Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09995

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,255,434	+		DDA3937_RS09990	0.43	+0.1
2,255,443	+		DDA3937_RS09990	0.44	+0.2
2,255,444	-		DDA3937_RS09990	0.44	-2.4
2,255,459	+		DDA3937_RS09990	0.45	-1.2
2,255,460	-		DDA3937_RS09990	0.45	-0.2
2,255,480	+		DDA3937_RS09990	0.47	+4.1
2,255,481	-		DDA3937_RS09990	0.47	-0.4
2,255,481	-		DDA3937_RS09990	0.47	+0.5
2,255,481	-		DDA3937_RS09990	0.47	-1.9
2,255,578	+		DDA3937_RS09990	0.55	-0.8
2,255,578	+		DDA3937_RS09990	0.55	-1.6
2,255,579	-		DDA3937_RS09990	0.55	-0.7
2,255,579	-		DDA3937_RS09990	0.55	+0.0
2,255,579	-		DDA3937_RS09990	0.55	-1.2
2,255,579	-		DDA3937_RS09990	0.55	+0.9
2,255,600	-		DDA3937_RS09990	0.57	-2.0
2,255,636	+		DDA3937_RS09990	0.60	-1.0
2,255,637	-		DDA3937_RS09990	0.60	-0.6
2,255,779	-		DDA3937_RS09990	0.72	-1.8
2,255,928	+		DDA3937_RS09990	0.84	-1.0
2,255,928	+				+2.1
2,256,158	-				+2.0
2,256,185	+				-1.6
2,256,190	+				+0.2
2,256,191	-				+1.4
2,256,279	-				+0.2
2,256,298	+				+1.0
2,256,313	-				+2.0
2,256,321	-				+0.8
2,256,321	-				+4.3
2,256,322	+				-1.4
2,256,323	-				+3.3
2,256,323	-				+1.6
2,256,323	-				-1.0
2,256,325	+				-2.2
2,256,325	+				-0.8
2,256,326	-				+0.3
2,256,344	-				-2.1
2,256,344	-				-0.7
2,256,351	+				+1.6
2,256,351	+				-1.4
2,256,352	-				+2.6
2,256,527	+		DDA3937_RS09995	0.17	+0.4
2,256,527	+				-0.0
2,256,531	-		DDA3937_RS09995	0.18	+0.8
2,256,590	+		DDA3937_RS09995	0.28	+1.8
2,256,591	-		DDA3937_RS09995	0.28	+0.9
2,256,656	+		DDA3937_RS09995	0.39	-1.6
2,256,743	+		DDA3937_RS09995	0.54	+0.9
2,256,743	+		DDA3937_RS09995	0.54	-0.9
2,256,752	+		DDA3937_RS09995	0.55	+0.6
2,256,753	-		DDA3937_RS09995	0.56	+1.5
2,256,791	+		DDA3937_RS09995	0.62	+3.7
2,256,791	+		DDA3937_RS09995	0.62	+1.4
2,256,791	+		DDA3937_RS09995	0.62	-1.4
2,256,791	+		DDA3937_RS09995	0.62	+2.1
2,256,791	+		DDA3937_RS09995	0.62	+3.5
2,256,792	-		DDA3937_RS09995	0.62	+0.1
2,256,792	-		DDA3937_RS09995	0.62	+0.7
2,256,818	+		DDA3937_RS09995	0.67	+1.2
2,256,819	-		DDA3937_RS09995	0.67	+0.3
2,256,819	-		DDA3937_RS09995	0.67	+1.9
2,256,819	-		DDA3937_RS09995	0.67	+3.0
2,256,819	-		DDA3937_RS09995	0.67	+0.6
2,256,819	-		DDA3937_RS09995	0.67	-1.1
2,256,838	+		DDA3937_RS09995	0.70	+1.1
2,256,838	+		DDA3937_RS09995	0.70	+2.5
2,256,838	+		DDA3937_RS09995	0.70	+1.7
2,256,838	+		DDA3937_RS09995	0.70	+1.3
2,256,838	+		DDA3937_RS09995	0.70	+1.4
2,256,838	+				-0.4
2,256,838	+		DDA3937_RS09995	0.70	+2.1
2,256,838	+		DDA3937_RS09995	0.70	-0.4
2,256,838	+		DDA3937_RS09995	0.70	-3.1
2,256,838	+		DDA3937_RS09995	0.70	-1.2
2,256,838	+		DDA3937_RS09995	0.70	+1.1
2,256,839	-		DDA3937_RS09995	0.70	+1.2
2,256,839	-		DDA3937_RS09995	0.70	-1.4
2,256,839	-		DDA3937_RS09995	0.70	+1.4
2,256,839	-		DDA3937_RS09995	0.70	-3.0
2,256,839	-		DDA3937_RS09995	0.70	+1.1
2,256,839	-		DDA3937_RS09995	0.70	-0.6
2,256,839	-		DDA3937_RS09995	0.70	-0.5
2,256,839	-		DDA3937_RS09995	0.70	-1.0
2,256,839	-		DDA3937_RS09995	0.70	-1.2
2,256,839	-		DDA3937_RS09995	0.70	-1.2
