Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12890

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,938,202	-		DDA3937_RS12885	0.87	-0.3
2,938,202	-		DDA3937_RS12885	0.87	+0.5
2,938,202	-		DDA3937_RS12885	0.87	-0.9
2,938,202	-		DDA3937_RS12885	0.87	+0.5
2,938,202	-		DDA3937_RS12885	0.87	-1.5
2,938,202	-		DDA3937_RS12885	0.87	+0.5
2,938,202	-		DDA3937_RS12885	0.87	-0.7
2,938,202	-		DDA3937_RS12885	0.87	-1.2
2,938,348	-				+0.2
2,938,475	+				-2.3
2,938,475	+				-1.4
2,938,476	-				-1.0
2,938,476	-				-0.7
2,938,476	-				+1.0
2,938,476	-				+0.3
2,938,476	-				-1.6
2,938,476	-				-2.3
2,938,476	-				-0.5
2,938,476	-				-0.3
2,938,476	-				+0.4
2,938,476	-				+3.1
2,938,476	-				+1.5
2,938,477	+				-1.3
2,938,478	-				-2.5
2,938,478	-				-2.0
2,938,504	+				-1.4
2,938,504	+				+0.6
2,938,537	+				-1.8
2,938,537	+				-1.0
2,938,537	+				-1.1
2,938,537	+				-1.0
2,938,537	+				-1.4
2,938,537	+				-1.0
2,938,538	-				-2.3
2,938,538	-				+0.6
2,938,538	-				-0.7
2,938,538	-				-1.6
2,938,554	+				-1.8
2,938,554	+				-0.9
2,938,554	+				-0.9
2,938,555	-				+1.1
2,938,555	-				-1.4
2,938,555	-				+1.6
2,938,601	-				-1.9
2,938,603	+				+0.9
2,938,603	+				-2.3
2,938,603	+				-1.6
2,938,603	+				-0.0
2,938,604	-				+0.0
2,938,604	-				-0.6
2,938,604	-				+1.0
2,938,604	-				-2.8
2,938,604	-				-0.3
2,938,604	-				-1.8
2,938,604	-				-1.3
2,938,604	-				-0.2
2,938,630	-				+1.4
2,938,691	+				-0.2
2,938,691	+				-2.2
2,938,691	+				-1.9
2,938,691	+				-0.0
2,938,691	+				+2.0
2,938,691	+				-0.0
2,938,692	-				-1.9
2,938,692	-				+0.4
2,938,692	-				+0.6
2,938,692	-				-1.1
2,938,692	-				+1.2
2,938,695	+				-1.4
2,938,695	+				+0.6
2,938,695	+				-0.0
2,938,695	+				-2.5
2,938,695	+				-3.0
2,938,695	+				-0.4
2,938,696	-				-1.3
2,938,696	-				+0.2
2,938,707	+				-1.0
2,938,708	-				-1.8
2,938,708	-				-0.4
2,938,711	+				-0.3
2,938,712	-				-0.5
2,938,712	-				-2.3
2,938,712	-				+1.4
2,938,722	+				-2.4
2,938,722	+				+0.7
2,938,723	-				+1.4
2,938,723	-				+0.9
2,938,723	-				+1.0
2,938,782	-				-0.8
2,938,782	-				+0.6
2,938,782	-				+1.1
2,938,782	-				+0.2
2,938,782	-				+2.7
2,938,782	-				+1.4
2,938,782	-				+0.1
2,938,796	-				+1.7
2,938,813	+				-2.3
2,938,813	+				-0.9
2,938,821	-				+3.2
2,938,848	+				+0.6
2,938,848	+				-1.4
2,938,848	+				+0.6
2,938,849	-				+1.1
2,938,849	-				+0.2
2,938,849	-				+1.2
2,938,849	-				+0.5
2,938,849	-				+1.1
2,938,855	-				-3.1
2,938,855	-				+1.6
2,938,857	+				-1.3
2,938,858	-				+2.9
2,938,858	-				+0.5
2,939,048	+				-4.1
2,939,048	+				-3.3
2,939,048	+				-0.4
2,939,048	+				+1.2
2,939,048	+				-1.8
2,939,048	+				+0.8
2,939,049	-				-2.0
2,939,049	-				+2.0
2,939,049	-				+0.6
2,939,049	-				+3.0
2,939,049	-				-1.4
2,939,049	-				+3.2
2,939,049	-				+4.4
2,939,049	-				+2.9
2,939,049	-				-2.4
2,939,049	-				+1.5
2,939,049	-				-0.4
2,939,058	+				-1.9
2,939,059	-				+1.8
