Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10400

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,342,938	+		DDA3937_RS10395	0.14	+4.5
2,342,938	+		DDA3937_RS10395	0.14	+3.9
2,342,938	+		DDA3937_RS10395	0.14	+3.6
2,342,939	-		DDA3937_RS10395	0.14	+3.0
2,342,939	-		DDA3937_RS10395	0.14	+4.0
2,342,939	-		DDA3937_RS10395	0.14	+2.5
2,343,036	+		DDA3937_RS10395	0.23	+3.1
2,343,036	+		DDA3937_RS10395	0.23	+4.2
2,343,036	+		DDA3937_RS10395	0.23	+5.2
2,343,037	-		DDA3937_RS10395	0.24	+3.4
2,343,037	-		DDA3937_RS10395	0.24	+3.5
2,343,039	+		DDA3937_RS10395	0.24	+4.1
2,343,039	+		DDA3937_RS10395	0.24	+4.2
2,343,039	+		DDA3937_RS10395	0.24	+4.5
2,343,040	-		DDA3937_RS10395	0.24	+3.3
2,343,040	-		DDA3937_RS10395	0.24	+3.5
2,343,040	-		DDA3937_RS10395	0.24	+3.3
2,343,040	-		DDA3937_RS10395	0.24	+3.9
2,343,040	-		DDA3937_RS10395	0.24	+3.1
2,343,040	-		DDA3937_RS10395	0.24	+3.3
2,343,040	-		DDA3937_RS10395	0.24	+4.2
2,343,040	-		DDA3937_RS10395	0.24	+3.4
2,343,092	+		DDA3937_RS10395	0.29	+4.3
2,343,092	+		DDA3937_RS10395	0.29	+4.9
2,343,092	+		DDA3937_RS10395	0.29	+4.7
2,343,092	+		DDA3937_RS10395	0.29	+4.5
2,343,092	+		DDA3937_RS10395	0.29	+4.1
2,343,092	+		DDA3937_RS10395	0.29	+4.2
2,343,092	+		DDA3937_RS10395	0.29	+4.4
2,343,092	+		DDA3937_RS10395	0.29	+3.9
2,343,092	+		DDA3937_RS10395	0.29	+4.3
2,343,093	-		DDA3937_RS10395	0.29	+3.6
2,343,093	-		DDA3937_RS10395	0.29	+3.2
2,343,093	-		DDA3937_RS10395	0.29	+2.8
2,343,093	-		DDA3937_RS10395	0.29	+3.4
2,343,093	-		DDA3937_RS10395	0.29	+3.4
2,343,165	+		DDA3937_RS10395	0.36	+4.1
2,343,183	+		DDA3937_RS10395	0.38	+4.1
2,343,183	+		DDA3937_RS10395	0.38	+3.9
2,343,183	+		DDA3937_RS10395	0.38	+4.3
2,343,183	+		DDA3937_RS10395	0.38	+4.4
2,343,183	+		DDA3937_RS10395	0.38	+4.3
2,343,184	-		DDA3937_RS10395	0.38	+2.9
2,343,184	-		DDA3937_RS10395	0.38	+2.7
2,343,184	-		DDA3937_RS10395	0.38	-0.8
2,343,187	+		DDA3937_RS10395	0.39	+4.1
2,343,187	+		DDA3937_RS10395	0.39	+4.0
2,343,187	+		DDA3937_RS10395	0.39	+4.0
2,343,187	+		DDA3937_RS10395	0.39	+4.2
2,343,187	+		DDA3937_RS10395	0.39	+3.6
2,343,187	+		DDA3937_RS10395	0.39	+4.3
2,343,187	+		DDA3937_RS10395	0.39	+4.6
2,343,188	-		DDA3937_RS10395	0.39	+3.4
2,343,188	-		DDA3937_RS10395	0.39	+3.5
