Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS10165 and DDA3937_RS10170 are separated by 287 nucleotides DDA3937_RS10170 and DDA3937_RS10175 are separated by 551 nucleotides
DDA3937_RS10165: DDA3937_RS10165 - copper homeostasis membrane protein CopD, at 2,292,586 to 2,293,464
_RS10165
DDA3937_RS10170: DDA3937_RS10170 - non-heme ferritin, at 2,293,752 to 2,294,261
_RS10170
DDA3937_RS10175: DDA3937_RS10175 - DNA/RNA non-specific endonuclease, at 2,294,813 to 2,295,553
_RS10175
Position (kb)
2293
2294
2295 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2292.771 kb on - strand, within DDA3937_RS10165 at 2292.771 kb on - strand, within DDA3937_RS10165 at 2292.810 kb on + strand, within DDA3937_RS10165 at 2292.811 kb on - strand, within DDA3937_RS10165 at 2292.811 kb on - strand, within DDA3937_RS10165 at 2292.811 kb on - strand, within DDA3937_RS10165 at 2292.885 kb on - strand, within DDA3937_RS10165 at 2292.885 kb on - strand, within DDA3937_RS10165 at 2292.959 kb on + strand, within DDA3937_RS10165 at 2292.960 kb on - strand, within DDA3937_RS10165 at 2292.969 kb on - strand, within DDA3937_RS10165 at 2292.969 kb on - strand, within DDA3937_RS10165 at 2293.023 kb on - strand, within DDA3937_RS10165 at 2293.141 kb on - strand, within DDA3937_RS10165 at 2293.215 kb on + strand, within DDA3937_RS10165 at 2293.215 kb on + strand, within DDA3937_RS10165 at 2293.215 kb on + strand, within DDA3937_RS10165 at 2293.216 kb on - strand, within DDA3937_RS10165 at 2293.216 kb on - strand, within DDA3937_RS10165 at 2293.216 kb on - strand, within DDA3937_RS10165 at 2293.216 kb on - strand, within DDA3937_RS10165 at 2293.499 kb on + strand at 2293.500 kb on - strand at 2293.521 kb on + strand at 2293.522 kb on - strand at 2293.534 kb on + strand at 2293.534 kb on + strand at 2293.535 kb on - strand at 2293.536 kb on + strand at 2293.536 kb on + strand at 2293.536 kb on + strand at 2293.537 kb on - strand at 2293.543 kb on + strand at 2293.568 kb on + strand at 2293.665 kb on - strand at 2293.741 kb on - strand at 2293.929 kb on + strand, within DDA3937_RS10170 at 2294.092 kb on - strand, within DDA3937_RS10170 at 2294.096 kb on + strand, within DDA3937_RS10170 at 2294.096 kb on + strand, within DDA3937_RS10170 at 2294.118 kb on + strand, within DDA3937_RS10170 at 2294.118 kb on + strand, within DDA3937_RS10170 at 2294.118 kb on + strand, within DDA3937_RS10170 at 2294.118 kb on + strand, within DDA3937_RS10170 at 2294.159 kb on + strand, within DDA3937_RS10170 at 2294.159 kb on + strand, within DDA3937_RS10170 at 2294.263 kb on - strand at 2294.336 kb on - strand at 2294.357 kb on - strand at 2294.361 kb on + strand at 2294.361 kb on + strand at 2294.361 kb on + strand at 2294.361 kb on + strand at 2294.362 kb on - strand at 2294.363 kb on + strand at 2294.364 kb on - strand at 2294.364 kb on - strand at 2294.391 kb on - strand at 2294.391 kb on - strand at 2294.391 kb on - strand at 2294.392 kb on + strand at 2294.475 kb on - strand at 2294.510 kb on - strand at 2294.510 kb on - strand at 2294.523 kb on + strand at 2294.523 kb on + strand at 2294.523 kb on + strand at 2294.550 kb on - strand at 2294.550 kb on - strand at 2294.550 kb on - strand at 2294.573 kb on - strand at 2294.576 kb on - strand at 2294.606 kb on + strand at 2294.606 kb on + strand at 2294.607 kb on - strand at 2294.607 kb on - strand at 2294.607 kb on - strand at 2294.695 kb on - strand at 2294.773 kb on + strand at 2294.841 kb on + strand at 2294.841 kb on + strand at 2294.841 kb on + strand at 2294.842 kb on - strand at 2294.850 kb on + strand at 2294.933 kb on - strand, within DDA3937_RS10175 at 2294.978 kb on + strand, within DDA3937_RS10175 at 2294.979 kb on - strand, within DDA3937_RS10175 at 2294.980 kb on + strand, within DDA3937_RS10175 at 2294.980 kb on + strand, within DDA3937_RS10175 at 2294.981 kb on - strand, within DDA3937_RS10175 at 2294.985 kb on - strand, within DDA3937_RS10175 at 2295.004 kb on - strand, within DDA3937_RS10175 at 2295.053 kb on - strand, within DDA3937_RS10175 at 2295.122 kb on + strand, within DDA3937_RS10175 at 2295.123 kb on - strand, within DDA3937_RS10175 at 2295.151 kb on + strand, within DDA3937_RS10175 at 2295.151 kb on + strand at 2295.169 kb on + strand, within DDA3937_RS10175 at 2295.169 kb on + strand, within DDA3937_RS10175 at 2295.170 kb on - strand, within DDA3937_RS10175 at 2295.170 kb on - strand, within DDA3937_RS10175 at 2295.170 kb on - strand, within DDA3937_RS10175
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 2,292,771 - DDA3937_RS10165 0.21 +1.0 2,292,771 - DDA3937_RS10165 0.21 +0.3 2,292,810 + DDA3937_RS10165 0.25 -0.7 2,292,811 - DDA3937_RS10165 0.26 +1.1 2,292,811 - DDA3937_RS10165 0.26 -1.2 2,292,811 - DDA3937_RS10165 0.26 -1.0 2,292,885 - DDA3937_RS10165 0.34 +0.6 2,292,885 - DDA3937_RS10165 0.34 -2.9 2,292,959 + DDA3937_RS10165 0.42 +0.6 2,292,960 - DDA3937_RS10165 0.43 -0.3 2,292,969 - DDA3937_RS10165 0.44 +1.1 2,292,969 - DDA3937_RS10165 0.44 +0.0 2,293,023 - DDA3937_RS10165 0.50 -1.0 2,293,141 - DDA3937_RS10165 0.63 -2.4 2,293,215 + DDA3937_RS10165 0.72 -2.2 2,293,215 + DDA3937_RS10165 0.72 -1.6 2,293,215 + DDA3937_RS10165 0.72 +1.6 2,293,216 - DDA3937_RS10165 0.72 +0.0 2,293,216 - DDA3937_RS10165 0.72 -0.3 2,293,216 - DDA3937_RS10165 0.72 -1.2 2,293,216 - DDA3937_RS10165 0.72 +1.7 2,293,499 + -0.7 2,293,500 - -0.3 2,293,521 + -1.0 2,293,522 - -1.0 2,293,534 + -1.0 2,293,534 + +0.9 2,293,535 - -1.0 2,293,536 + -0.4 2,293,536 + -1.0 2,293,536 + -1.5 2,293,537 - -0.9 2,293,543 + +1.0 2,293,568 + +3.8 2,293,665 - -1.8 2,293,741 - -0.7 2,293,929 + DDA3937_RS10170 0.35 -2.3 2,294,092 - DDA3937_RS10170 0.67 +0.0 2,294,096 + DDA3937_RS10170 0.67 -3.3 2,294,096 + DDA3937_RS10170 0.67 -2.0 2,294,118 + DDA3937_RS10170 0.72 -0.9 2,294,118 + DDA3937_RS10170 0.72 -2.2 2,294,118 + DDA3937_RS10170 0.72 -0.6 2,294,118 + DDA3937_RS10170 0.72 -0.2 2,294,159 + DDA3937_RS10170 0.80 -2.1 2,294,159 + DDA3937_RS10170 0.80 -1.5 2,294,263 - +0.1 2,294,336 - +1.6 2,294,357 - +1.3 2,294,361 + -1.9 2,294,361 + +1.8 2,294,361 + -0.2 2,294,361 + -1.2 2,294,362 - -2.0 2,294,363 + -0.1 2,294,364 - +0.7 2,294,364 - +0.0 2,294,391 - -1.2 2,294,391 - -1.9 2,294,391 - -0.7 2,294,392 + -0.2 2,294,475 - -0.7 2,294,510 - -2.0 2,294,510 - -0.3 2,294,523 + -2.4 2,294,523 + +0.7 2,294,523 + -1.2 2,294,550 - -1.7 2,294,550 - -0.4 2,294,550 - +3.6 2,294,573 - +2.7 2,294,576 - -0.2 2,294,606 + -0.7 2,294,606 + +1.3 2,294,607 - +0.3 2,294,607 - +2.0 2,294,607 - +0.3 2,294,695 - +3.4 2,294,773 + -1.4 2,294,841 + -0.4 2,294,841 + -2.2 2,294,841 + -1.4 2,294,842 - -2.7 2,294,850 + +0.4 2,294,933 - DDA3937_RS10175 0.16 -2.1 2,294,978 + DDA3937_RS10175 0.22 -1.2 2,294,979 - DDA3937_RS10175 0.22 -0.1 2,294,980 + DDA3937_RS10175 0.23 +0.5 2,294,980 + DDA3937_RS10175 0.23 -1.2 2,294,981 - DDA3937_RS10175 0.23 -2.0 2,294,985 - DDA3937_RS10175 0.23 +1.6 2,295,004 - DDA3937_RS10175 0.26 -0.9 2,295,053 - DDA3937_RS10175 0.32 -0.2 2,295,122 + DDA3937_RS10175 0.42 +0.5 2,295,123 - DDA3937_RS10175 0.42 -2.7 2,295,151 + DDA3937_RS10175 0.46 +1.1 2,295,151 + +0.0 2,295,169 + DDA3937_RS10175 0.48 +0.9 2,295,169 + DDA3937_RS10175 0.48 -1.0 2,295,170 - DDA3937_RS10175 0.48 +1.3 2,295,170 - DDA3937_RS10175 0.48 +1.6 2,295,170 - DDA3937_RS10175 0.48 -0.9
Or see this region's nucleotide sequence