2,939,059	-				+3.0
2,939,059	-				-0.0
2,939,059	-				-3.3
2,939,059	-				+0.0
2,939,118	+				+1.9
2,939,118	+				+0.0
2,939,119	-				+4.4
2,939,119	-				+1.2
2,939,119	-				+2.1
2,939,119	-				+3.6
2,939,119	-				+0.4
2,939,119	-				+1.6
2,939,125	+				-0.4
2,939,125	+				-1.0
2,939,125	+				-1.0
2,939,126	-				-1.8
2,939,126	-				+3.3
2,939,135	+				-0.9
2,939,158	+				+2.1
2,939,158	+				+0.6
2,939,159	-				+3.3
2,939,159	-				+1.9
2,939,159	-				+3.3
2,939,166	+				+2.3
2,939,166	+				+2.6
2,939,167	-				+0.6
2,939,167	-				+0.2
2,939,167	-				+0.7
2,939,210	+				+1.3
2,939,210	+				-0.8
2,939,211	-				+0.5
2,939,211	-				+3.4
2,939,211	-				+1.8
2,939,212	+				+3.8
2,939,212	+				+2.6
2,939,212	+				-0.4
2,939,213	-				+2.1
2,939,213	-				+1.1
2,939,213	-				+0.5
2,939,213	-				-0.7
2,939,237	+				+2.3
2,939,237	+				+0.6
2,939,237	+				+2.6
2,939,237	+				+1.8
2,939,237	+				+0.3
2,939,237	+				+2.9
2,939,238	-				-0.1
2,939,238	-				+2.8
2,939,238	-				+2.2
2,939,246	+				+0.3
2,939,246	+				-2.4
2,939,246	+				+1.1
2,939,247	-				+0.8
2,939,247	-				+2.4
2,939,247	-				+2.1
2,939,247	-				-1.5
2,939,247	-				+2.5
2,939,262	+				+2.1
2,939,263	-				+2.1
2,939,263	-				+3.6
2,939,263	-				+3.1
2,939,263	-				+1.5
2,939,298	+		DDA3937_RS12890	0.12	+1.7
2,939,298	+				-0.4
2,939,299	-		DDA3937_RS12890	0.12	+1.5
2,939,306	+		DDA3937_RS12890	0.12	+2.3
2,939,306	+		DDA3937_RS12890	0.12	-0.2
2,939,306	+		DDA3937_RS12890	0.12	+0.3
2,939,306	+		DDA3937_RS12890	0.12	-3.3
2,939,307	-		DDA3937_RS12890	0.12	+1.8
2,939,307	-		DDA3937_RS12890	0.12	+3.1
2,939,307	-		DDA3937_RS12890	0.12	+1.0
2,939,307	-		DDA3937_RS12890	0.12	+2.1
2,939,307	-		DDA3937_RS12890	0.12	+2.2
2,939,307	-		DDA3937_RS12890	0.12	+2.6
2,939,307	-		DDA3937_RS12890	0.12	+0.3
2,939,315	-		DDA3937_RS12890	0.13	-0.3
2,939,332	-		DDA3937_RS12890	0.14	+2.1
2,939,369	+		DDA3937_RS12890	0.17	+1.0
2,939,369	+		DDA3937_RS12890	0.17	+1.6
2,939,369	+		DDA3937_RS12890	0.17	-1.0
2,939,370	-		DDA3937_RS12890	0.17	+0.1
2,939,370	-		DDA3937_RS12890	0.17	-2.1
2,939,370	-		DDA3937_RS12890	0.17	+2.7
2,939,370	-		DDA3937_RS12890	0.17	-3.3
2,939,376	-		DDA3937_RS12890	0.18	+0.4
2,939,376	-		DDA3937_RS12890	0.18	+1.9
2,939,483	-		DDA3937_RS12890	0.27	+3.1
2,939,488	+		DDA3937_RS12890	0.27	+2.0
2,939,488	+		DDA3937_RS12890	0.27	+0.4
2,939,771	+		DDA3937_RS12890	0.51	+3.0
2,939,771	+		DDA3937_RS12890	0.51	-0.7
2,939,771	+		DDA3937_RS12890	0.51	+1.5
2,939,771	+		DDA3937_RS12890	0.51	+0.6
2,939,772	-		DDA3937_RS12890	0.51	+2.3
2,939,974	-		DDA3937_RS12890	0.68	-1.3
2,939,990	+		DDA3937_RS12890	0.69	+1.6
2,940,083	-		DDA3937_RS12890	0.77	+1.5
2,940,244	+				+4.0
2,940,245	-				+1.7
2,940,390	+				-1.0
2,940,390	+				-3.4
2,940,397	+				-2.6
2,940,398	-				-0.3
2,940,473	+				+1.9
2,940,473	+				+2.7
2,940,473	+				+1.8
2,940,473	+				+2.9
2,940,478	+				-0.8
2,940,478	+				+2.1
2,940,478	+				+0.2