Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10190

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,297,194	+		DDA3937_RS10185	0.11	-1.2
2,297,195	-		DDA3937_RS10185	0.11	-1.4
2,297,280	+		DDA3937_RS10185	0.19	+2.9
2,297,280	+		DDA3937_RS10185	0.19	+0.4
2,297,281	-				-0.4
2,297,281	-		DDA3937_RS10185	0.19	+0.5
2,297,284	+		DDA3937_RS10185	0.19	-1.0
2,297,285	-		DDA3937_RS10185	0.19	-2.0
2,297,285	-		DDA3937_RS10185	0.19	+0.6
2,297,306	+		DDA3937_RS10185	0.21	-2.0
2,297,314	+		DDA3937_RS10185	0.22	-0.1
2,297,314	+		DDA3937_RS10185	0.22	-1.4
2,297,314	+		DDA3937_RS10185	0.22	-3.3
2,297,326	+		DDA3937_RS10185	0.23	+0.6
2,297,326	+		DDA3937_RS10185	0.23	-2.1
2,297,385	+		DDA3937_RS10185	0.29	-1.4
2,297,408	-		DDA3937_RS10185	0.31	+0.5
2,297,498	+		DDA3937_RS10185	0.39	-3.2
2,297,498	+		DDA3937_RS10185	0.39	-1.0
2,297,498	+		DDA3937_RS10185	0.39	-2.2
2,297,499	-		DDA3937_RS10185	0.39	-0.4
2,297,499	-		DDA3937_RS10185	0.39	+2.3
2,297,551	+		DDA3937_RS10185	0.44	-1.2
2,297,552	-		DDA3937_RS10185	0.44	+1.6
2,297,552	-		DDA3937_RS10185	0.44	-1.7
2,297,629	-		DDA3937_RS10185	0.51	-2.9
2,297,640	+		DDA3937_RS10185	0.52	+0.7
2,297,641	-		DDA3937_RS10185	0.52	-1.6
2,297,725	+		DDA3937_RS10185	0.60	-1.3
2,297,725	+		DDA3937_RS10185	0.60	-0.3
2,297,726	-		DDA3937_RS10185	0.60	-0.7
2,297,726	-		DDA3937_RS10185	0.60	-1.0
2,297,726	-		DDA3937_RS10185	0.60	-2.1
2,297,773	+		DDA3937_RS10185	0.64	+0.3
2,297,773	+		DDA3937_RS10185	0.64	+0.5
2,297,774	-		DDA3937_RS10185	0.64	-3.5
2,297,776	+		DDA3937_RS10185	0.64	-1.2
2,297,776	+		DDA3937_RS10185	0.64	-0.7
2,297,776	+		DDA3937_RS10185	0.64	-2.7
2,297,776	+		DDA3937_RS10185	0.64	-2.3
2,297,776	+		DDA3937_RS10185	0.64	+0.1
2,297,830	+		DDA3937_RS10185	0.69	+0.6
2,297,830	+		DDA3937_RS10185	0.69	+0.9
2,297,831	-		DDA3937_RS10185	0.69	-0.1
2,297,831	-		DDA3937_RS10185	0.69	-1.1
2,297,870	-		DDA3937_RS10185	0.73	-0.4
2,297,895	+		DDA3937_RS10185	0.75	+1.3
2,297,895	+		DDA3937_RS10185	0.75	-0.4
2,297,941	+		DDA3937_RS10185	0.79	-1.3
2,297,941	+				-0.0
2,297,942	-		DDA3937_RS10185	0.79	-1.7
2,297,942	-		DDA3937_RS10185	0.79	+0.4
2,297,966	-		DDA3937_RS10185	0.82	-0.0
2,297,973	+		DDA3937_RS10185	0.82	-2.0
2,297,974	-		DDA3937_RS10185	0.82	-0.2
2,297,974	-		DDA3937_RS10185	0.82	-1.0
2,297,978	-		DDA3937_RS10185	0.83	-1.2
2,297,978	-		DDA3937_RS10185	0.83	-1.0
2,298,407	+		DDA3937_RS10190	0.22	-0.7
2,298,407	+		DDA3937_RS10190	0.22	-1.2
2,298,407	+		DDA3937_RS10190	0.22	+0.6
