Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,461,445	+				-1.0
2,461,449	+				-2.2
2,461,449	+				-1.5
2,461,450	-				-2.5
2,461,460	+				-1.7
2,461,460	+				-1.0
2,461,461	-				-1.5
2,461,461	-				-0.8
2,461,473	+				-1.8
2,461,473	+				-1.7
2,461,474	-				+0.2
2,461,502	+				+0.8
2,461,559	+				+0.7
2,461,559	+				-0.9
2,461,570	+				-2.9
2,461,570	+				-2.7
2,461,570	+				+1.1
2,461,571	-				+1.2
2,461,592	+				-0.3
2,461,592	+				-3.1
2,461,592	+				-0.1
2,461,599	-				-0.1
2,461,599	-				+0.8
2,461,647	+		DDA3937_RS10910	0.11	-1.7
2,461,647	+		DDA3937_RS10910	0.11	-1.7
2,461,647	+		DDA3937_RS10910	0.11	+0.3
2,461,647	+		DDA3937_RS10910	0.11	-1.3
2,461,647	+		DDA3937_RS10910	0.11	+0.6
2,461,647	+		DDA3937_RS10910	0.11	+1.1
2,461,647	+		DDA3937_RS10910	0.11	-2.0
2,461,647	+		DDA3937_RS10910	0.11	+0.1
2,461,647	+		DDA3937_RS10910	0.11	+1.2
2,461,647	+		DDA3937_RS10910	0.11	-2.1
2,461,647	+		DDA3937_RS10910	0.11	-1.6
2,461,647	+		DDA3937_RS10910	0.11	-0.6
2,461,648	-		DDA3937_RS10910	0.11	-1.5
2,461,648	-		DDA3937_RS10910	0.11	+1.3
2,461,648	-		DDA3937_RS10910	0.11	+4.1
2,461,648	-		DDA3937_RS10910	0.11	-1.1
2,461,648	-		DDA3937_RS10910	0.11	-2.4
2,461,649	+		DDA3937_RS10910	0.11	+0.4
2,461,649	+		DDA3937_RS10910	0.11	+0.2
2,461,650	-		DDA3937_RS10910	0.11	+1.2
2,461,650	-		DDA3937_RS10910	0.11	-1.7
2,461,650	-		DDA3937_RS10910	0.11	-0.8
2,461,650	-		DDA3937_RS10910	0.11	-1.4
2,461,650	-		DDA3937_RS10910	0.11	+1.2
2,461,650	-		DDA3937_RS10910	0.11	-0.4
2,461,650	-		DDA3937_RS10910	0.11	-3.6
2,461,653	+		DDA3937_RS10910	0.12	-1.3
2,461,671	+		DDA3937_RS10910	0.15	-1.4
2,461,678	+		DDA3937_RS10910	0.17	-2.1
2,461,678	+		DDA3937_RS10910	0.17	-2.2
2,461,678	+		DDA3937_RS10910	0.17	+0.3
2,461,678	+		DDA3937_RS10910	0.17	+1.2
2,461,678	+		DDA3937_RS10910	0.17	-2.1
2,461,678	+				+3.6
2,461,678	+		DDA3937_RS10910	0.17	-0.4
2,461,678	+		DDA3937_RS10910	0.17	+0.4
2,461,679	-		DDA3937_RS10910	0.17	-1.7
2,461,679	-		DDA3937_RS10910	0.17	-0.9
2,461,680	+		DDA3937_RS10910	0.17	-0.1
2,461,680	+				+1.1
2,461,680	+		DDA3937_RS10910	0.17	-0.1
2,461,680	+		DDA3937_RS10910	0.17	-0.5
2,461,680	+		DDA3937_RS10910	0.17	-0.8
2,461,680	+		DDA3937_RS10910	0.17	-0.3
2,461,680	+		DDA3937_RS10910	0.17	-0.7
2,461,680	+		DDA3937_RS10910	0.17	-0.6
2,461,681	-		DDA3937_RS10910	0.17	-1.8
2,461,681	-		DDA3937_RS10910	0.17	+0.5
2,461,681	-		DDA3937_RS10910	0.17	-0.7
2,461,681	-		DDA3937_RS10910	0.17	+0.9
2,461,681	-		DDA3937_RS10910	0.17	-3.0
2,461,681	-		DDA3937_RS10910	0.17	-0.3
2,461,681	-		DDA3937_RS10910	0.17	+0.4
2,461,681	-		DDA3937_RS10910	0.17	+0.9
2,461,681	-		DDA3937_RS10910	0.17	-0.8
2,461,825	+		DDA3937_RS10910	0.46	-1.5
2,461,825	+		DDA3937_RS10910	0.46	+0.1
2,461,825	+		DDA3937_RS10910	0.46	-1.5
