Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10170

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS10165 and DDA3937_RS10170 are separated by 287 nucleotidesDDA3937_RS10170 and DDA3937_RS10175 are separated by 551 nucleotides DDA3937_RS10165: DDA3937_RS10165 - copper homeostasis membrane protein CopD, at 2,292,586 to 2,293,464 _RS10165 DDA3937_RS10170: DDA3937_RS10170 - non-heme ferritin, at 2,293,752 to 2,294,261 _RS10170 DDA3937_RS10175: DDA3937_RS10175 - DNA/RNA non-specific endonuclease, at 2,294,813 to 2,295,553 _RS10175 Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2292.771 kb on - strand, within DDA3937_RS10165at 2292.771 kb on - strand, within DDA3937_RS10165at 2292.810 kb on + strand, within DDA3937_RS10165at 2292.811 kb on - strand, within DDA3937_RS10165at 2292.811 kb on - strand, within DDA3937_RS10165at 2292.811 kb on - strand, within DDA3937_RS10165at 2292.885 kb on - strand, within DDA3937_RS10165at 2292.885 kb on - strand, within DDA3937_RS10165at 2292.959 kb on + strand, within DDA3937_RS10165at 2292.960 kb on - strand, within DDA3937_RS10165at 2292.969 kb on - strand, within DDA3937_RS10165at 2292.969 kb on - strand, within DDA3937_RS10165at 2293.023 kb on - strand, within DDA3937_RS10165at 2293.141 kb on - strand, within DDA3937_RS10165at 2293.215 kb on + strand, within DDA3937_RS10165at 2293.215 kb on + strand, within DDA3937_RS10165at 2293.215 kb on + strand, within DDA3937_RS10165at 2293.216 kb on - strand, within DDA3937_RS10165at 2293.216 kb on - strand, within DDA3937_RS10165at 2293.216 kb on - strand, within DDA3937_RS10165at 2293.216 kb on - strand, within DDA3937_RS10165at 2293.499 kb on + strandat 2293.500 kb on - strandat 2293.521 kb on + strandat 2293.522 kb on - strandat 2293.534 kb on + strandat 2293.534 kb on + strandat 2293.535 kb on - strandat 2293.536 kb on + strandat 2293.536 kb on + strandat 2293.536 kb on + strandat 2293.537 kb on - strandat 2293.543 kb on + strandat 2293.568 kb on + strandat 2293.665 kb on - strandat 2293.741 kb on - strandat 2293.929 kb on + strand, within DDA3937_RS10170at 2294.092 kb on - strand, within DDA3937_RS10170at 2294.096 kb on + strand, within DDA3937_RS10170at 2294.096 kb on + strand, within DDA3937_RS10170at 2294.118 kb on + strand, within DDA3937_RS10170at 2294.118 kb on + strand, within DDA3937_RS10170at 2294.118 kb on + strand, within DDA3937_RS10170at 2294.118 kb on + strand, within DDA3937_RS10170at 2294.159 kb on + strand, within DDA3937_RS10170at 2294.159 kb on + strand, within DDA3937_RS10170at 2294.263 kb on - strandat 2294.336 kb on - strandat 2294.357 kb on - strandat 2294.361 kb on + strandat 2294.361 kb on + strandat 2294.361 kb on + strandat 2294.361 kb on + strandat 2294.362 kb on - strandat 2294.363 kb on + strandat 2294.364 kb on - strandat 2294.364 kb on - strandat 2294.391 kb on - strandat 2294.391 kb on - strandat 2294.391 kb on - strandat 2294.392 kb on + strandat 2294.475 kb on - strandat 2294.510 kb on - strandat 2294.510 kb on - strandat 2294.523 kb on + strandat 2294.523 kb on + strandat 2294.523 kb on + strandat 2294.550 kb on - strandat 2294.550 kb on - strandat 2294.550 kb on - strandat 2294.573 kb on - strandat 2294.576 kb on - strandat 2294.606 kb on + strandat 2294.606 kb on + strandat 2294.607 kb on - strandat 2294.607 kb on - strandat 2294.607 kb on - strandat 2294.695 kb on - strandat 2294.773 kb on + strandat 2294.841 kb on + strandat 2294.841 kb on + strandat 2294.841 kb on + strandat 2294.842 kb on - strandat 2294.850 kb on + strandat 2294.933 kb on - strand, within DDA3937_RS10175at 2294.978 kb on + strand, within DDA3937_RS10175at 2294.979 kb on - strand, within DDA3937_RS10175at 2294.980 kb on + strand, within DDA3937_RS10175at 2294.980 kb on + strand, within DDA3937_RS10175at 2294.981 kb on - strand, within DDA3937_RS10175at 2294.985 kb on - strand, within DDA3937_RS10175at 2295.004 kb on - strand, within DDA3937_RS10175at 2295.053 kb on - strand, within DDA3937_RS10175at 2295.122 kb on + strand, within DDA3937_RS10175at 2295.123 kb on - strand, within DDA3937_RS10175at 2295.151 kb on + strand, within DDA3937_RS10175at 2295.151 kb on + strandat 2295.169 kb on + strand, within DDA3937_RS10175at 2295.169 kb on + strand, within DDA3937_RS10175at 2295.170 kb on - strand, within DDA3937_RS10175at 2295.170 kb on - strand, within DDA3937_RS10175at 2295.170 kb on - strand, within DDA3937_RS10175