2,298,408	-		DDA3937_RS10190	0.22	+0.5
2,298,408	-		DDA3937_RS10190	0.22	+1.6
2,298,408	-		DDA3937_RS10190	0.22	+1.8
2,298,409	+		DDA3937_RS10190	0.22	+0.2
2,298,409	+		DDA3937_RS10190	0.22	-1.6
2,298,409	+		DDA3937_RS10190	0.22	+1.2
2,298,410	-		DDA3937_RS10190	0.22	-1.0
2,298,410	-		DDA3937_RS10190	0.22	+1.0
2,298,433	-		DDA3937_RS10190	0.25	-1.4
2,298,588	+		DDA3937_RS10190	0.38	-2.1
2,298,592	+				+4.9
2,298,592	+		DDA3937_RS10190	0.39	-0.4
2,298,592	+		DDA3937_RS10190	0.39	+0.3
2,298,593	-		DDA3937_RS10190	0.39	-0.1
2,298,593	-		DDA3937_RS10190	0.39	-1.8
2,298,593	-		DDA3937_RS10190	0.39	-2.5
2,298,593	-		DDA3937_RS10190	0.39	-3.1
2,298,593	-		DDA3937_RS10190	0.39	+0.2
2,298,714	-		DDA3937_RS10190	0.50	-0.3
2,298,879	+		DDA3937_RS10190	0.65	-0.4
2,298,879	+		DDA3937_RS10190	0.65	+0.7
2,298,880	-		DDA3937_RS10190	0.65	-1.2
2,298,880	-		DDA3937_RS10190	0.65	-0.1
2,298,929	-		DDA3937_RS10190	0.69	-2.3
2,299,003	-		DDA3937_RS10190	0.76	+1.3
2,299,005	+		DDA3937_RS10190	0.76	+3.9
2,299,006	-		DDA3937_RS10190	0.76	+0.6
2,299,006	-		DDA3937_RS10190	0.76	+0.2
2,299,006	-		DDA3937_RS10190	0.76	-0.8
2,299,048	-		DDA3937_RS10190	0.80	-2.8
2,299,069	-		DDA3937_RS10190	0.82	-0.2
2,299,069	-		DDA3937_RS10190	0.82	-2.0
2,299,069	-		DDA3937_RS10190	0.82	+1.6
2,299,219	+				-0.3
2,299,219	+				+1.6
2,299,330	-				+0.0
2,299,331	+				+0.3
2,299,331	+				-2.5
2,299,331	+				-0.0
2,299,331	+				-1.0
2,299,331	+				-3.6
2,299,332	-				-1.2
2,299,332	-				-2.5
2,299,344	-				-1.9
2,299,498	+				+2.2
2,299,498	+		DDA3937_RS10195	0.21	+2.8
2,299,498	+		DDA3937_RS10195	0.21	-2.0
2,299,499	-		DDA3937_RS10195	0.21	+0.3
2,299,499	-		DDA3937_RS10195	0.21	-0.0
2,299,499	-		DDA3937_RS10195	0.21	+0.0
2,299,565	+		DDA3937_RS10195	0.26	-1.8
2,299,566	-		DDA3937_RS10195	0.27	+0.1
2,299,613	+		DDA3937_RS10195	0.31	-0.4
2,299,614	-		DDA3937_RS10195	0.31	+1.6
2,299,614	-		DDA3937_RS10195	0.31	-1.0
2,299,683	+		DDA3937_RS10195	0.37	+1.0
2,299,684	-		DDA3937_RS10195	0.37	+1.6
2,299,774	+		DDA3937_RS10195	0.45	+1.6
2,299,774	+		DDA3937_RS10195	0.45	-1.8
2,299,774	+		DDA3937_RS10195	0.45	+0.2
2,299,774	+		DDA3937_RS10195	0.45	-1.6
2,299,774	+		DDA3937_RS10195	0.45	-1.9
2,299,774	+		DDA3937_RS10195	0.45	-1.2
2,299,774	+		DDA3937_RS10195	0.45	+2.1
2,299,774	+		DDA3937_RS10195	0.45	+0.8
2,299,775	-		DDA3937_RS10195	0.45	+1.0
2,299,775	-		DDA3937_RS10195	0.45	-2.0
2,299,775	-		DDA3937_RS10195	0.45	+1.0
2,299,775	-		DDA3937_RS10195	0.45	-0.0
