Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10645

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,395,033	+		DDA3937_RS10635	0.79	+1.1
2,395,034	-		DDA3937_RS10635	0.79	+0.5
2,395,083	+				+1.5
2,395,095	+		DDA3937_RS10635	0.86	-1.5
2,395,120	+		DDA3937_RS10635	0.88	-1.3
2,395,145	+				+1.5
2,395,250	-				-2.6
2,395,250	-				+1.3
2,395,271	-				-0.6
2,395,300	+				+4.4
2,395,300	+				+0.3
2,395,311	+				-1.8
2,395,312	-				-2.5
2,395,315	-				+1.4
2,395,320	+				-1.8
2,395,433	+		DDA3937_RS10640	0.19	-1.9
2,395,465	+		DDA3937_RS10640	0.26	+0.3
2,395,493	+		DDA3937_RS10640	0.32	-0.0
2,395,501	-		DDA3937_RS10640	0.34	-1.0
2,395,610	-		DDA3937_RS10640	0.57	-3.4
2,395,615	+		DDA3937_RS10640	0.58	-0.8
2,395,616	-		DDA3937_RS10640	0.58	-3.3
2,395,616	-		DDA3937_RS10640	0.58	-0.5
2,395,638	+		DDA3937_RS10640	0.63	+0.8
2,395,638	+		DDA3937_RS10640	0.63	-0.7
2,395,638	+		DDA3937_RS10640	0.63	+1.9
2,395,638	+		DDA3937_RS10640	0.63	+1.3
2,395,638	+		DDA3937_RS10640	0.63	+3.3
2,395,638	+		DDA3937_RS10640	0.63	+0.7
2,395,638	+		DDA3937_RS10640	0.63	+0.2
2,395,639	-		DDA3937_RS10640	0.63	-0.9
2,395,639	-		DDA3937_RS10640	0.63	-0.5
2,395,662	+		DDA3937_RS10640	0.68	-0.8
2,395,662	+		DDA3937_RS10640	0.68	+1.5
2,395,663	-		DDA3937_RS10640	0.69	-0.5
2,395,663	-		DDA3937_RS10640	0.69	-2.5
2,395,663	-		DDA3937_RS10640	0.69	-0.3
2,395,663	-		DDA3937_RS10640	0.69	-0.8
2,395,685	+		DDA3937_RS10640	0.73	-2.2
2,395,718	+				+0.5
2,395,740	-		DDA3937_RS10640	0.85	-1.9
2,395,757	+		DDA3937_RS10640	0.89	+0.1
2,395,792	+				+0.4
2,395,792	+				-0.8
2,395,792	+				-1.8
2,395,793	-				-2.0
2,395,793	-				-2.2
2,395,828	+				-2.8
2,395,828	+				+1.5
2,395,828	+				+0.1
2,395,828	+				+0.5
2,395,828	+				+0.7
2,395,828	+				+0.4
2,395,835	+				-2.8
2,395,857	-				+1.5
2,395,868	+				-0.6
2,395,868	+				+3.5
2,395,965	-				-3.0
2,396,104	+				+1.7
2,396,158	-				-1.0
2,396,458	+		DDA3937_RS10645	0.29	-1.2
2,396,459	-		DDA3937_RS10645	0.29	-3.2
2,396,537	-		DDA3937_RS10645	0.34	-2.4
2,396,537	-		DDA3937_RS10645	0.34	-2.0
2,396,537	-		DDA3937_RS10645	0.34	-2.9
2,396,568	+		DDA3937_RS10645	0.36	-0.9
2,396,902	+		DDA3937_RS10645	0.58	-2.0
2,397,002	+		DDA3937_RS10645	0.64	-0.2
2,397,114	+		DDA3937_RS10645	0.71	-1.8
2,397,115	-		DDA3937_RS10645	0.71	-1.0
2,397,115	-		DDA3937_RS10645	0.71	-1.9
2,397,122	-		DDA3937_RS10645	0.72	+0.5
2,397,206	+		DDA3937_RS10645	0.77	-1.0
2,397,206	+		DDA3937_RS10645	0.77	-1.0
2,397,207	-		DDA3937_RS10645	0.77	-1.4
2,397,207	-				-0.0
2,397,207	-		DDA3937_RS10645	0.77	+0.3
2,397,381	+		DDA3937_RS10645	0.88	+1.5
2,397,473	+				-2.0
2,397,473	+				-0.8
2,397,473	+				+1.1
2,397,473	+				+0.1
2,397,565	+				-2.4
2,397,565	+				-1.6
2,397,565	+				-1.9
2,397,565	+				-1.8
2,397,565	+				+0.5
2,397,565	+				-0.8
2,397,566	-				-2.6
2,397,566	-				+0.7
2,397,566	-				-0.8
2,397,566	-				+0.5