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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2,292,771 - DDA3937_RS10165 0.21 +1.0
2,292,771 - DDA3937_RS10165 0.21 +0.3
2,292,810 + DDA3937_RS10165 0.25 -0.7
2,292,811 - DDA3937_RS10165 0.26 +1.1
2,292,811 - DDA3937_RS10165 0.26 -1.2
2,292,811 - DDA3937_RS10165 0.26 -1.0
2,292,885 - DDA3937_RS10165 0.34 +0.6
2,292,885 - DDA3937_RS10165 0.34 -2.9
2,292,959 + DDA3937_RS10165 0.42 +0.6
2,292,960 - DDA3937_RS10165 0.43 -0.3
2,292,969 - DDA3937_RS10165 0.44 +1.1
2,292,969 - DDA3937_RS10165 0.44 +0.0
2,293,023 - DDA3937_RS10165 0.50 -1.0
2,293,141 - DDA3937_RS10165 0.63 -2.4
2,293,215 + DDA3937_RS10165 0.72 -2.2
2,293,215 + DDA3937_RS10165 0.72 -1.6
2,293,215 + DDA3937_RS10165 0.72 +1.6
2,293,216 - DDA3937_RS10165 0.72 +0.0
2,293,216 - DDA3937_RS10165 0.72 -0.3
2,293,216 - DDA3937_RS10165 0.72 -1.2
2,293,216 - DDA3937_RS10165 0.72 +1.7
2,293,499 + -0.7
2,293,500 - -0.3
2,293,521 + -1.0
2,293,522 - -1.0
2,293,534 + -1.0
2,293,534 + +0.9
2,293,535 - -1.0
2,293,536 + -0.4
2,293,536 + -1.0
2,293,536 + -1.5
2,293,537 - -0.9
2,293,543 + +1.0
2,293,568 + +3.8
2,293,665 - -1.8
2,293,741 - -0.7
2,293,929 + DDA3937_RS10170 0.35 -2.3
2,294,092 - DDA3937_RS10170 0.67 +0.0
2,294,096 + DDA3937_RS10170 0.67 -3.3
2,294,096 + DDA3937_RS10170 0.67 -2.0
2,294,118 + DDA3937_RS10170 0.72 -0.9
2,294,118 + DDA3937_RS10170 0.72 -2.2
2,294,118 + DDA3937_RS10170 0.72 -0.6
2,294,118 + DDA3937_RS10170 0.72 -0.2
2,294,159 + DDA3937_RS10170 0.80 -2.1
2,294,159 + DDA3937_RS10170 0.80 -1.5
2,294,263 - +0.1
2,294,336 - +1.6
2,294,357 - +1.3
2,294,361 + -1.9
2,294,361 + +1.8
2,294,361 + -0.2
2,294,361 + -1.2
2,294,362 - -2.0
2,294,363 + -0.1
2,294,364 - +0.7
2,294,364 - +0.0
2,294,391 - -1.2
2,294,391 - -1.9
2,294,391 - -0.7
2,294,392 + -0.2
2,294,475 - -0.7
2,294,510 - -2.0
2,294,510 - -0.3
2,294,523 + -2.4
2,294,523 + +0.7
2,294,523 + -1.2
2,294,550 - -1.7
2,294,550 - -0.4
2,294,550 - +3.6
2,294,573 - +2.7
2,294,576 - -0.2
2,294,606 + -0.7
2,294,606 + +1.3
2,294,607 - +0.3
2,294,607 - +2.0
2,294,607 - +0.3
2,294,695 - +3.4
2,294,773 + -1.4
2,294,841 + -0.4
2,294,841 + -2.2
2,294,841 + -1.4
2,294,842 - -2.7
2,294,850 + +0.4
2,294,933 - DDA3937_RS10175 0.16 -2.1
2,294,978 + DDA3937_RS10175 0.22 -1.2
2,294,979 - DDA3937_RS10175 0.22 -0.1
2,294,980 + DDA3937_RS10175 0.23 +0.5
2,294,980 + DDA3937_RS10175 0.23 -1.2
2,294,981 - DDA3937_RS10175 0.23 -2.0
2,294,985 - DDA3937_RS10175 0.23 +1.6
2,295,004 - DDA3937_RS10175 0.26 -0.9
2,295,053 - DDA3937_RS10175 0.32 -0.2
2,295,122 + DDA3937_RS10175 0.42 +0.5
2,295,123 - DDA3937_RS10175 0.42 -2.7
2,295,151 + DDA3937_RS10175 0.46 +1.1
2,295,151 + +0.0
2,295,169 + DDA3937_RS10175 0.48 +0.9
2,295,169 + DDA3937_RS10175 0.48 -1.0
2,295,170 - DDA3937_RS10175 0.48 +1.3
2,295,170 - DDA3937_RS10175 0.48 +1.6
2,295,170 - DDA3937_RS10175 0.48 -0.9

Or see this region's nucleotide sequence