Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12690

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,883,048	+		DDA3937_RS12675	0.73	-0.9
2,883,048	+		DDA3937_RS12675	0.73	-2.6
2,883,049	-		DDA3937_RS12675	0.73	-2.6
2,883,049	-		DDA3937_RS12675	0.73	-0.3
2,883,054	+		DDA3937_RS12675	0.74	-2.7
2,883,054	+		DDA3937_RS12675	0.74	-1.4
2,883,054	+		DDA3937_RS12675	0.74	-0.3
2,883,054	+		DDA3937_RS12675	0.74	-1.5
2,883,054	+		DDA3937_RS12675	0.74	-1.3
2,883,055	-		DDA3937_RS12675	0.74	-1.1
2,883,055	-		DDA3937_RS12675	0.74	-1.5
2,883,055	-		DDA3937_RS12675	0.74	-1.0
2,883,055	-		DDA3937_RS12675	0.74	-1.7
2,883,055	-		DDA3937_RS12675	0.74	-0.1
2,883,055	-		DDA3937_RS12675	0.74	-1.0
2,883,055	-		DDA3937_RS12675	0.74	-0.8
2,883,073	+				-0.1
2,883,074	-		DDA3937_RS12675	0.78	-1.0
2,883,090	+		DDA3937_RS12675	0.81	-0.4
2,883,090	+		DDA3937_RS12675	0.81	-0.0
2,883,108	+		DDA3937_RS12675	0.84	+1.5
2,883,108	+		DDA3937_RS12675	0.84	-2.1
2,883,108	+		DDA3937_RS12675	0.84	-1.1
2,883,127	+		DDA3937_RS12675	0.87	+0.5
2,883,128	-		DDA3937_RS12675	0.88	-3.6
2,883,130	+		DDA3937_RS12675	0.88	-1.5
2,883,171	+				-0.5
2,883,201	+				-1.5
2,883,201	+				-0.6
2,883,202	-				+2.0
2,883,202	-				+1.2
2,883,202	-				+1.0
2,883,206	+				-2.4
2,883,206	+				-2.3
2,883,207	-				-1.1
2,883,207	-				-1.1
2,883,247	-		DDA3937_RS12680	0.15	-1.1
2,883,395	+		DDA3937_RS12680	0.55	-2.4
2,883,395	+		DDA3937_RS12680	0.55	-0.3
2,883,396	-				-0.8
2,883,396	-		DDA3937_RS12680	0.55	+1.2
2,883,398	+		DDA3937_RS12680	0.56	-1.5
2,883,419	+		DDA3937_RS12680	0.62	-1.5
2,883,419	+		DDA3937_RS12680	0.62	-0.1
2,883,420	-		DDA3937_RS12680	0.62	-1.5
2,883,597	+				-1.4
2,883,658	-		DDA3937_RS12685	0.15	-0.6
2,883,674	-		DDA3937_RS12685	0.19	+0.7
2,883,694	-		DDA3937_RS12685	0.24	+2.3
2,883,696	+		DDA3937_RS12685	0.24	-2.0
2,883,696	+		DDA3937_RS12685	0.24	-2.9
2,883,696	+		DDA3937_RS12685	0.24	-1.1
2,883,697	-		DDA3937_RS12685	0.24	-0.2
2,883,699	+		DDA3937_RS12685	0.25	+1.6
2,883,699	+		DDA3937_RS12685	0.25	-0.9
2,883,700	-		DDA3937_RS12685	0.25	-3.0
2,883,738	+		DDA3937_RS12685	0.34	+2.1
2,883,828	+		DDA3937_RS12685	0.56	+1.1
2,883,829	-		DDA3937_RS12685	0.56	+2.9
2,883,869	-		DDA3937_RS12685	0.65	+1.7
2,883,932	+		DDA3937_RS12685	0.81	-1.3
2,883,959	-		DDA3937_RS12685	0.87	+1.1
2,884,013	-				+0.0
2,884,016	+				-1.5
