.7 3,003,820 - -2.2 3,003,822 + +2.5 3,003,822 + -0.4 3,003,822 + -0.7 3,003,823 - -1.4 3,003,823 - +1.4 3,003,833 + +0.4 3,003,834 - -2.6 3,003,835 + -2.4 3,003,835 + -1.8 3,003,835 + -1.3 3,003,836 - +1.8 3,003,836 - +1.0 3,003,836 - -2.1 3,003,858 + -1.9 3,003,859 - +1.9 3,003,859 - -0.4 3,003,861 - +3.2 3,003,916 + -0.0 3,003,930 - -0.7 3,003,930 - -1.1 3,003,935 + -1.2 3,003,936 - +0.1 3,003,936 - +0.8 3,003,948 - -1.6 3,003,971 + -2.3 3,003,972 - -0.4 3,003,972 - -0.4 3,003,972 - -0.6 3,004,082 + -1.3 3,004,082 + -1.2 3,004,082 + -0.0 3,004,083 - -0.4 3,004,083 - -1.6 3,004,083 - -2.2 3,004,083 - -1.7 3,004,083 - -2.3 3,004,083 - -1.2 3,004,083 - -0.0 3,004,085 + -2.4 3,004,086 - -2.2 3,004,090 + -2.2 3,004,091 - -3.2 3,004,091 - +1.6 3,004,093 - -1.4 3,004,093 - -0.4 3,004,143 + DDA3937_RS13170 0.14 -1.0 3,004,143 + DDA3937_RS13170 0.14 -1.7 3,004,143 + DDA3937_RS13170 0.14 -2.4 3,004,234 + DDA3937_RS13170 0.23 -1.5 3,004,266 + DDA3937_RS13170 0.26 -1.4 3,004,267 - DDA3937_RS13170 0.26 -0.4 3,004,290 - DDA3937_RS13170 0.28 -1.7 3,004,290 - DDA3937_RS13170 0.28 -2.1 3,004,363 - DDA3937_RS13170 0.35 -2.4 3,004,363 - DDA3937_RS13170 0.35 +0.1 3,004,363 - DDA3937_RS13170 0.35 -1.0 3,004,366 + DDA3937_RS13170 0.35 -1.2 3,004,367 - DDA3937_RS13170 0.35 -1.0 3,004,533 + DDA3937_RS13170 0.51 -0.4 3,004,534 - DDA3937_RS13170 0.51 -0.7 3,004,534 - DDA3937_RS13170 0.51 -2.0 3,004,534 - DDA3937_RS13170 0.51 -2.0 3,004,555 + DDA3937_RS13170 0.53 -2.0 3,004,555 + DDA3937_RS13170 0.53 -0.4 3,004,555 + -0.7 3,004,556 - DDA3937_RS13170 0.54 +1.9 3,004,556 - DDA3937_RS13170 0.54 -2.8 3,004,556 - DDA3937_RS13170 0.54 -2.1 3,004,556 - DDA3937_RS13170 0.54 -1.8 3,004,556 - DDA3937_RS13170 0.54 -2.1 3,004,683 + DDA3937_RS13170 0.66 -1.7
Or see this region's nucleotide sequence