Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12940

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,952,640	+		DDA3937_RS12935	0.43	+1.0
2,952,649	-				-0.0
2,952,697	+		DDA3937_RS12935	0.47	-1.4
2,952,697	+		DDA3937_RS12935	0.47	-0.8
2,952,715	+		DDA3937_RS12935	0.48	-1.7
2,952,715	+		DDA3937_RS12935	0.48	-1.6
2,952,715	+		DDA3937_RS12935	0.48	-2.4
2,952,715	+		DDA3937_RS12935	0.48	-2.0
2,952,715	+		DDA3937_RS12935	0.48	-2.2
2,952,715	+		DDA3937_RS12935	0.48	+1.5
2,952,715	+		DDA3937_RS12935	0.48	+2.1
2,952,715	+		DDA3937_RS12935	0.48	-2.3
2,952,715	+		DDA3937_RS12935	0.48	+0.4
2,952,716	-		DDA3937_RS12935	0.48	-0.0
2,952,716	-		DDA3937_RS12935	0.48	+1.4
2,952,716	-		DDA3937_RS12935	0.48	+1.6
2,952,716	-		DDA3937_RS12935	0.48	-0.5
2,952,716	-		DDA3937_RS12935	0.48	+2.0
2,952,716	-		DDA3937_RS12935	0.48	-2.3
2,952,716	-		DDA3937_RS12935	0.48	+1.8
2,952,716	-		DDA3937_RS12935	0.48	+2.4
2,952,716	-		DDA3937_RS12935	0.48	+2.3
2,952,810	+		DDA3937_RS12935	0.55	-0.3
2,952,810	+		DDA3937_RS12935	0.55	-1.0
2,952,811	-		DDA3937_RS12935	0.55	-0.7
2,952,811	-		DDA3937_RS12935	0.55	-0.2
2,952,813	+		DDA3937_RS12935	0.55	-0.7
2,952,813	+		DDA3937_RS12935	0.55	+0.8
2,952,813	+		DDA3937_RS12935	0.55	+1.6
2,952,814	-		DDA3937_RS12935	0.55	-1.2
2,952,814	-		DDA3937_RS12935	0.55	-1.6
2,952,861	+		DDA3937_RS12935	0.58	-0.7
2,952,861	+		DDA3937_RS12935	0.58	-0.0
2,952,861	+		DDA3937_RS12935	0.58	-0.3
2,952,861	+		DDA3937_RS12935	0.58	-0.3
2,952,861	+		DDA3937_RS12935	0.58	+0.4
2,952,861	+		DDA3937_RS12935	0.58	-3.0
2,952,862	-		DDA3937_RS12935	0.58	+0.6
2,952,862	-		DDA3937_RS12935	0.58	+0.4
2,952,862	-		DDA3937_RS12935	0.58	+1.8
2,952,862	-		DDA3937_RS12935	0.58	-0.1
2,952,903	+		DDA3937_RS12935	0.61	-3.1
2,952,903	+		DDA3937_RS12935	0.61	+1.1
2,952,904	-		DDA3937_RS12935	0.61	+0.7
2,952,954	-		DDA3937_RS12935	0.65	+1.0
2,953,116	+		DDA3937_RS12935	0.76	-4.5
2,953,116	+		DDA3937_RS12935	0.76	-0.7
2,953,156	+		DDA3937_RS12935	0.79	-0.7
2,953,156	+		DDA3937_RS12935	0.79	-1.9
2,953,156	+		DDA3937_RS12935	0.79	-3.0
2,953,157	-		DDA3937_RS12935	0.79	+1.3
2,953,157	-		DDA3937_RS12935	0.79	-1.4
2,953,245	+		DDA3937_RS12935	0.85	-0.7
2,953,245	+		DDA3937_RS12935	0.85	-0.1
2,953,245	+		DDA3937_RS12935	0.85	-3.5
2,953,245	+		DDA3937_RS12935	0.85	-1.4
2,953,246	-		DDA3937_RS12935	0.85	-0.2
2,953,246	-		DDA3937_RS12935	0.85	+2.3
2,953,247	+		DDA3937_RS12935	0.85	-1.4
2,953,247	+		DDA3937_RS12935	0.85	+0.5
2,953,248	-		DDA3937_RS12935	0.85	-0.3
2,953,274	+		DDA3937_RS12935	0.87	-0.5
2,953,360	+				+0.5
2,953,365	+				-0.9
2,953,366	-				-1.0
2,953,366	-				+1.9
2,953,367	+				-0.7
2,953,367	+				-0.1
2,953,367	+				+2.4
2,953,367	+				+1.6
2,953,368	-				+0.7
2,953,368	-				+0.3
2,953,368	-				+0.3
2,953,410	+				+2.0
2,953,410	+				-0.0
2,953,442	-				+0.8
2,953,449	-				-1.4
2,953,449	-				-0.0
