Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10660

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,399,402	+		DDA3937_RS10655	0.30	-1.9
2,399,403	-		DDA3937_RS10655	0.30	+1.0
2,399,534	-		DDA3937_RS10655	0.39	-0.1
2,399,534	-		DDA3937_RS10655	0.39	-1.1
2,399,534	-		DDA3937_RS10655	0.39	-0.6
2,399,707	-				-0.8
2,399,897	+		DDA3937_RS10655	0.65	-1.3
2,399,898	-		DDA3937_RS10655	0.65	-1.6
2,400,120	-		DDA3937_RS10655	0.81	+1.8
2,400,173	+		DDA3937_RS10655	0.85	-0.7
2,400,174	-		DDA3937_RS10655	0.85	-2.0
2,400,387	+				-1.4
2,400,387	+				+2.3
2,400,387	+				-2.4
2,400,387	+				-1.1
2,400,403	+				-3.4
2,400,404	-				-1.5
2,400,404	-				-2.9
2,400,411	+				-1.3
2,400,412	-				+1.5
2,400,426	+				+0.5
2,400,481	+				-0.5
2,400,482	-		DDA3937_RS10660	0.11	-2.5
2,400,502	-		DDA3937_RS10660	0.13	+0.0
2,400,535	-		DDA3937_RS10660	0.16	-0.8
2,400,554	-		DDA3937_RS10660	0.18	-0.5
2,400,596	+		DDA3937_RS10660	0.23	+1.2
2,400,654	+		DDA3937_RS10660	0.29	-2.6
2,400,654	+		DDA3937_RS10660	0.29	-1.5
2,400,655	-		DDA3937_RS10660	0.29	+1.3
2,400,655	-		DDA3937_RS10660	0.29	-2.1
2,400,655	-		DDA3937_RS10660	0.29	+0.7
2,400,655	-		DDA3937_RS10660	0.29	+3.4
2,400,664	-		DDA3937_RS10660	0.30	+0.4
2,400,704	-		DDA3937_RS10660	0.35	-1.3
2,400,845	-		DDA3937_RS10660	0.50	-1.5
2,400,871	-		DDA3937_RS10660	0.53	-1.6
2,400,878	+		DDA3937_RS10660	0.53	-0.9
2,400,878	+		DDA3937_RS10660	0.53	+0.6
2,400,879	-		DDA3937_RS10660	0.53	-1.1
2,400,879	-		DDA3937_RS10660	0.53	+0.6
2,400,879	-		DDA3937_RS10660	0.53	-1.5
2,400,926	+		DDA3937_RS10660	0.58	-2.8
2,400,927	-		DDA3937_RS10660	0.59	-0.5
2,400,927	-		DDA3937_RS10660	0.59	-1.5
2,400,972	+		DDA3937_RS10660	0.63	-2.2
2,400,973	-		DDA3937_RS10660	0.64	-1.4
2,400,991	+		DDA3937_RS10660	0.65	-1.6
2,401,020	+		DDA3937_RS10660	0.69	-1.5
2,401,021	-		DDA3937_RS10660	0.69	-1.7
2,401,076	+		DDA3937_RS10660	0.75	-2.9
2,401,077	-		DDA3937_RS10660	0.75	+1.3
2,401,199	+		DDA3937_RS10660	0.88	-1.3
2,401,200	-		DDA3937_RS10660	0.88	-1.1
2,401,300	+				-1.8
2,401,300	+				-2.1
2,401,301	-				+2.6
2,401,311	+				-2.5
2,401,311	+				+2.4
2,401,311	+				-1.3
2,401,312	-				+1.3
2,401,350	+				-2.7
2,401,350	+				-2.2
2,401,351	-				+0.0
2,401,361	-				-0.1
2,401,373	+				-0.2
2,401,374	-				-0.8
2,401,374	-				-0.8
2,401,374	-				-1.8
2,401,381	+				+0.4
2,401,381	+				+0.5
2,401,382	-				+0.5
2,401,382	-				+0.9
2,401,382	-				-1.2
2,401,382	-				-1.8
2,401,397	+				-1.2
2,401,397	+				-0.5
2,401,473	+				-1.5
2,401,474	-				-0.5
2,401,474	-				-0.5
2,401,474	-				-0.0
2,401,474	-				+3.3
2,401,474	-				-1.9
2,401,477	-				-1.7
2,401,477	-				-1.1
2,401,477	-				-1.5
2,401,477	-				+0.2
2,401,477	-				+0.5
2,401,516	+				+0.0
2,401,517	-				+0.5
2,401,517	-				-0.2
2,401,517	-				-0.1
2,401,517	-				-1.4
2,401,517	-				-0.0
2,401,615	-				-0.2
2,401,637	+		DDA3937_RS10665	0.12	-0.8
2,401,637	+		DDA3937_RS10665	0.12	-1.5
2,401,638	-		DDA3937_RS10665	0.12	+0.7
2,401,638	-		DDA3937_RS10665	0.12	+0.5