2,461,825	+		DDA3937_RS10910	0.46	-1.1
2,461,972	-		DDA3937_RS10910	0.75	+1.9
2,462,006	+		DDA3937_RS10910	0.81	+0.0
2,462,007	-		DDA3937_RS10910	0.82	+1.0
2,462,007	-		DDA3937_RS10910	0.82	-2.8
2,462,097	+				+0.0
2,462,098	-				-1.3
2,462,149	-				-0.8
2,462,163	+				+2.0
2,462,167	+				-0.1
2,462,167	+				-2.0
2,462,167	+				+0.3
2,462,167	+				-2.9
2,462,167	+				+2.5
2,462,167	+				-1.8
2,462,167	+				-1.4
2,462,167	+				+2.6
2,462,167	+				-2.8
2,462,168	-				+0.4
2,462,168	-				-1.7
2,462,168	-				+1.5
2,462,168	-				+0.4
2,462,168	-				-1.7
2,462,170	+				-2.0
2,462,170	+				-2.2
2,462,171	-				-1.7
2,462,171	-				-1.1
2,462,171	-				+1.1
2,462,171	-				-1.1
2,462,171	-				+1.6
2,462,202	+				-1.3
2,462,203	-				+1.7
2,462,203	-				+1.9
2,462,221	+				-0.8
2,462,277	+				+0.2
2,462,304	+				-4.0
2,462,318	-				-0.6
2,462,321	+				-1.5
2,462,322	-				-2.5
2,462,322	-				-1.3
2,462,322	-				+0.6
2,462,336	-				-1.7
2,462,350	+				-0.9
2,462,443	+				-3.3
2,462,505	+		DDA3937_RS10915	0.13	+0.4
2,462,506	-		DDA3937_RS10915	0.13	-0.3
2,462,578	+		DDA3937_RS10915	0.19	-2.1
2,462,644	-		DDA3937_RS10915	0.24	-3.1
2,462,647	+		DDA3937_RS10915	0.24	-2.0
2,462,648	-		DDA3937_RS10915	0.24	-0.6
2,462,648	-		DDA3937_RS10915	0.24	-1.5
2,462,678	+		DDA3937_RS10915	0.27	+1.6
2,462,678	+		DDA3937_RS10915	0.27	+0.0
2,462,678	+		DDA3937_RS10915	0.27	-2.2
2,462,678	+		DDA3937_RS10915	0.27	-0.0
2,462,678	+		DDA3937_RS10915	0.27	-2.9
2,462,678	+				+0.5
2,462,679	-		DDA3937_RS10915	0.27	+1.0
2,462,679	-		DDA3937_RS10915	0.27	+1.0
2,462,679	-		DDA3937_RS10915	0.27	-1.3
2,462,684	+		DDA3937_RS10915	0.27	-1.1
2,462,684	+		DDA3937_RS10915	0.27	-2.1
2,462,684	+		DDA3937_RS10915	0.27	+0.5
2,462,684	+		DDA3937_RS10915	0.27	+0.3
2,462,685	-		DDA3937_RS10915	0.27	-2.5
2,462,685	-				+0.9
2,462,685	-		DDA3937_RS10915	0.27	+1.0
2,462,685	-		DDA3937_RS10915	0.27	-2.3
2,462,685	-		DDA3937_RS10915	0.27	-1.1
2,462,747	-		DDA3937_RS10915	0.32	-0.5
2,462,747	-		DDA3937_RS10915	0.32	-1.1
2,462,750	+		DDA3937_RS10915	0.32	-0.5
2,462,758	+		DDA3937_RS10915	0.33	+0.9
2,462,798	+				-0.5
2,462,798	+		DDA3937_RS10915	0.36	-2.6
2,462,798	+		DDA3937_RS10915	0.36	-1.5
2,462,798	+		DDA3937_RS10915	0.36	+0.2
2,462,798	+				-0.1
2,462,798	+		DDA3937_RS10915	0.36	+1.3
2,462,798	+		DDA3937_RS10915	0.36	-3.2
2,462,799	-		DDA3937_RS10915	0.36	-0.1
2,462,799	-		DDA3937_RS10915	0.36	-2.2
2,462,816	+		DDA3937_RS10915	0.38	-1.5
2,462,817	-		DDA3937_RS10915	0.38	+1.5
2,462,817	-		DDA3937_RS10915	0.38	+1.3
2,462,818	+		DDA3937_RS10915	0.38	-2.0
2,462,818	+		DDA3937_RS10915	0.38	-2.0
2,462,819	-		DDA3937_RS10915	0.38	-2.0
2,462,819	-		DDA3937_RS10915	0.38	+1.0
2,462,891	+		DDA3937_RS10915	0.43	-0.8
2,462,891	+		DDA3937_RS10915	0.43	-0.5
2,462,891	+		DDA3937_RS10915	0.43	-2.7