2,953,465	+				-0.9
2,953,465	+				+0.3
2,953,465	+				-0.4
2,953,465	+				+0.4
2,953,489	+				-2.0
2,953,490	-				-0.2
2,953,490	-				-1.2
2,953,490	-				+1.9
2,953,490	-				+2.0
2,953,509	+				+0.3
2,953,519	+				-0.5
2,953,519	+				-1.6
2,953,519	+				-0.4
2,953,523	+				-2.1
2,953,525	+				+0.4
2,953,525	+				-1.6
2,953,526	-				-0.3
2,953,526	-				-2.4
2,953,554	+				-1.4
2,953,564	-				-0.4
2,953,564	-				-1.8
2,953,568	+				+0.9
2,953,568	+				-0.4
2,953,569	-				+0.0
2,953,590	+				-2.6
2,953,694	-				+1.8
2,953,694	-				-1.7
2,953,705	+		DDA3937_RS12940	0.10	-1.6
2,953,749	+		DDA3937_RS12940	0.16	-0.0
2,953,749	+		DDA3937_RS12940	0.16	+0.3
2,953,749	+		DDA3937_RS12940	0.16	-2.5
2,953,749	+		DDA3937_RS12940	0.16	+0.6
2,953,753	-		DDA3937_RS12940	0.17	+0.2
2,953,753	-		DDA3937_RS12940	0.17	+1.3
2,953,753	-		DDA3937_RS12940	0.17	-0.4
2,953,821	+		DDA3937_RS12940	0.26	+2.3
2,953,822	-		DDA3937_RS12940	0.26	+0.6
2,953,855	-		DDA3937_RS12940	0.31	-0.5
2,953,987	-		DDA3937_RS12940	0.49	-2.1
2,954,002	+		DDA3937_RS12940	0.51	+0.2
2,954,003	-		DDA3937_RS12940	0.51	+3.0
2,954,004	+		DDA3937_RS12940	0.51	-1.0
2,954,004	+		DDA3937_RS12940	0.51	-2.6
2,954,004	+		DDA3937_RS12940	0.51	-1.5
2,954,086	+		DDA3937_RS12940	0.62	-0.3
2,954,100	+		DDA3937_RS12940	0.64	-1.6
2,954,100	+		DDA3937_RS12940	0.64	-0.4
2,954,100	+		DDA3937_RS12940	0.64	-2.2
2,954,101	-		DDA3937_RS12940	0.64	-0.1
2,954,310	-				-0.4
2,954,328	-				-0.4
2,954,339	+				-0.4
2,954,340	-				-1.4
2,954,364	+				-0.4
2,954,371	-				-0.8
2,954,371	-				+0.6
2,954,371	-				-1.4
2,954,371	-				+2.0
2,954,371	-				-2.3
2,954,371	-				-1.2
2,954,372	+				+0.9
2,954,382	-				+1.5
2,954,448	-				+0.1
2,954,469	-				+2.8
2,954,503	+				-0.3
2,954,503	+				-1.1
2,954,504	-				-1.7
2,954,504	-				-0.4
2,954,504	-				-2.7
2,954,507	-				-0.7
2,954,546	+				-1.2
2,954,547	-				-0.7
2,954,550	+				-2.0
2,954,607	+				+1.9
2,954,611	-				-1.9
2,954,615	+				-0.9
2,954,616	-				+2.4
2,954,672	+				-1.2
2,954,696	+				-0.2
2,954,853	-		DDA3937_RS12945	0.16	-0.6
2,954,911	-		DDA3937_RS12945	0.22	-2.2
2,954,942	+		DDA3937_RS12945	0.25	+1.0
2,954,943	-		DDA3937_RS12945	0.25	-0.0
2,954,943	-		DDA3937_RS12945	0.25	-2.1
2,954,949	-		DDA3937_RS12945	0.26	+0.4
2,954,949	-		DDA3937_RS12945	0.26	-2.2
2,955,045	-				-0.0
2,955,070	+		DDA3937_RS12945	0.38	+0.4
2,955,071	-		DDA3937_RS12945	0.38	-1.2
2,955,071	-		DDA3937_RS12945	0.38	-2.2
2,955,071	-		DDA3937_RS12945	0.38	-2.3
2,955,093	-		DDA3937_RS12945	0.40	-0.3
2,955,093	-		DDA3937_RS12945	0.40	-1.1
2,955,093	-		DDA3937_RS12945	0.40	-1.9
2,955,146	+		DDA3937_RS12945	0.45	+0.2
2,955,146	+		DDA3937_RS12945	0.45	-0.2
2,955,173	+		DDA3937_RS12945	0.48	-1.0
2,955,173	+		DDA3937_RS12945	0.48	+1.0
2,955,174	-		DDA3937_RS12945	0.48	-0.3
2,955,174	-		DDA3937_RS12945	0.48	-1.0
2,955,174	-		DDA3937_RS12945	0.48	-1.5