2,299,780	+		DDA3937_RS10195	0.46	-2.3
2,299,780	+		DDA3937_RS10195	0.46	-0.4
2,299,780	+		DDA3937_RS10195	0.46	-0.0
2,299,780	+				-1.0
2,299,781	-		DDA3937_RS10195	0.46	-1.0
2,299,809	+		DDA3937_RS10195	0.48	-1.7
2,299,850	-		DDA3937_RS10195	0.52	-0.6
2,299,886	+		DDA3937_RS10195	0.55	-1.4
2,299,887	-		DDA3937_RS10195	0.55	+0.2
2,299,887	-		DDA3937_RS10195	0.55	-2.0
2,299,938	+		DDA3937_RS10195	0.60	-2.3
2,299,938	+		DDA3937_RS10195	0.60	-0.0
2,299,962	-		DDA3937_RS10195	0.62	+0.6
2,299,962	-		DDA3937_RS10195	0.62	+1.6
2,299,992	+		DDA3937_RS10195	0.64	-1.2
2,299,993	-				-0.8
2,299,993	-		DDA3937_RS10195	0.65	-0.0
2,299,993	-		DDA3937_RS10195	0.65	-0.3
2,299,993	-		DDA3937_RS10195	0.65	-1.6
2,299,993	-		DDA3937_RS10195	0.65	-0.1
2,300,091	+		DDA3937_RS10195	0.73	-2.3
2,300,091	+		DDA3937_RS10195	0.73	-2.2
2,300,092	-		DDA3937_RS10195	0.73	-3.4
2,300,092	-		DDA3937_RS10195	0.73	-2.4
2,300,093	+		DDA3937_RS10195	0.73	+0.4
2,300,093	+		DDA3937_RS10195	0.73	-0.6
2,300,093	+		DDA3937_RS10195	0.73	+0.7
2,300,093	+		DDA3937_RS10195	0.73	-0.2
2,300,093	+		DDA3937_RS10195	0.73	+2.1
2,300,093	+		DDA3937_RS10195	0.73	-1.2
2,300,094	-		DDA3937_RS10195	0.74	-3.5
2,300,094	-				+0.6
2,300,094	-		DDA3937_RS10195	0.74	+1.8
2,300,149	+		DDA3937_RS10195	0.78	-2.2
2,300,149	+		DDA3937_RS10195	0.78	+0.7
2,300,150	-		DDA3937_RS10195	0.78	-1.3
2,300,205	+		DDA3937_RS10195	0.83	-1.8
2,300,205	+		DDA3937_RS10195	0.83	+1.6
2,300,205	+		DDA3937_RS10195	0.83	-1.9
2,300,205	+		DDA3937_RS10195	0.83	+0.5
2,300,205	+		DDA3937_RS10195	0.83	+0.9
2,300,205	+		DDA3937_RS10195	0.83	+1.9
2,300,205	+		DDA3937_RS10195	0.83	-0.1
2,300,205	+		DDA3937_RS10195	0.83	-0.8
2,300,206	-		DDA3937_RS10195	0.83	+2.5
2,300,206	-		DDA3937_RS10195	0.83	-1.5
2,300,206	-		DDA3937_RS10195	0.83	-1.0
2,300,206	-		DDA3937_RS10195	0.83	-0.4
2,300,212	+		DDA3937_RS10195	0.84	-1.5
2,300,212	+		DDA3937_RS10195	0.84	+1.6
2,300,212	+		DDA3937_RS10195	0.84	-2.3
2,300,212	+		DDA3937_RS10195	0.84	-2.1
2,300,212	+		DDA3937_RS10195	0.84	-1.6
2,300,212	+		DDA3937_RS10195	0.84	-2.3
2,300,212	+		DDA3937_RS10195	0.84	+1.6
2,300,213	-		DDA3937_RS10195	0.84	+0.3
2,300,213	-		DDA3937_RS10195	0.84	+1.1
2,300,213	-		DDA3937_RS10195	0.84	-0.7
2,300,213	-		DDA3937_RS10195	0.84	-2.7
2,300,213	-		DDA3937_RS10195	0.84	-1.4
2,300,214	+		DDA3937_RS10195	0.84	+1.5
2,300,214	+		DDA3937_RS10195	0.84	-0.5
2,300,214	+		DDA3937_RS10195	0.84	-0.0
2,300,267	+		DDA3937_RS10195	0.89	+0.7