2,884,021	-				-0.4
2,884,056	-				-2.6
2,884,058	+				-4.1
2,884,082	+				-0.7
2,884,173	+		DDA3937_RS12690	0.12	-0.7
2,884,235	+		DDA3937_RS12690	0.17	-2.4
2,884,265	+		DDA3937_RS12690	0.19	-2.8
2,884,265	+		DDA3937_RS12690	0.19	-3.3
2,884,266	-		DDA3937_RS12690	0.19	-2.4
2,884,269	-		DDA3937_RS12690	0.20	-2.1
2,884,317	+		DDA3937_RS12690	0.24	+1.0
2,884,350	-		DDA3937_RS12690	0.26	+0.1
2,884,416	-		DDA3937_RS12690	0.32	-0.4
2,884,425	-		DDA3937_RS12690	0.33	-2.6
2,884,426	+		DDA3937_RS12690	0.33	-1.5
2,884,427	-		DDA3937_RS12690	0.33	-2.2
2,884,427	-		DDA3937_RS12690	0.33	+0.9
2,884,440	+		DDA3937_RS12690	0.34	+0.9
2,884,440	+		DDA3937_RS12690	0.34	-2.7
2,884,441	-		DDA3937_RS12690	0.34	-0.8
2,884,441	-		DDA3937_RS12690	0.34	-2.5
2,884,441	-		DDA3937_RS12690	0.34	-1.6
2,884,441	-		DDA3937_RS12690	0.34	-2.8
2,884,470	+		DDA3937_RS12690	0.36	-1.1
2,884,471	-		DDA3937_RS12690	0.36	-2.4
2,884,577	-		DDA3937_RS12690	0.45	-0.7
2,884,684	-		DDA3937_RS12690	0.54	-1.1
2,884,700	+		DDA3937_RS12690	0.55	-1.1
2,884,701	-		DDA3937_RS12690	0.55	-1.7
2,884,701	-		DDA3937_RS12690	0.55	-1.8
2,884,701	-		DDA3937_RS12690	0.55	-0.3
2,884,797	+		DDA3937_RS12690	0.63	-0.1
2,884,797	+		DDA3937_RS12690	0.63	+2.5
2,884,797	+		DDA3937_RS12690	0.63	-1.4
2,884,798	-		DDA3937_RS12690	0.64	-1.9
2,884,882	-		DDA3937_RS12690	0.70	-2.7
2,885,037	+		DDA3937_RS12690	0.83	-2.9
2,885,037	+		DDA3937_RS12690	0.83	+1.5
2,885,054	+		DDA3937_RS12690	0.85	+0.7
2,885,055	-		DDA3937_RS12690	0.85	+1.4
2,885,058	+		DDA3937_RS12690	0.85	-1.2
2,885,059	-		DDA3937_RS12690	0.85	-1.1
2,885,059	-		DDA3937_RS12690	0.85	-2.9
2,885,059	-		DDA3937_RS12690	0.85	-1.3
2,885,059	-		DDA3937_RS12690	0.85	-0.1
2,885,124	+				+1.2
2,885,124	+				-1.7
2,885,125	-				-1.7
2,885,125	-				+0.2
2,885,125	-				+0.2
2,885,127	+				+0.1
2,885,127	+				-2.9
2,885,127	+				+0.3
2,885,127	+				-0.2
2,885,127	+				-1.1
2,885,127	+				-0.7
2,885,127	+				-2.2
2,885,128	-				+0.8
2,885,128	-				-1.1
2,885,128	-				-0.5
2,885,128	-				-1.7
2,885,128	-				-1.0
2,885,128	-				-2.0
2,885,128	-				-0.7
2,885,128	-				-2.3
2,885,207	+				+1.0
2,885,220	-				+1.4
2,885,231	+				-1.0
2,885,243	+				+0.9
2,885,301	+				-4.0
2,885,375	+				-2.2
2,885,375	+				-1.4
2,885,375	+				-2.0
2,885,375	+				-0.5
2,885,375	+				+2.2
2,885,375	+				-0.6
