Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11840

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,690,469	-		DDA3937_RS11835	0.66	-0.4
2,690,469	-		DDA3937_RS11835	0.66	-0.5
2,690,495	+		DDA3937_RS11835	0.68	+2.4
2,690,516	+		DDA3937_RS11835	0.69	-0.2
2,690,516	+		DDA3937_RS11835	0.69	+0.3
2,690,516	+		DDA3937_RS11835	0.69	-2.0
2,690,516	+		DDA3937_RS11835	0.69	+1.1
2,690,516	+		DDA3937_RS11835	0.69	-1.5
2,690,516	+		DDA3937_RS11835	0.69	-1.4
2,690,516	+		DDA3937_RS11835	0.69	-1.9
2,690,517	-		DDA3937_RS11835	0.69	+0.2
2,690,517	-		DDA3937_RS11835	0.69	-2.5
2,690,517	-		DDA3937_RS11835	0.69	-2.2
2,690,517	-		DDA3937_RS11835	0.69	-0.3
2,690,517	-		DDA3937_RS11835	0.69	-0.9
2,690,517	-		DDA3937_RS11835	0.69	+0.3
2,690,571	+		DDA3937_RS11835	0.73	-0.9
2,690,571	+		DDA3937_RS11835	0.73	-0.5
2,690,571	+		DDA3937_RS11835	0.73	-2.0
2,690,572	-		DDA3937_RS11835	0.73	-2.9
2,690,574	-		DDA3937_RS11835	0.73	-2.4
2,690,601	+		DDA3937_RS11835	0.75	+0.2
2,690,601	+		DDA3937_RS11835	0.75	-0.2
2,690,634	-		DDA3937_RS11835	0.77	+1.1
2,690,666	+		DDA3937_RS11835	0.79	+0.8
2,690,666	+		DDA3937_RS11835	0.79	+2.1
2,690,666	+		DDA3937_RS11835	0.79	-1.9
2,690,723	+		DDA3937_RS11835	0.83	-2.6
2,690,724	-		DDA3937_RS11835	0.83	+0.9
2,690,732	+		DDA3937_RS11835	0.84	-2.3
2,690,732	+		DDA3937_RS11835	0.84	-0.2
2,690,733	-		DDA3937_RS11835	0.84	-2.3
2,690,733	-		DDA3937_RS11835	0.84	+0.8
2,690,733	-		DDA3937_RS11835	0.84	-1.6
2,690,740	+		DDA3937_RS11835	0.84	-0.2
2,690,846	+				-0.6
2,690,847	-				+0.6
2,690,850	-				-0.2
2,690,850	-				-0.9
2,690,850	-				+1.2
2,690,888	+				+0.8
2,690,931	+				+1.4
2,691,083	+				-0.6
2,691,084	-				+0.0
2,691,096	-				-0.3
2,691,096	-				-1.3
2,691,113	+				-1.0
2,691,114	-				-1.2
2,691,114	-				-0.2
2,691,146	+				-1.4
2,691,146	+				-1.8
2,691,146	+				-1.2
2,691,146	+				-2.1
2,691,146	+				-2.4
2,691,146	+				-2.5
2,691,147	-				-2.8
2,691,147	-				+1.5
2,691,147	-				-1.8
2,691,180	+				-0.8
2,691,202	+				+0.8
2,691,203	-				-0.6
2,691,203	-				+1.0
2,691,250	-				-0.0
2,691,281	+				-0.9
2,691,281	+				-2.0
2,691,282	-				+1.4
2,691,282	-				+0.7
2,691,282	-				-1.1
2,691,285	-				-2.0
2,691,288	-				+0.9
2,691,293	+				-1.9
2,691,294	-				+0.6
2,691,294	-				+0.6
2,691,323	+				+0.3
2,691,323	+				+0.4
2,691,323	+				-2.8
2,691,324	-				-0.5
2,691,324	-				-2.4
2,691,324	-				-1.6
2,691,329	+				-2.7
2,691,329	+				+1.9
2,691,330	-				-1.6
2,691,330	-				-1.2
2,691,330	-				+0.2
2,691,333	+				+1.7
2,691,333	+				+0.3
2,691,334	-				+0.4
2,691,334	-				-1.6
2,691,334	-				-1.5
2,691,334	-				+0.6
2,691,386	-				-0.8
2,691,386	-				-0.6
2,691,386	-				-0.6
2,691,415	+				-2.6
2,691,616	-		DDA3937_RS11840	0.22	-2.9
2,691,631	+		DDA3937_RS11840	0.23	+1.1
2,691,631	+		DDA3937_RS11840	0.23	-3.4
2,691,631	+		DDA3937_RS11840	0.23	-0.5
2,691,631	+		DDA3937_RS11840	0.23	-1.8
2,691,632	-		DDA3937_RS11840	0.23	+1.0
2,691,946	+		DDA3937_RS11840	0.52	-1.2
2,691,946	+		DDA3937_RS11840	0.52	-0.6
2,691,947	-		DDA3937_RS11840	0.52	-3.3
