Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10150

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,288,352	+		DDA3937_RS10145	0.50	-3.9
2,288,408	-		DDA3937_RS10145	0.54	-2.9
2,288,489	+		DDA3937_RS10145	0.61	-1.2
2,288,490	-		DDA3937_RS10145	0.61	+0.1
2,288,490	-		DDA3937_RS10145	0.61	-0.6
2,288,678	+		DDA3937_RS10145	0.77	-0.7
2,288,678	+		DDA3937_RS10145	0.77	-0.0
2,288,678	+		DDA3937_RS10145	0.77	-3.4
2,288,678	+		DDA3937_RS10145	0.77	+0.3
2,288,679	-		DDA3937_RS10145	0.77	-1.4
2,288,679	-		DDA3937_RS10145	0.77	-1.2
2,288,679	-		DDA3937_RS10145	0.77	-1.2
2,288,679	-		DDA3937_RS10145	0.77	-1.0
2,288,691	-		DDA3937_RS10145	0.78	-1.7
2,288,691	-		DDA3937_RS10145	0.78	-2.9
2,288,714	-		DDA3937_RS10145	0.80	+0.6
2,288,765	+		DDA3937_RS10145	0.85	+1.4
2,288,765	+		DDA3937_RS10145	0.85	-1.4
2,288,765	+		DDA3937_RS10145	0.85	-1.0
2,288,766	-		DDA3937_RS10145	0.85	+0.6
2,288,766	-		DDA3937_RS10145	0.85	-1.5
2,288,766	-		DDA3937_RS10145	0.85	+0.3
2,288,766	-		DDA3937_RS10145	0.85	+1.0
2,288,940	+				-0.4
2,288,941	-				+0.7
2,288,946	-				-2.2
2,288,979	+				-2.1
2,288,980	-				+0.8
2,289,049	-				-0.7
2,289,291	+				-1.2
2,289,292	-				-1.9
2,289,292	-				-1.6
2,289,295	+				+2.6
2,289,295	+				-0.6
2,289,295	+				+2.4
2,289,296	-				-1.2
2,289,296	-				-0.4
2,289,296	-				-2.0
2,289,298	+				+1.2
2,289,299	-				-0.7
2,289,412	+				-1.5
2,289,412	+				-0.0
2,289,412	+				+1.6
2,289,413	-				+0.2
2,289,413	-				-1.9
2,289,460	+				-0.7
2,289,460	+		DDA3937_RS10150	0.11	-2.7
2,289,460	+		DDA3937_RS10150	0.11	+0.3
2,289,460	+		DDA3937_RS10150	0.11	-2.7
2,289,461	-		DDA3937_RS10150	0.11	-1.5
2,289,511	+		DDA3937_RS10150	0.14	-1.4
2,289,512	-		DDA3937_RS10150	0.14	-0.7
2,289,520	+		DDA3937_RS10150	0.14	-0.9
2,289,521	-		DDA3937_RS10150	0.14	-1.1
2,289,521	-		DDA3937_RS10150	0.14	-1.2
2,289,521	-		DDA3937_RS10150	0.14	-0.7
2,289,521	-		DDA3937_RS10150	0.14	+1.4
2,289,566	+		DDA3937_RS10150	0.17	-1.9
2,289,567	-		DDA3937_RS10150	0.17	+0.3
2,289,608	-		DDA3937_RS10150	0.19	-1.4
2,289,685	+		DDA3937_RS10150	0.22	+0.2
2,289,685	+		DDA3937_RS10150	0.22	-3.2
2,289,686	-		DDA3937_RS10150	0.22	-1.0
2,289,686	-		DDA3937_RS10150	0.22	+0.8
2,289,787	+		DDA3937_RS10150	0.27	-0.4
2,289,787	+		DDA3937_RS10150	0.27	+1.2
2,289,787	+		DDA3937_RS10150	0.27	-2.0
2,289,788	-		DDA3937_RS10150	0.27	-1.2
2,289,788	-		DDA3937_RS10150	0.27	-0.4
2,289,788	-		DDA3937_RS10150	0.27	-0.8
2,289,788	-		DDA3937_RS10150	0.27	-2.0
2,289,790	+		DDA3937_RS10150	0.27	+0.8
2,289,790	+		DDA3937_RS10150	0.27	-1.6
2,289,790	+		DDA3937_RS10150	0.27	-0.1
2,289,790	+		DDA3937_RS10150	0.27	+1.9
2,289,790	+		DDA3937_RS10150	0.27	-1.9
2,289,790	+		DDA3937_RS10150	0.27	-2.7
2,289,790	+		DDA3937_RS10150	0.27	-0.4
2,289,790	+		DDA3937_RS10150	0.27	+0.7
2,289,790	+		DDA3937_RS10150	0.27	+0.7
2,289,791	-		DDA3937_RS10150	0.28	+0.8
2,289,791	-		DDA3937_RS10150	0.28	-1.7
2,289,791	-		DDA3937_RS10150	0.28	-0.7
