Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS11120 and DDA3937_RS11125 are separated by 182 nucleotides DDA3937_RS11125 and DDA3937_RS22230 are separated by 403 nucleotides
DDA3937_RS11120: DDA3937_RS11120 - Pathogenicity locus protein hrpK, at 2,517,540 to 2,519,255
_RS11120
DDA3937_RS11125: DDA3937_RS11125 - hypothetical protein, at 2,519,438 to 2,519,617
_RS11125
DDA3937_RS22230: DDA3937_RS22230 - hemagglutinin, at 2,520,021 to 2,520,632
_RS22230
Position (kb)
2519
2520 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2518.454 kb on + strand, within DDA3937_RS11120 at 2518.454 kb on + strand, within DDA3937_RS11120 at 2518.699 kb on + strand, within DDA3937_RS11120 at 2518.749 kb on + strand, within DDA3937_RS11120 at 2518.780 kb on + strand, within DDA3937_RS11120 at 2518.780 kb on + strand, within DDA3937_RS11120 at 2518.780 kb on + strand, within DDA3937_RS11120 at 2518.781 kb on - strand, within DDA3937_RS11120 at 2518.781 kb on - strand, within DDA3937_RS11120 at 2518.849 kb on + strand, within DDA3937_RS11120 at 2518.849 kb on + strand, within DDA3937_RS11120 at 2518.849 kb on + strand, within DDA3937_RS11120 at 2518.849 kb on + strand, within DDA3937_RS11120 at 2518.850 kb on - strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.016 kb on + strand, within DDA3937_RS11120 at 2519.017 kb on - strand, within DDA3937_RS11120 at 2519.017 kb on - strand, within DDA3937_RS11120 at 2519.017 kb on - strand, within DDA3937_RS11120 at 2519.017 kb on - strand, within DDA3937_RS11120 at 2519.240 kb on + strand at 2519.246 kb on + strand at 2519.246 kb on + strand at 2519.247 kb on - strand at 2519.285 kb on + strand at 2519.382 kb on - strand at 2519.382 kb on - strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.433 kb on + strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.434 kb on - strand at 2519.495 kb on + strand, within DDA3937_RS11125 at 2519.495 kb on + strand, within DDA3937_RS11125 at 2519.495 kb on + strand, within DDA3937_RS11125 at 2519.495 kb on + strand, within DDA3937_RS11125 at 2519.496 kb on - strand, within DDA3937_RS11125 at 2519.551 kb on + strand, within DDA3937_RS11125 at 2519.927 kb on + strand at 2519.929 kb on + strand at 2519.930 kb on - strand at 2519.931 kb on + strand at 2519.932 kb on - strand at 2519.935 kb on + strand at 2519.935 kb on + strand at 2519.936 kb on - strand at 2519.936 kb on - strand at 2519.976 kb on - strand at 2520.006 kb on - strand at 2520.017 kb on + strand at 2520.018 kb on - strand at 2520.056 kb on - strand at 2520.057 kb on + strand at 2520.057 kb on + strand at 2520.057 kb on + strand at 2520.058 kb on - strand at 2520.059 kb on + strand at 2520.059 kb on + strand at 2520.060 kb on - strand at 2520.166 kb on + strand, within DDA3937_RS22230 at 2520.167 kb on - strand, within DDA3937_RS22230 at 2520.348 kb on - strand, within DDA3937_RS22230
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,518,454 + DDA3937_RS11120 0.53 -1.1 2,518,454 + DDA3937_RS11120 0.53 -1.1 2,518,699 + DDA3937_RS11120 0.68 -0.8 2,518,749 + DDA3937_RS11120 0.70 +1.0 2,518,780 + DDA3937_RS11120 0.72 -2.0 2,518,780 + DDA3937_RS11120 0.72 -2.1 2,518,780 + DDA3937_RS11120 0.72 -1.3 2,518,781 - DDA3937_RS11120 0.72 -0.8 2,518,781 - DDA3937_RS11120 0.72 +1.5 2,518,849 + DDA3937_RS11120 0.76 -1.2 2,518,849 + DDA3937_RS11120 0.76 +0.0 2,518,849 + DDA3937_RS11120 0.76 +3.2 2,518,849 + DDA3937_RS11120 0.76 +0.5 2,518,850 - DDA3937_RS11120 0.76 +3.4 2,519,016 + DDA3937_RS11120 0.86 -0.2 2,519,016 + DDA3937_RS11120 0.86 +0.2 2,519,016 + DDA3937_RS11120 0.86 -2.2 2,519,016 + DDA3937_RS11120 0.86 -0.3 2,519,016 + DDA3937_RS11120 0.86 -1.9 2,519,016 + DDA3937_RS11120 0.86 -2.0 2,519,016 + DDA3937_RS11120 0.86 -1.8 2,519,016 + DDA3937_RS11120 0.86 -1.5 2,519,016 + DDA3937_RS11120 0.86 +1.6 2,519,017 - DDA3937_RS11120 0.86 -2.7 2,519,017 - DDA3937_RS11120 0.86 +1.5 2,519,017 - DDA3937_RS11120 0.86 -1.1 2,519,017 - DDA3937_RS11120 0.86 -1.4 2,519,240 + -0.8 2,519,246 + +0.2 2,519,246 + -1.5 2,519,247 - +0.5 2,519,285 + -0.0 2,519,382 - -1.6 2,519,382 - +0.2 2,519,433 + -3.5 2,519,433 + +1.0 2,519,433 + +1.1 2,519,433 + -1.6 2,519,433 + +0.1 2,519,433 + -0.3 2,519,433 + +0.3 2,519,433 + -1.7 2,519,433 + -2.3 2,519,434 - +0.9 2,519,434 - +2.1 2,519,434 - -2.0 2,519,434 - -1.4 2,519,434 - +1.6 2,519,434 - -1.5 2,519,434 - +0.5 2,519,495 + DDA3937_RS11125 0.32 -1.8 2,519,495 + DDA3937_RS11125 0.32 +0.3 2,519,495 + DDA3937_RS11125 0.32 -3.2 2,519,495 + DDA3937_RS11125 0.32 -0.8 2,519,496 - DDA3937_RS11125 0.32 -1.3 2,519,551 + DDA3937_RS11125 0.63 -2.7 2,519,927 + +0.7 2,519,929 + -1.1 2,519,930 - -2.0 2,519,931 + +0.6 2,519,932 - -1.9 2,519,935 + -1.3 2,519,935 + +3.8 2,519,936 - -1.3 2,519,936 - +0.7 2,519,976 - -3.8 2,520,006 - -0.1 2,520,017 + -1.1 2,520,018 - +1.0 2,520,056 - -0.1 2,520,057 + -0.1 2,520,057 + -1.3 2,520,057 + -2.4 2,520,058 - -2.4 2,520,059 + -1.2 2,520,059 + +0.1 2,520,060 - -0.5 2,520,166 + DDA3937_RS22230 0.24 -1.1 2,520,167 - DDA3937_RS22230 0.24 -2.0 2,520,348 - DDA3937_RS22230 0.53 -0.1
Or see this region's nucleotide sequence