2,401,640	+		DDA3937_RS10665	0.12	-0.3
2,401,640	+		DDA3937_RS10665	0.12	-1.9
2,401,641	-		DDA3937_RS10665	0.12	+0.1
2,401,652	+		DDA3937_RS10665	0.13	-1.8
2,401,652	+		DDA3937_RS10665	0.13	-0.3
2,401,765	+		DDA3937_RS10665	0.22	-0.8
2,401,766	-		DDA3937_RS10665	0.22	-2.4
2,401,766	-		DDA3937_RS10665	0.22	+4.0
2,401,771	+		DDA3937_RS10665	0.22	-0.6
2,401,772	-		DDA3937_RS10665	0.22	+1.9
2,401,883	+		DDA3937_RS10665	0.31	-1.7
2,401,883	+		DDA3937_RS10665	0.31	-1.3
2,401,884	-		DDA3937_RS10665	0.31	+3.4
2,401,884	-		DDA3937_RS10665	0.31	-1.3
2,401,884	-		DDA3937_RS10665	0.31	+0.6
2,401,884	-		DDA3937_RS10665	0.31	-2.3
2,401,898	+		DDA3937_RS10665	0.32	+1.8
2,401,898	+		DDA3937_RS10665	0.32	-2.9
2,401,899	-		DDA3937_RS10665	0.33	+0.1
2,401,939	-		DDA3937_RS10665	0.36	-0.1
2,401,939	-		DDA3937_RS10665	0.36	-1.3
2,401,940	+		DDA3937_RS10665	0.36	-1.1
2,401,940	+		DDA3937_RS10665	0.36	+1.1
2,401,941	-		DDA3937_RS10665	0.36	+0.9
2,401,941	-		DDA3937_RS10665	0.36	+0.8
2,401,941	-		DDA3937_RS10665	0.36	-1.8
2,401,941	-		DDA3937_RS10665	0.36	-1.1
2,401,941	-		DDA3937_RS10665	0.36	-0.8
2,401,941	-		DDA3937_RS10665	0.36	-1.8
2,401,970	+		DDA3937_RS10665	0.38	+0.0
2,401,970	+		DDA3937_RS10665	0.38	+0.1
2,401,970	+		DDA3937_RS10665	0.38	-1.8
2,401,970	+		DDA3937_RS10665	0.38	-1.0
2,401,970	+		DDA3937_RS10665	0.38	-1.6
2,401,971	-		DDA3937_RS10665	0.38	-2.1
2,401,971	-		DDA3937_RS10665	0.38	-1.8
2,401,971	-		DDA3937_RS10665	0.38	-0.8
2,401,971	-		DDA3937_RS10665	0.38	-1.9
2,401,971	-		DDA3937_RS10665	0.38	-1.6
2,401,971	-		DDA3937_RS10665	0.38	-3.4
2,402,163	+		DDA3937_RS10665	0.54	-0.1
2,402,172	+		DDA3937_RS10665	0.54	-3.2
2,402,172	+		DDA3937_RS10665	0.54	+0.8
2,402,172	+		DDA3937_RS10665	0.54	-0.8
2,402,173	-		DDA3937_RS10665	0.54	-2.3
2,402,173	-		DDA3937_RS10665	0.54	-0.8
2,402,255	+		DDA3937_RS10665	0.61	-1.8
2,402,255	+		DDA3937_RS10665	0.61	-1.4
2,402,255	+		DDA3937_RS10665	0.61	-0.8
2,402,255	+		DDA3937_RS10665	0.61	+0.1
2,402,255	+		DDA3937_RS10665	0.61	-0.7
2,402,255	+		DDA3937_RS10665	0.61	-3.4
2,402,255	+		DDA3937_RS10665	0.61	+0.9
2,402,255	+		DDA3937_RS10665	0.61	-3.0
2,402,255	+		DDA3937_RS10665	0.61	-2.6
2,402,255	+		DDA3937_RS10665	0.61	+0.2
2,402,255	+		DDA3937_RS10665	0.61	-3.1
2,402,255	+		DDA3937_RS10665	0.61	-0.9
2,402,255	+		DDA3937_RS10665	0.61	-1.5
2,402,255	+		DDA3937_RS10665	0.61	-2.4
2,402,255	+		DDA3937_RS10665	0.61	+0.9
2,402,256	-		DDA3937_RS10665	0.61	-1.5
2,402,256	-		DDA3937_RS10665	0.61	-0.2
2,402,256	-		DDA3937_RS10665	0.61	-1.9
2,402,256	-		DDA3937_RS10665	0.61	-1.5
2,402,256	-		DDA3937_RS10665	0.61	-2.3
2,402,256	-		DDA3937_RS10665	0.61	-2.6
2,402,256	-		DDA3937_RS10665	0.61	-0.4
2,402,256	-		DDA3937_RS10665	0.61	-0.1
2,402,257	+		DDA3937_RS10665	0.61	-2.9
2,402,257	+		DDA3937_RS10665	0.61	-1.8
2,402,258	-		DDA3937_RS10665	0.61	+0.2
2,402,258	-		DDA3937_RS10665	0.61	-2.7
2,402,307	-		DDA3937_RS10665	0.65	-0.1
2,402,307	-		DDA3937_RS10665	0.65	-2.6
2,402,307	-		DDA3937_RS10665	0.65	-1.1
2,402,307	-		DDA3937_RS10665	0.65	-1.1