2,289,791	-		DDA3937_RS10150	0.28	-0.7
2,289,791	-		DDA3937_RS10150	0.28	-1.3
2,289,791	-		DDA3937_RS10150	0.28	-2.6
2,289,799	-		DDA3937_RS10150	0.28	+1.1
2,289,832	+		DDA3937_RS10150	0.30	+1.6
2,289,877	+		DDA3937_RS10150	0.32	-0.7
2,289,878	-		DDA3937_RS10150	0.32	-3.1
2,289,901	+		DDA3937_RS10150	0.33	-0.0
2,289,901	+		DDA3937_RS10150	0.33	-2.5
2,289,901	+		DDA3937_RS10150	0.33	+0.8
2,289,901	+		DDA3937_RS10150	0.33	+0.6
2,289,902	-		DDA3937_RS10150	0.33	-0.4
2,289,907	-		DDA3937_RS10150	0.33	-2.0
2,289,907	-		DDA3937_RS10150	0.33	-2.7
2,289,934	+		DDA3937_RS10150	0.35	-1.6
2,289,934	+		DDA3937_RS10150	0.35	-2.2
2,289,934	+		DDA3937_RS10150	0.35	-0.8
2,289,936	+		DDA3937_RS10150	0.35	-0.0
2,289,936	+		DDA3937_RS10150	0.35	+0.6
2,289,937	-		DDA3937_RS10150	0.35	-2.6
2,289,946	+		DDA3937_RS10150	0.35	-1.4
2,289,947	-		DDA3937_RS10150	0.35	+0.9
2,290,045	+		DDA3937_RS10150	0.40	+0.1
2,290,046	-		DDA3937_RS10150	0.40	+3.5
2,290,046	-		DDA3937_RS10150	0.40	-1.7
2,290,075	+		DDA3937_RS10150	0.41	-1.2
2,290,075	+		DDA3937_RS10150	0.41	-1.3
2,290,075	+		DDA3937_RS10150	0.41	-1.2
2,290,075	+		DDA3937_RS10150	0.41	+0.5
2,290,075	+		DDA3937_RS10150	0.41	-1.2
2,290,076	-		DDA3937_RS10150	0.41	-0.4
2,290,076	-		DDA3937_RS10150	0.41	-2.5
2,290,076	-		DDA3937_RS10150	0.41	-0.5
2,290,211	-		DDA3937_RS10150	0.48	+0.5
2,290,253	-		DDA3937_RS10150	0.50	-0.4
2,290,253	-		DDA3937_RS10150	0.50	-3.3
2,290,253	-		DDA3937_RS10150	0.50	-1.6
2,290,253	-		DDA3937_RS10150	0.50	-0.7
2,290,253	-		DDA3937_RS10150	0.50	+1.6
2,290,254	+		DDA3937_RS10150	0.50	+1.1
2,290,254	+		DDA3937_RS10150	0.50	-2.6
2,290,255	-		DDA3937_RS10150	0.50	-1.4
2,290,255	-		DDA3937_RS10150	0.50	-0.4
2,290,255	-		DDA3937_RS10150	0.50	-2.1
2,290,255	-		DDA3937_RS10150	0.50	-2.9
2,290,255	-				-1.0
2,290,306	+		DDA3937_RS10150	0.53	+0.3
2,290,306	+		DDA3937_RS10150	0.53	-0.4
2,290,306	+		DDA3937_RS10150	0.53	-1.1
2,290,324	+		DDA3937_RS10150	0.54	-0.4
2,290,324	+		DDA3937_RS10150	0.54	+0.7
2,290,324	+		DDA3937_RS10150	0.54	-1.3
2,290,324	+		DDA3937_RS10150	0.54	+3.2
2,290,325	-				-1.0
2,290,325	-		DDA3937_RS10150	0.54	+2.2
2,290,344	+		DDA3937_RS10150	0.54	+1.6
2,290,363	+		DDA3937_RS10150	0.55	-2.9
2,290,389	+		DDA3937_RS10150	0.57	+2.3
2,290,389	+		DDA3937_RS10150	0.57	-1.9
2,290,390	-		DDA3937_RS10150	0.57	-0.0
2,290,393	+		DDA3937_RS10150	0.57	+0.9
2,290,393	+		DDA3937_RS10150	0.57	+2.4
2,290,393	+		DDA3937_RS10150	0.57	+2.5
2,290,393	+		DDA3937_RS10150	0.57	-1.2
2,290,393	+		DDA3937_RS10150	0.57	+0.8
2,290,394	-		DDA3937_RS10150	0.57	-1.6
2,290,394	-		DDA3937_RS10150	0.57	-1.9
2,290,394	-		DDA3937_RS10150	0.57	+2.0
2,290,394	-		DDA3937_RS10150	0.57	-1.7
2,290,394	-		DDA3937_RS10150	0.57	-0.4
2,290,400	+		DDA3937_RS10150	0.57	-1.7
2,290,400	+		DDA3937_RS10150	0.57	-3.2
2,290,400	+		DDA3937_RS10150	0.57	+0.3
2,290,401	-		DDA3937_RS10150	0.57	-1.3
2,290,401	-		DDA3937_RS10150	0.57	+1.2