2,885,376	-				-2.1
2,885,376	-				-1.5
2,885,376	-				-0.5
2,885,376	-				+0.2
2,885,376	-				-0.5
2,885,376	-				-2.4
2,885,376	-				+0.8
2,885,376	-				+0.8
2,885,376	-				+0.3
2,885,376	-				+0.1
2,885,376	-				+0.8
2,885,377	+				-1.5
2,885,377	+				-0.0
2,885,378	-		DDA3937_RS12695	0.10	-1.2
2,885,378	-		DDA3937_RS12695	0.10	-2.3
2,885,378	-		DDA3937_RS12695	0.10	+0.5
2,885,378	-		DDA3937_RS12695	0.10	+1.2
2,885,401	-		DDA3937_RS12695	0.12	+0.5
2,885,449	-		DDA3937_RS12695	0.15	-0.1
2,885,540	-		DDA3937_RS12695	0.21	+0.2
2,885,616	+		DDA3937_RS12695	0.26	-1.0
2,885,616	+		DDA3937_RS12695	0.26	-0.8
2,885,616	+		DDA3937_RS12695	0.26	+1.5
2,885,616	+		DDA3937_RS12695	0.26	+0.5
2,885,616	+		DDA3937_RS12695	0.26	-1.7
2,885,617	-		DDA3937_RS12695	0.26	+0.8
2,885,617	-		DDA3937_RS12695	0.26	-1.1
2,885,626	+		DDA3937_RS12695	0.27	-1.8
2,885,626	+		DDA3937_RS12695	0.27	-0.5
2,885,626	+		DDA3937_RS12695	0.27	-2.1
2,885,627	-		DDA3937_RS12695	0.27	+0.9
2,885,627	-		DDA3937_RS12695	0.27	-0.5
2,885,627	-		DDA3937_RS12695	0.27	-1.4
2,885,673	+		DDA3937_RS12695	0.30	-1.1
2,885,673	+		DDA3937_RS12695	0.30	-1.8
2,885,674	-		DDA3937_RS12695	0.30	+0.6
2,885,674	-		DDA3937_RS12695	0.30	+2.2
2,885,674	-		DDA3937_RS12695	0.30	-1.8
2,885,674	-		DDA3937_RS12695	0.30	+0.5
2,885,758	+		DDA3937_RS12695	0.36	-2.4
2,885,861	+		DDA3937_RS12695	0.43	-0.7
2,885,862	-		DDA3937_RS12695	0.43	+0.2
2,885,862	-		DDA3937_RS12695	0.43	-0.7
2,885,862	-		DDA3937_RS12695	0.43	-0.3
2,885,889	+		DDA3937_RS12695	0.45	-2.0
2,885,890	-		DDA3937_RS12695	0.45	+0.5
2,885,890	-		DDA3937_RS12695	0.45	+1.7
2,885,928	-		DDA3937_RS12695	0.47	-1.6
2,885,928	-		DDA3937_RS12695	0.47	-1.2
2,885,928	-		DDA3937_RS12695	0.47	-0.2
2,885,928	-		DDA3937_RS12695	0.47	+0.0
2,886,043	+		DDA3937_RS12695	0.55	-0.5
2,886,044	-		DDA3937_RS12695	0.55	-1.7
2,886,044	-		DDA3937_RS12695	0.55	-2.1
2,886,067	-		DDA3937_RS12695	0.57	+0.3
2,886,151	+		DDA3937_RS12695	0.62	-0.3
2,886,152	-		DDA3937_RS12695	0.62	-2.7
2,886,152	-		DDA3937_RS12695	0.62	-3.2
2,886,207	+		DDA3937_RS12695	0.66	-0.5
2,886,207	+		DDA3937_RS12695	0.66	-1.7
2,886,207	+		DDA3937_RS12695	0.66	+0.7
2,886,207	+		DDA3937_RS12695	0.66	+0.7
2,886,207	+		DDA3937_RS12695	0.66	-0.8
2,886,208	-		DDA3937_RS12695	0.66	-1.5
2,886,208	-		DDA3937_RS12695	0.66	+0.5
2,886,208	-		DDA3937_RS12695	0.66	-3.0