2,343,278	-		DDA3937_RS10395	0.48	+4.6
2,343,312	+		DDA3937_RS10395	0.51	+4.6
2,343,425	+		DDA3937_RS10395	0.62	+2.4
2,343,425	+		DDA3937_RS10395	0.62	+4.4
2,343,425	+		DDA3937_RS10395	0.62	+4.1
2,343,425	+		DDA3937_RS10395	0.62	+4.9
2,343,426	-		DDA3937_RS10395	0.62	+3.0
2,343,426	-		DDA3937_RS10395	0.62	+3.2
2,343,426	-		DDA3937_RS10395	0.62	+2.8
2,343,426	-		DDA3937_RS10395	0.62	+3.1
2,343,426	-		DDA3937_RS10395	0.62	+2.3
2,343,426	-		DDA3937_RS10395	0.62	+3.0
2,343,426	-		DDA3937_RS10395	0.62	+3.4
2,343,511	+		DDA3937_RS10395	0.71	+4.0
2,343,511	+		DDA3937_RS10395	0.71	+4.1
2,343,511	+		DDA3937_RS10395	0.71	+4.3
2,343,511	+		DDA3937_RS10395	0.71	+4.6
2,343,511	+		DDA3937_RS10395	0.71	+4.1
2,343,511	+		DDA3937_RS10395	0.71	+4.7
2,343,511	+		DDA3937_RS10395	0.71	+4.4
2,343,511	+		DDA3937_RS10395	0.71	+4.2
2,343,511	+		DDA3937_RS10395	0.71	+4.5
2,343,511	+		DDA3937_RS10395	0.71	+4.4
2,343,511	+		DDA3937_RS10395	0.71	+4.5
2,343,511	+		DDA3937_RS10395	0.71	+4.6
2,343,511	+		DDA3937_RS10395	0.71	+3.7
2,343,512	-		DDA3937_RS10395	0.71	+3.4
2,343,512	-		DDA3937_RS10395	0.71	+3.1
2,343,512	-		DDA3937_RS10395	0.71	+3.1
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+2.6
2,343,512	-		DDA3937_RS10395	0.71	+4.0
2,343,512	-		DDA3937_RS10395	0.71	+3.5
2,343,512	-		DDA3937_RS10395	0.71	+3.4
2,343,512	-		DDA3937_RS10395	0.71	+3.2
2,343,512	-		DDA3937_RS10395	0.71	+3.3
2,343,512	-		DDA3937_RS10395	0.71	+3.2
2,343,512	-		DDA3937_RS10395	0.71	+4.4
2,343,512	-		DDA3937_RS10395	0.71	+3.4
2,343,512	-		DDA3937_RS10395	0.71	+3.4
2,343,512	-		DDA3937_RS10395	0.71	+3.1
2,343,512	-		DDA3937_RS10395	0.71	+2.8
2,343,512	-		DDA3937_RS10395	0.71	+4.4
2,343,541	+		DDA3937_RS10395	0.74	+3.4
2,343,541	+		DDA3937_RS10395	0.74	+4.7
2,343,541	+		DDA3937_RS10395	0.74	+4.0
2,343,541	+		DDA3937_RS10395	0.74	+4.3
2,343,541	+		DDA3937_RS10395	0.74	+4.6
2,343,541	+		DDA3937_RS10395	0.74	+5.2
2,343,541	+		DDA3937_RS10395	0.74	+4.1
2,343,542	-		DDA3937_RS10395	0.74	+4.5
2,343,542	-		DDA3937_RS10395	0.74	+3.6
2,343,542	-		DDA3937_RS10395	0.74	+4.3
2,343,542	-		DDA3937_RS10395	0.74	+3.8
2,343,553	+		DDA3937_RS10395	0.75	+3.9
2,343,553	+		DDA3937_RS10395	0.75	+3.9
2,343,553	+		DDA3937_RS10395	0.75	+4.2
2,343,554	-		DDA3937_RS10395	0.75	+2.6
