Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11125

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS11120 and DDA3937_RS11125 are separated by 182 nucleotidesDDA3937_RS11125 and DDA3937_RS22230 are separated by 403 nucleotides DDA3937_RS11120: DDA3937_RS11120 - Pathogenicity locus protein hrpK, at 2,517,540 to 2,519,255 _RS11120 DDA3937_RS11125: DDA3937_RS11125 - hypothetical protein, at 2,519,438 to 2,519,617 _RS11125 DDA3937_RS22230: DDA3937_RS22230 - hemagglutinin, at 2,520,021 to 2,520,632 _RS22230 Position (kb) 2519 2520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2518.454 kb on + strand, within DDA3937_RS11120at 2518.454 kb on + strand, within DDA3937_RS11120at 2518.699 kb on + strand, within DDA3937_RS11120at 2518.749 kb on + strand, within DDA3937_RS11120at 2518.780 kb on + strand, within DDA3937_RS11120at 2518.780 kb on + strand, within DDA3937_RS11120at 2518.780 kb on + strand, within DDA3937_RS11120at 2518.781 kb on - strand, within DDA3937_RS11120at 2518.781 kb on - strand, within DDA3937_RS11120at 2518.849 kb on + strand, within DDA3937_RS11120at 2518.849 kb on + strand, within DDA3937_RS11120at 2518.849 kb on + strand, within DDA3937_RS11120at 2518.849 kb on + strand, within DDA3937_RS11120at 2518.850 kb on - strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.016 kb on + strand, within DDA3937_RS11120at 2519.017 kb on - strand, within DDA3937_RS11120at 2519.017 kb on - strand, within DDA3937_RS11120at 2519.017 kb on - strand, within DDA3937_RS11120at 2519.017 kb on - strand, within DDA3937_RS11120at 2519.240 kb on + strandat 2519.246 kb on + strandat 2519.246 kb on + strandat 2519.247 kb on - strandat 2519.285 kb on + strandat 2519.382 kb on - strandat 2519.382 kb on - strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.433 kb on + strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.434 kb on - strandat 2519.495 kb on + strand, within DDA3937_RS11125at 2519.495 kb on + strand, within DDA3937_RS11125at 2519.495 kb on + strand, within DDA3937_RS11125at 2519.495 kb on + strand, within DDA3937_RS11125at 2519.496 kb on - strand, within DDA3937_RS11125at 2519.551 kb on + strand, within DDA3937_RS11125at 2519.927 kb on + strandat 2519.929 kb on + strandat 2519.930 kb on - strandat 2519.931 kb on + strandat 2519.932 kb on - strandat 2519.935 kb on + strandat 2519.935 kb on + strandat 2519.936 kb on - strandat 2519.936 kb on - strandat 2519.976 kb on - strandat 2520.006 kb on - strandat 2520.017 kb on + strandat 2520.018 kb on - strandat 2520.056 kb on - strandat 2520.057 kb on + strandat 2520.057 kb on + strandat 2520.057 kb on + strandat 2520.058 kb on - strandat 2520.059 kb on + strandat 2520.059 kb on + strandat 2520.060 kb on - strandat 2520.166 kb on + strand, within DDA3937_RS22230at 2520.167 kb on - strand, within DDA3937_RS22230at 2520.348 kb on - strand, within DDA3937_RS22230

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,518,454 + DDA3937_RS11120 0.53 -1.1
2,518,454 + DDA3937_RS11120 0.53 -1.1
2,518,699 + DDA3937_RS11120 0.68 -0.8
2,518,749 + DDA3937_RS11120 0.70 +1.0
2,518,780 + DDA3937_RS11120 0.72 -2.0
2,518,780 + DDA3937_RS11120 0.72 -2.1
2,518,780 + DDA3937_RS11120 0.72 -1.3
2,518,781 - DDA3937_RS11120 0.72 -0.8
2,518,781 - DDA3937_RS11120 0.72 +1.5
2,518,849 + DDA3937_RS11120 0.76 -1.2
2,518,849 + DDA3937_RS11120 0.76 +0.0
2,518,849 + DDA3937_RS11120 0.76 +3.2
2,518,849 + DDA3937_RS11120 0.76 +0.5
2,518,850 - DDA3937_RS11120 0.76 +3.4
2,519,016 + DDA3937_RS11120 0.86 -0.2
2,519,016 + DDA3937_RS11120 0.86 +0.2
2,519,016 + DDA3937_RS11120 0.86 -2.2
2,519,016 + DDA3937_RS11120 0.86 -0.3
2,519,016 + DDA3937_RS11120 0.86 -1.9
2,519,016 + DDA3937_RS11120 0.86 -2.0
2,519,016 + DDA3937_RS11120 0.86 -1.8
2,519,016 + DDA3937_RS11120 0.86 -1.5
2,519,016 + DDA3937_RS11120 0.86 +1.6
2,519,017 - DDA3937_RS11120 0.86 -2.7
2,519,017 - DDA3937_RS11120 0.86 +1.5
2,519,017 - DDA3937_RS11120 0.86 -1.1
2,519,017 - DDA3937_RS11120 0.86 -1.4
2,519,240 + -0.8
2,519,246 + +0.2
2,519,246 + -1.5
2,519,247 - +0.5
2,519,285 + -0.0
2,519,382 - -1.6
2,519,382 - +0.2
2,519,433 + -3.5
2,519,433 + +1.0
2,519,433 + +1.1
2,519,433 + -1.6
2,519,433 + +0.1
2,519,433 + -0.3
2,519,433 + +0.3
2,519,433 + -1.7
2,519,433 + -2.3
2,519,434 - +0.9
2,519,434 - +2.1
2,519,434 - -2.0
2,519,434 - -1.4
2,519,434 - +1.6
2,519,434 - -1.5
2,519,434 - +0.5
2,519,495 + DDA3937_RS11125 0.32 -1.8
2,519,495 + DDA3937_RS11125 0.32 +0.3
2,519,495 + DDA3937_RS11125 0.32 -3.2
2,519,495 + DDA3937_RS11125 0.32 -0.8
2,519,496 - DDA3937_RS11125 0.32 -1.3
2,519,551 + DDA3937_RS11125 0.63 -2.7
2,519,927 + +0.7
2,519,929 + -1.1
2,519,930 - -2.0
2,519,931 + +0.6
2,519,932 - -1.9
2,519,935 + -1.3
2,519,935 + +3.8
2,519,936 - -1.3
2,519,936 - +0.7
2,519,976 - -3.8
2,520,006 - -0.1
2,520,017 + -1.1
2,520,018 - +1.0
2,520,056 - -0.1
2,520,057 + -0.1
2,520,057 + -1.3
2,520,057 + -2.4
2,520,058 - -2.4
2,520,059 + -1.2
2,520,059 + +0.1
2,520,060 - -0.5
2,520,166 + DDA3937_RS22230 0.24 -1.1
2,520,167 - DDA3937_RS22230 0.24 -2.0
2,520,348 - DDA3937_RS22230 0.53 -0.1

Or see this region's nucleotide sequence