Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11650

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,647,550	+				+0.3
2,647,551	-				+0.4
2,647,551	-				-2.0
2,647,557	+				+0.0
2,647,558	-				-1.0
2,647,573	+				-2.4
2,647,626	+				-1.0
2,647,648	-				-2.4
2,647,648	-				+1.6
2,647,648	-				+2.1
2,647,648	-				-2.2
2,647,650	+				-0.2
2,647,659	-				-3.0
2,647,663	-				-3.1
2,647,673	+				+1.4
2,647,673	+				+1.0
2,647,674	-				-2.2
2,647,674	-				-3.5
2,647,681	-				-0.9
2,647,754	+				-1.4
2,647,755	-				-2.2
2,647,755	-				-1.4
2,647,837	-				-4.1
2,647,837	-				-1.6
2,647,864	+				+1.9
2,647,864	+				-2.4
2,647,864	+				-1.4
2,647,864	+				-1.9
2,647,864	+				-0.2
2,647,864	+				-0.8
2,647,864	+				-0.8
2,647,865	-				-1.9
2,647,865	-				+0.4
2,647,865	-				-1.5
2,647,871	+				+2.5
2,647,871	+				-2.8
2,647,872	-				-0.3
2,647,872	-				+0.7
2,647,904	+				-2.0
2,647,905	-				-0.9
2,647,905	-				-1.6
2,647,905	-				+0.8
2,647,959	+		DDA3937_RS11645	0.13	-3.4
2,647,960	-		DDA3937_RS11645	0.13	+0.7
2,648,073	+		DDA3937_RS11645	0.31	-0.3
2,648,073	+		DDA3937_RS11645	0.31	-2.3
2,648,107	+		DDA3937_RS11645	0.36	-0.4
2,648,107	+		DDA3937_RS11645	0.36	+0.7
2,648,108	-		DDA3937_RS11645	0.36	+1.1
2,648,108	-				-1.4
2,648,108	-		DDA3937_RS11645	0.36	-2.0
2,648,138	+		DDA3937_RS11645	0.41	-0.2
2,648,138	+		DDA3937_RS11645	0.41	-2.1
2,648,138	+		DDA3937_RS11645	0.41	-0.9
2,648,139	-		DDA3937_RS11645	0.41	+0.5
2,648,205	+		DDA3937_RS11645	0.51	+0.5
2,648,205	+		DDA3937_RS11645	0.51	-1.8
2,648,205	+		DDA3937_RS11645	0.51	+0.8
2,648,206	-		DDA3937_RS11645	0.51	-0.2
2,648,206	-		DDA3937_RS11645	0.51	-1.8
2,648,207	+		DDA3937_RS11645	0.52	-2.8
2,648,208	-		DDA3937_RS11645	0.52	-1.4
2,648,228	-		DDA3937_RS11645	0.55	+0.0
2,648,258	+		DDA3937_RS11645	0.60	-4.1
2,648,258	+		DDA3937_RS11645	0.60	-2.2
2,648,258	+		DDA3937_RS11645	0.60	+1.9
2,648,259	-		DDA3937_RS11645	0.60	-0.2
2,648,472	+				+0.7
2,648,472	+				-3.3
2,648,473	-				-2.2
2,648,476	+				-1.8
2,648,477	-				-1.2
2,648,503	+				-4.3
2,648,504	-				-0.2
2,648,549	+				+0.7
2,648,549	+				-1.6
2,648,550	-				+1.4
2,648,550	-				-2.7
2,648,608	+				-1.1
2,648,807	-		DDA3937_RS11650	0.18	+0.3
2,648,959	+		DDA3937_RS11650	0.28	+1.0
2,648,960	-		DDA3937_RS11650	0.28	+0.0
2,648,998	-		DDA3937_RS11650	0.31	-2.9
2,649,036	+		DDA3937_RS11650	0.33	-1.8
2,649,036	+		DDA3937_RS11650	0.33	+1.1
2,649,036	+		DDA3937_RS11650	0.33	-0.5
2,649,036	+		DDA3937_RS11650	0.33	+0.3
2,649,037	-		DDA3937_RS11650	0.33	-1.5
2,649,037	-		DDA3937_RS11650	0.33	+0.3
2,649,037	-		DDA3937_RS11650	0.33	-0.3
2,649,037	-		DDA3937_RS11650	0.33	+2.0
2,649,063	+		DDA3937_RS11650	0.35	+1.3
2,649,063	+		DDA3937_RS11650	0.35	-2.3
2,649,064	-				-0.9
2,649,389	-		DDA3937_RS11650	0.57	-1.9
2,649,596	+		DDA3937_RS11650	0.71	-2.0
2,649,630	+		DDA3937_RS11650	0.74	-1.9
2,649,631	-		DDA3937_RS11650	0.74	-1.6
2,649,638	-		DDA3937_RS11650	0.74	-2.2