2,691,947	-		DDA3937_RS11840	0.52	-1.2
2,691,947	-		DDA3937_RS11840	0.52	-0.5
2,692,045	+		DDA3937_RS11840	0.61	+0.8
2,692,045	+		DDA3937_RS11840	0.61	-3.0
2,692,045	+		DDA3937_RS11840	0.61	-0.5
2,692,045	+		DDA3937_RS11840	0.61	-2.8
2,692,045	+		DDA3937_RS11840	0.61	+0.4
2,692,045	+		DDA3937_RS11840	0.61	-0.9
2,692,046	-		DDA3937_RS11840	0.61	+1.0
2,692,046	-		DDA3937_RS11840	0.61	-0.1
2,692,046	-		DDA3937_RS11840	0.61	+0.7
2,692,133	-		DDA3937_RS11840	0.69	-0.4
2,692,133	-		DDA3937_RS11840	0.69	-1.2
2,692,136	-		DDA3937_RS11840	0.69	-2.1
2,692,136	-		DDA3937_RS11840	0.69	+0.1
2,692,166	+		DDA3937_RS11840	0.72	+0.1
2,692,299	+		DDA3937_RS11840	0.84	-1.1
2,692,300	-				+3.6
2,692,303	+		DDA3937_RS11840	0.85	-0.9
2,692,303	+		DDA3937_RS11840	0.85	-1.4
2,692,304	-		DDA3937_RS11840	0.85	-2.5
2,692,304	-		DDA3937_RS11840	0.85	+0.9
2,692,319	+		DDA3937_RS11840	0.86	-3.0
2,692,319	+		DDA3937_RS11840	0.86	-1.2
2,692,319	+		DDA3937_RS11840	0.86	-1.4
2,692,319	+		DDA3937_RS11840	0.86	-1.6
2,692,319	+		DDA3937_RS11840	0.86	+0.4
2,692,319	+		DDA3937_RS11840	0.86	-0.2
2,692,320	-		DDA3937_RS11840	0.86	-0.2
2,692,320	-		DDA3937_RS11840	0.86	+0.0
2,692,320	-		DDA3937_RS11840	0.86	-1.5
2,692,320	-		DDA3937_RS11840	0.86	-0.0
2,692,320	-		DDA3937_RS11840	0.86	-2.2
2,692,320	-		DDA3937_RS11840	0.86	-2.5
2,692,320	-		DDA3937_RS11840	0.86	+0.4
2,692,320	-		DDA3937_RS11840	0.86	-1.8
2,692,320	-		DDA3937_RS11840	0.86	-1.2
2,692,320	-		DDA3937_RS11840	0.86	-2.8
2,692,356	+		DDA3937_RS11840	0.89	+1.5
2,692,356	+		DDA3937_RS11840	0.89	+0.4
2,692,461	+				-2.0
2,692,479	+				-0.4
2,692,490	-				+1.4
2,692,535	+				-1.2
2,692,536	-				-0.9
2,692,538	+				-1.6
2,692,538	+				-2.3
2,692,538	+				-0.7
2,692,635	+				-2.4
2,692,636	-				-3.1
2,692,648	+				-1.4
2,692,648	+				-3.0
2,692,648	+				+0.8
2,692,648	+				+1.2
2,692,648	+				+1.6
2,692,648	+				-0.2
2,692,648	+				+0.4
2,692,648	+				-1.6
2,692,648	+				-2.3
2,692,648	+				-0.1
2,692,648	+				-1.9
2,692,649	-				-1.6
2,692,649	-				-2.0
2,692,649	-				-0.5
2,692,649	-				+0.4
2,692,650	+				+0.2
2,692,650	+				-0.5
2,692,650	+				-1.8
2,692,650	+				-2.3
2,692,650	+				-0.6
2,692,651	-				+0.2
2,692,651	-				-0.9
2,692,672	+				-2.0
2,692,673	-				-1.8
2,692,744	+		DDA3937_RS11845	0.40	+2.2
2,692,744	+		DDA3937_RS11845	0.40	-1.3
2,692,745	-		DDA3937_RS11845	0.41	+0.4
2,692,745	-		DDA3937_RS11845	0.41	-1.6
2,692,745	-		DDA3937_RS11845	0.41	+0.6
2,692,746	+		DDA3937_RS11845	0.41	+0.5
2,692,747	-		DDA3937_RS11845	0.42	-1.8
2,692,747	-		DDA3937_RS11845	0.42	-0.5
2,692,747	-		DDA3937_RS11845	0.42	-0.4
2,692,870	+				-0.8
2,692,871	-				+1.1
2,693,042	+				+0.1
2,693,084	+				+2.0
2,693,084	+				-1.5
2,693,085	-				-0.3
2,693,085	-				-0.9
2,693,085	-				-3.3
2,693,088	+				+0.6
2,693,088	+				-3.0
2,693,089	-				-1.6
2,693,108	-				+0.9
2,693,185	+				+1.8
2,693,202	-				+0.3
2,693,202	-				+1.8
2,693,215	+				+2.0
2,693,262	+				-2.8
2,693,267	+				-1.0
2,693,429	+				-1.4
2,693,429	+				+0.7
2,693,446	+				-1.8
2,693,446	+				-0.2