2,397,567	+				-1.6
2,397,567	+				-0.1
2,397,567	+				-0.2
2,397,568	-				-1.1
2,397,568	-				-0.2
2,397,569	+				-1.6
2,397,569	+				-2.2
2,397,569	+				-0.8
2,397,570	-				-1.6
2,397,570	-				-1.1
2,397,570	-				-1.8
2,397,570	-				-2.1
2,397,570	-				-2.0
2,397,612	+				-0.8
2,397,612	+				-0.8
2,397,613	-				-1.3
2,397,613	-				-0.1
2,397,613	-				-1.1
2,397,613	-				-0.4
2,397,616	+				+0.8
2,397,616	+				-0.8
2,397,616	+				-2.3
2,397,616	+				-1.3
2,397,616	+				+1.3
2,397,616	+				+1.9
2,397,616	+				+0.5
2,397,616	+				+0.1
2,397,617	-				+2.4
2,397,617	-				+0.9
2,397,617	-				-0.0
2,397,617	-				+0.8
2,397,622	+				+1.5
2,397,622	+				+0.5
2,397,622	+				+0.1
2,397,622	+				-0.7
2,397,622	+				-1.5
2,397,622	+				-0.8
2,397,622	+				+3.6
2,397,622	+				+1.1
2,397,622	+				-3.0
2,397,622	+				-1.4
2,397,622	+				-1.3
2,397,622	+				-2.3
2,397,622	+				-1.5
2,397,622	+				-0.5
2,397,623	-				-0.3
2,397,623	-				+1.6
2,397,623	-				+3.0
2,397,623	-				-0.8
2,397,623	-				-0.6
2,397,623	-				-1.5
2,397,623	-				+0.0
2,397,624	+				-2.1
2,397,624	+				+1.5
2,397,624	+				-0.8
2,397,625	-				+2.0
2,397,625	-				+1.4
2,397,625	-				-1.5
2,397,625	-				-1.1
2,397,625	-				+0.7
2,397,631	-				+0.9
2,397,643	+				-1.5
2,397,644	-				-0.4
2,397,780	-		DDA3937_RS10650	0.13	-1.1
2,397,821	+		DDA3937_RS10650	0.17	-3.4
2,397,826	+		DDA3937_RS10650	0.17	-2.4
2,397,826	+		DDA3937_RS10650	0.17	+4.0
2,397,827	-		DDA3937_RS10650	0.17	+3.5
2,397,827	-		DDA3937_RS10650	0.17	-0.5
2,397,962	+		DDA3937_RS10650	0.29	-2.4
2,397,962	+		DDA3937_RS10650	0.29	+2.9
2,397,962	+		DDA3937_RS10650	0.29	+5.4
2,397,962	+		DDA3937_RS10650	0.29	-3.5
2,397,962	+		DDA3937_RS10650	0.29	-3.1
2,397,962	+		DDA3937_RS10650	0.29	-0.8
2,397,963	-		DDA3937_RS10650	0.29	-0.5
2,397,963	-		DDA3937_RS10650	0.29	-1.6
2,397,963	-		DDA3937_RS10650	0.29	+4.2
2,397,963	-		DDA3937_RS10650	0.29	+0.8
2,397,963	-		DDA3937_RS10650	0.29	-4.2
2,397,963	-		DDA3937_RS10650	0.29	-1.6
2,397,964	+		DDA3937_RS10650	0.29	-1.1
2,397,964	+		DDA3937_RS10650	0.29	-1.3
2,397,964	+		DDA3937_RS10650	0.29	+1.3
2,397,964	+		DDA3937_RS10650	0.29	-1.3
2,397,964	+		DDA3937_RS10650	0.29	-0.7
2,397,964	+		DDA3937_RS10650	0.29	+1.7
2,397,964	+		DDA3937_RS10650	0.29	-0.1
2,397,964	+		DDA3937_RS10650	0.29	-1.6
2,397,965	-		DDA3937_RS10650	0.29	-0.5
2,397,965	-		DDA3937_RS10650	0.29	-0.3
2,397,965	-		DDA3937_RS10650	0.29	-1.3
2,397,965	-		DDA3937_RS10650	0.29	+3.4
2,397,965	-		DDA3937_RS10650	0.29	-1.5
2,397,965	-		DDA3937_RS10650	0.29	-1.1
2,398,037	-		DDA3937_RS10650	0.35	-1.1
2,398,057	+		DDA3937_RS10650	0.37	+0.8
2,398,136	-		DDA3937_RS10650	0.43	-1.1
2,398,148	+		DDA3937_RS10650	0.44	-0.5
2,398,381	+		DDA3937_RS10650	0.64	-1.6
2,398,429	+		DDA3937_RS10650	0.68	-1.0
2,398,430	-		DDA3937_RS10650	0.68	-2.6
2,398,430	-		DDA3937_RS10650	0.68	+3.1
2,398,430	-				-0.1