2,462,891	+		DDA3937_RS10915	0.43	-0.1
2,462,891	+		DDA3937_RS10915	0.43	-1.7
2,462,891	+		DDA3937_RS10915	0.43	-1.9
2,462,892	-		DDA3937_RS10915	0.44	-1.5
2,462,906	+		DDA3937_RS10915	0.45	-2.1
2,462,906	+		DDA3937_RS10915	0.45	-0.5
2,462,906	+		DDA3937_RS10915	0.45	-1.2
2,462,906	+		DDA3937_RS10915	0.45	-0.1
2,462,906	+		DDA3937_RS10915	0.45	+2.3
2,462,906	+		DDA3937_RS10915	0.45	-1.1
2,462,906	+		DDA3937_RS10915	0.45	+4.3
2,462,906	+		DDA3937_RS10915	0.45	+0.6
2,462,906	+		DDA3937_RS10915	0.45	+0.7
2,462,906	+		DDA3937_RS10915	0.45	-0.4
2,462,907	-		DDA3937_RS10915	0.45	-0.7
2,462,907	-		DDA3937_RS10915	0.45	-0.1
2,462,907	-		DDA3937_RS10915	0.45	+0.7
2,462,907	-		DDA3937_RS10915	0.45	+0.5
2,462,907	-		DDA3937_RS10915	0.45	-2.1
2,462,907	-		DDA3937_RS10915	0.45	+1.8
2,462,907	-		DDA3937_RS10915	0.45	-1.3
2,462,907	-		DDA3937_RS10915	0.45	-0.8
2,462,907	-		DDA3937_RS10915	0.45	-0.6
2,462,907	-		DDA3937_RS10915	0.45	-0.8
2,462,907	-		DDA3937_RS10915	0.45	-3.1
2,462,908	+		DDA3937_RS10915	0.45	-1.5
2,462,908	+		DDA3937_RS10915	0.45	+1.2
2,462,908	+		DDA3937_RS10915	0.45	-3.0
2,462,909	-		DDA3937_RS10915	0.45	+0.3
2,462,909	-		DDA3937_RS10915	0.45	-0.5
2,463,083	+		DDA3937_RS10915	0.58	-1.7
2,463,084	-		DDA3937_RS10915	0.59	-1.1
2,463,156	+		DDA3937_RS10915	0.64	-1.1
2,463,156	+		DDA3937_RS10915	0.64	+0.6
2,463,157	-				-0.5
2,463,158	+		DDA3937_RS10915	0.64	-1.7
2,463,158	+		DDA3937_RS10915	0.64	-2.3
2,463,158	+		DDA3937_RS10915	0.64	-1.1
2,463,159	-		DDA3937_RS10915	0.64	-1.7
2,463,159	-		DDA3937_RS10915	0.64	+0.0
2,463,338	-		DDA3937_RS10915	0.78	-0.8
2,463,338	-				+0.5
2,463,338	-		DDA3937_RS10915	0.78	+0.2
2,463,397	+		DDA3937_RS10915	0.83	-2.4
2,463,397	+		DDA3937_RS10915	0.83	-2.2
2,463,398	-		DDA3937_RS10915	0.83	-0.1
2,463,708	+				-2.7
2,463,709	-				-3.3
2,463,709	-				+1.5
2,463,709	-				-0.4
2,463,782	-				-0.5
2,463,970	+		DDA3937_RS10920	0.13	+0.6
2,463,970	+		DDA3937_RS10920	0.13	-0.6
2,463,970	+		DDA3937_RS10920	0.13	-4.0
2,463,970	+		DDA3937_RS10920	0.13	-2.2
2,463,970	+		DDA3937_RS10920	0.13	+0.9
2,464,001	+		DDA3937_RS10920	0.15	-2.4
2,464,085	-		DDA3937_RS10920	0.19	+2.4
2,464,211	+		DDA3937_RS10920	0.25	+1.8
2,464,211	+		DDA3937_RS10920	0.25	-2.0
2,464,211	+		DDA3937_RS10920	0.25	-0.6
2,464,212	-		DDA3937_RS10920	0.26	+0.8
2,464,212	-		DDA3937_RS10920	0.26	+1.5
2,464,212	-		DDA3937_RS10920	0.26	-0.5
2,464,291	+		DDA3937_RS10920	0.30	-2.9
2,464,327	+		DDA3937_RS10920	0.31	+2.0
2,464,327	+		DDA3937_RS10920	0.31	+0.1
2,464,328	-		DDA3937_RS10920	0.31	-2.7
2,464,328	-		DDA3937_RS10920	0.31	+3.2
2,464,369	+		DDA3937_RS10920	0.33	-3.0
2,464,369	+		DDA3937_RS10920	0.33	+0.5
2,464,369	+		DDA3937_RS10920	0.33	-1.0
2,464,537	+		DDA3937_RS10920	0.42	-0.8
2,464,597	-		DDA3937_RS10920	0.45	-0.8