2,343,554	-		DDA3937_RS10395	0.75	+1.1
2,343,554	-		DDA3937_RS10395	0.75	+1.0
2,343,554	-		DDA3937_RS10395	0.75	+2.7
2,343,574	+		DDA3937_RS10395	0.77	+4.1
2,343,574	+		DDA3937_RS10395	0.77	+4.2
2,343,575	-		DDA3937_RS10395	0.77	+3.2
2,343,575	-		DDA3937_RS10395	0.77	+4.0
2,343,575	-		DDA3937_RS10395	0.77	+3.4
2,343,576	+		DDA3937_RS10395	0.77	+3.8
2,343,576	+		DDA3937_RS10395	0.77	+4.4
2,343,576	+		DDA3937_RS10395	0.77	+4.5
2,343,576	+		DDA3937_RS10395	0.77	+4.3
2,343,577	-		DDA3937_RS10395	0.77	+3.4
2,343,577	-		DDA3937_RS10395	0.77	+3.6
2,343,577	-		DDA3937_RS10395	0.77	+2.2
2,343,577	-		DDA3937_RS10395	0.77	+3.5
2,343,627	+		DDA3937_RS10395	0.82	+4.0
2,343,627	+		DDA3937_RS10395	0.82	+2.6
2,343,627	+		DDA3937_RS10395	0.82	+4.6
2,343,627	+		DDA3937_RS10395	0.82	+5.4
2,343,628	-		DDA3937_RS10395	0.82	+2.9
2,343,628	-		DDA3937_RS10395	0.82	+2.9
2,343,628	-		DDA3937_RS10395	0.82	+3.4
2,343,628	-		DDA3937_RS10395	0.82	+3.4
2,343,628	-		DDA3937_RS10395	0.82	+3.5
2,343,692	+		DDA3937_RS10395	0.89	+4.2
2,343,692	+		DDA3937_RS10395	0.89	+4.5
2,343,692	+		DDA3937_RS10395	0.89	+4.1
2,343,692	+		DDA3937_RS10395	0.89	+3.9
2,343,692	+		DDA3937_RS10395	0.89	+4.1
2,343,692	+		DDA3937_RS10395	0.89	+4.6
2,343,693	-		DDA3937_RS10395	0.89	+3.1
2,343,693	-		DDA3937_RS10395	0.89	+3.0
2,343,693	-		DDA3937_RS10395	0.89	+3.2
2,343,693	-		DDA3937_RS10395	0.89	+5.5
2,343,693	-		DDA3937_RS10395	0.89	+3.0
2,343,693	-		DDA3937_RS10395	0.89	+2.9
2,343,693	-		DDA3937_RS10395	0.89	+4.7
2,343,821	+				+0.7
2,343,821	+				+3.0
2,343,822	-				-1.8
2,343,835	+				+4.6
2,343,869	+				+0.6
2,343,892	-				-0.9
2,343,979	-		DDA3937_RS10400	0.21	-2.7
2,343,979	-		DDA3937_RS10400	0.21	-1.0
2,344,021	+		DDA3937_RS10400	0.34	-1.8
2,344,021	+		DDA3937_RS10400	0.34	-2.6
2,344,137	+		DDA3937_RS10400	0.70	-1.2
2,344,138	-		DDA3937_RS10400	0.70	+0.1
2,344,185	-		DDA3937_RS10400	0.85	-3.1
2,344,185	-		DDA3937_RS10400	0.85	-0.6
2,344,185	-		DDA3937_RS10400	0.85	-1.0
2,344,226	-				-1.9
2,344,226	-				+2.6
2,344,233	+				-0.4
2,344,234	-				-0.8
2,344,234	-				-1.6
2,344,266	+				-0.8
2,344,266	+				-1.9
2,344,267	-				+1.8
2,344,267	-				-4.1
2,344,267	-				-0.3
2,344,267	-				-3.4
2,344,267	-				-0.7
2,344,922	+		DDA3937_RS10405	0.43	+0.8