2,649,638	-		DDA3937_RS11650	0.74	-1.3
2,649,638	-		DDA3937_RS11650	0.74	+2.6
2,649,640	+		DDA3937_RS11650	0.74	-1.9
2,649,640	+		DDA3937_RS11650	0.74	-1.2
2,649,640	+		DDA3937_RS11650	0.74	-2.6
2,649,640	+		DDA3937_RS11650	0.74	-0.8
2,649,648	+		DDA3937_RS11650	0.75	-2.5
2,649,648	+		DDA3937_RS11650	0.75	-0.7
2,649,648	+		DDA3937_RS11650	0.75	+1.2
2,649,648	+		DDA3937_RS11650	0.75	+0.5
2,649,648	+		DDA3937_RS11650	0.75	+2.8
2,649,648	+		DDA3937_RS11650	0.75	-1.6
2,649,648	+		DDA3937_RS11650	0.75	-2.7
2,649,649	-		DDA3937_RS11650	0.75	+0.3
2,649,649	-		DDA3937_RS11650	0.75	+0.8
2,649,649	-		DDA3937_RS11650	0.75	-0.1
2,649,649	-		DDA3937_RS11650	0.75	-3.8
2,649,666	+		DDA3937_RS11650	0.76	+1.0
2,649,666	+		DDA3937_RS11650	0.76	+0.4
2,649,670	+		DDA3937_RS11650	0.76	-1.4
2,649,671	-		DDA3937_RS11650	0.77	+1.0
2,649,671	-		DDA3937_RS11650	0.77	-0.4
2,649,723	+		DDA3937_RS11650	0.80	-1.6
2,649,820	+		DDA3937_RS11650	0.87	+0.3
2,649,821	-		DDA3937_RS11650	0.87	+0.3
2,649,828	+		DDA3937_RS11650	0.87	-0.2
2,649,912	+				-1.2
2,649,914	+				-1.6
2,649,914	+				-2.0
2,649,914	+				-0.7
2,649,915	-				-0.2
2,649,915	-				+0.3
2,649,915	-				-1.8
2,649,915	-				-1.6
2,649,937	-				+0.7
2,649,967	+				-2.3
2,649,968	-				+3.0
2,649,968	-				-1.2
2,650,005	+				+0.5
2,650,007	+				-2.4
2,650,008	-				-1.2
2,650,008	-				-1.4
2,650,009	+				-3.8
2,650,009	+				-0.9
2,650,009	+				+0.8
2,650,009	+				+0.5
2,650,009	+				-1.9
2,650,009	+				-2.2
2,650,009	+				+0.4
2,650,009	+				-0.5
2,650,009	+				-1.2
2,650,009	+				+1.2
2,650,009	+				-1.0
2,650,009	+				-2.5
2,650,009	+				+0.6
2,650,009	+				+1.4
2,650,009	+				-2.7
2,650,009	+				-2.0
2,650,009	+				+1.0
2,650,009	+				-1.0
2,650,009	+				-1.1
2,650,009	+				+0.2
2,650,009	+				+0.3
2,650,009	+				-1.2
2,650,009	+				-1.2
2,650,010	-				+0.1
2,650,010	-				+0.4
2,650,010	-				-2.2
2,650,010	-				+0.4
2,650,010	-				-0.8
2,650,010	-				-2.8
2,650,010	-				-0.7
2,650,010	-				+1.6
2,650,010	-				+1.4
2,650,010	-				-0.9
2,650,029	+				-0.9
2,650,125	-				-1.5
2,650,162	+				+2.4
2,650,201	+				-1.2
2,650,232	+				+1.9
2,650,232	+				+0.9
2,650,232	+				-0.3
2,650,233	-				-2.2
2,650,233	-				-0.6
2,650,233	-				-0.3
2,650,234	+				+0.3
2,650,235	-				-1.2
2,650,235	-				+0.1
2,650,235	-				-0.9
2,650,275	+				-2.5
2,650,275	+				-1.6
2,650,275	+				-0.6
2,650,275	+				-1.8
2,650,276	-				-1.8
2,650,276	-				+1.1
2,650,276	-				-0.7
2,650,276	-				+1.1
2,650,328	+				+0.4
2,650,328	+				-1.5
2,650,329	-				+0.9
2,650,329	-				+1.3
2,650,329	-				+0.5
2,650,340	-		DDA3937_RS11655	0.12	-0.2
2,650,371	+		DDA3937_RS11655	0.17	-2.2
2,650,601	+		DDA3937_RS11655	0.59	-1.2
2,650,662	+		DDA3937_RS11655	0.70	+0.6
2,650,662	+		DDA3937_RS11655	0.70	-2.8
2,650,662	+		DDA3937_RS11655	0.70	-0.2
2,650,663	-		DDA3937_RS11655	0.70	-0.2
2,650,663	-		DDA3937_RS11655	0.70	-0.4
2,650,771	+		DDA3937_RS11655	0.90	-1.8
2,650,983	-				-1.8