2,290,401	-		DDA3937_RS10150	0.57	+2.3
2,290,401	-		DDA3937_RS10150	0.57	+0.1
2,290,401	-		DDA3937_RS10150	0.57	-1.4
2,290,401	-		DDA3937_RS10150	0.57	-2.5
2,290,401	-		DDA3937_RS10150	0.57	-2.1
2,290,405	-		DDA3937_RS10150	0.57	-0.7
2,290,531	+		DDA3937_RS10150	0.64	+1.0
2,290,531	+		DDA3937_RS10150	0.64	+1.2
2,290,573	+		DDA3937_RS10150	0.66	-0.6
2,290,574	-		DDA3937_RS10150	0.66	+0.6
2,290,599	+		DDA3937_RS10150	0.67	+1.1
2,290,600	-		DDA3937_RS10150	0.67	-1.6
2,290,600	-		DDA3937_RS10150	0.67	-0.2
2,290,654	+		DDA3937_RS10150	0.70	+0.5
2,290,654	+		DDA3937_RS10150	0.70	+0.2
2,290,654	+		DDA3937_RS10150	0.70	+1.1
2,290,655	-		DDA3937_RS10150	0.70	-0.4
2,290,669	-		DDA3937_RS10150	0.70	-1.6
2,290,669	-		DDA3937_RS10150	0.70	-1.6
2,290,734	+		DDA3937_RS10150	0.73	-1.2
2,290,734	+		DDA3937_RS10150	0.73	-2.1
2,290,734	+		DDA3937_RS10150	0.73	+1.0
2,290,734	+		DDA3937_RS10150	0.73	-2.1
2,290,735	-		DDA3937_RS10150	0.74	+0.4
2,290,735	-		DDA3937_RS10150	0.74	-0.5
2,290,851	+		DDA3937_RS10150	0.79	+0.7
2,290,851	+		DDA3937_RS10150	0.79	-1.2
2,290,851	+		DDA3937_RS10150	0.79	-0.0
2,290,852	-		DDA3937_RS10150	0.79	+0.3
2,290,852	-		DDA3937_RS10150	0.79	-2.4
2,290,852	-		DDA3937_RS10150	0.79	-1.4
2,290,854	+		DDA3937_RS10150	0.79	-0.3
2,290,933	-		DDA3937_RS10150	0.83	-0.7
2,290,933	-		DDA3937_RS10150	0.83	-0.9
2,290,954	+		DDA3937_RS10150	0.84	-1.4
2,290,996	+		DDA3937_RS10150	0.86	-2.2
2,290,996	+		DDA3937_RS10150	0.86	-2.2
2,290,996	+		DDA3937_RS10150	0.86	-1.6
2,290,997	-		DDA3937_RS10150	0.86	+1.4
2,290,997	-		DDA3937_RS10150	0.86	-0.7
2,290,997	-		DDA3937_RS10150	0.86	+4.1
2,290,997	-		DDA3937_RS10150	0.86	+2.7
2,291,008	+		DDA3937_RS10150	0.87	-4.1
2,291,009	-		DDA3937_RS10150	0.87	-1.6
2,291,009	-		DDA3937_RS10150	0.87	+0.6
2,291,009	-		DDA3937_RS10150	0.87	+0.6
2,291,017	+		DDA3937_RS10150	0.87	-0.0
2,291,017	+		DDA3937_RS10150	0.87	-0.0
2,291,018	-		DDA3937_RS10150	0.87	-1.6
2,291,120	+				-0.7
2,291,275	+				-1.4
2,291,275	+				+2.1
2,291,276	-				-1.0
2,291,276	-				-2.1
2,291,287	-				-0.5
2,291,297	+				-2.9
2,291,297	+				+1.2
2,291,297	+				+1.2
2,291,298	-				-0.4
2,291,298	-				-0.9
2,291,312	+				-1.0
2,291,512	-				-2.3
2,291,589	+				-1.6
2,291,589	+				-1.6
2,291,590	-				+1.2
2,291,590	-				-2.2
2,291,612	+				-0.0
2,291,634	-				+0.9
2,291,634	-				+2.5
2,291,634	-				-2.3
2,291,636	+				-1.9
2,291,699	+				+0.3
2,291,700	-				+0.6
2,291,700	-				+2.8
2,291,815	+				-0.7
2,291,816	-				-3.2
2,291,816	-				-2.4
2,291,816	-				-0.4
2,291,816	-				-1.6
2,291,829	+				+0.3
2,291,829	+				+0.9
2,291,868	+		DDA3937_RS10155	0.25	-2.8
2,291,869	-		DDA3937_RS10155	0.26	-2.1
2,291,949	+		DDA3937_RS10155	0.60	-0.1
2,291,949	+		DDA3937_RS10155	0.60	+0.0
2,291,949	+		DDA3937_RS10155	0.60	+0.9
2,291,950	-		DDA3937_RS10155	0.61	-1.9
2,291,950	-		DDA3937_RS10155	0.61	-2.1
2,292,013	-				+0.0
2,292,013	-		DDA3937_RS10155	0.88	-1.9