2,256,839	-		DDA3937_RS09995	0.70	-1.1
2,256,839	-		DDA3937_RS09995	0.70	-0.1
2,256,839	-		DDA3937_RS09995	0.70	-0.9
2,256,839	-		DDA3937_RS09995	0.70	-2.4
2,256,839	-		DDA3937_RS09995	0.70	-0.1
2,256,839	-		DDA3937_RS09995	0.70	-2.9
2,256,839	-		DDA3937_RS09995	0.70	+3.1
2,256,839	-		DDA3937_RS09995	0.70	+0.6
2,256,847	+		DDA3937_RS09995	0.72	+1.4
2,256,847	+		DDA3937_RS09995	0.72	+1.2
2,256,847	+		DDA3937_RS09995	0.72	+2.0
2,256,848	-		DDA3937_RS09995	0.72	+0.3
2,256,850	+		DDA3937_RS09995	0.72	+3.9
2,256,850	+		DDA3937_RS09995	0.72	-2.1
2,256,850	+		DDA3937_RS09995	0.72	+0.8
2,256,851	-		DDA3937_RS09995	0.72	+0.2
2,256,851	-		DDA3937_RS09995	0.72	-1.6
2,256,856	+		DDA3937_RS09995	0.73	+2.4
2,256,856	+		DDA3937_RS09995	0.73	+2.3
2,256,857	-		DDA3937_RS09995	0.73	+0.8
2,256,860	+		DDA3937_RS09995	0.74	-1.8
2,256,860	+		DDA3937_RS09995	0.74	+1.6
2,256,860	+		DDA3937_RS09995	0.74	+0.1
2,256,860	+		DDA3937_RS09995	0.74	+0.6
2,256,860	+		DDA3937_RS09995	0.74	+0.3
2,256,860	+		DDA3937_RS09995	0.74	+0.2
2,256,860	+		DDA3937_RS09995	0.74	+2.7
2,256,860	+		DDA3937_RS09995	0.74	+2.7
2,256,860	+		DDA3937_RS09995	0.74	-0.6
2,256,860	+		DDA3937_RS09995	0.74	+0.2
2,256,860	+		DDA3937_RS09995	0.74	+1.9
2,256,860	+		DDA3937_RS09995	0.74	+1.6
2,256,860	+		DDA3937_RS09995	0.74	+1.4
2,256,861	-		DDA3937_RS09995	0.74	+1.0
2,256,861	-		DDA3937_RS09995	0.74	+0.5
2,256,861	-		DDA3937_RS09995	0.74	-2.0
2,256,861	-		DDA3937_RS09995	0.74	-0.1
2,256,861	-		DDA3937_RS09995	0.74	+0.6
2,256,861	-		DDA3937_RS09995	0.74	+1.4
2,256,861	-		DDA3937_RS09995	0.74	+0.1
2,256,861	-		DDA3937_RS09995	0.74	-1.4
2,256,861	-		DDA3937_RS09995	0.74	+2.1
2,256,861	-		DDA3937_RS09995	0.74	-1.5
2,256,861	-		DDA3937_RS09995	0.74	+0.4
2,256,861	-		DDA3937_RS09995	0.74	+1.6
2,256,861	-		DDA3937_RS09995	0.74	+0.8
2,256,862	+		DDA3937_RS09995	0.74	+1.6
2,256,862	+		DDA3937_RS09995	0.74	+2.5
2,256,862	+		DDA3937_RS09995	0.74	+0.4
2,256,862	+		DDA3937_RS09995	0.74	+1.2
2,256,862	+		DDA3937_RS09995	0.74	+0.4
2,256,863	-		DDA3937_RS09995	0.74	+1.6
2,256,863	-		DDA3937_RS09995	0.74	-1.2
2,256,923	+		DDA3937_RS09995	0.85	+0.3
2,256,923	+		DDA3937_RS09995	0.85	-1.0
2,256,935	+		DDA3937_RS09995	0.87	+0.8
2,256,935	+		DDA3937_RS09995	0.87	-0.6
2,256,935	+		DDA3937_RS09995	0.87	-1.0
2,256,935	+				-0.0
2,256,988	+				-1.3
2,257,044	+				-1.9
2,257,045	-				-2.6
2,257,045	-				-2.0
2,257,073	-				-1.6
2,257,241	-		DDA3937_RS10000	0.31	-0.2
2,257,241	-		DDA3937_RS10000	0.31	-0.8
2,257,245	-		DDA3937_RS10000	0.32	-0.4
2,257,245	-		DDA3937_RS10000	0.32	-0.8
2,257,278	+		DDA3937_RS10000	0.37	-1.0
2,257,279	-		DDA3937_RS10000	0.37	-0.8
2,257,354	+		DDA3937_RS10000	0.49	-0.0
2,257,355	-		DDA3937_RS10000	0.49	-1.8
2,257,355	-		DDA3937_RS10000	0.49	-1.6
2,257,410	+		DDA3937_RS10000	0.58	-0.1
2,257,410	+		DDA3937_RS10000	0.58	-1.0
2,257,411	-		DDA3937_RS10000	0.58	-0.0
2,257,411	-		DDA3937_RS10000	0.58	+0.1
2,257,729	-				-2.6
2,257,729	-				+1.6
2,257,731	+				-1.2
2,257,776	-				-3.3
2,257,776	-				-0.2
2,257,789	-				-1.2
2,257,789	-				+2.9
2,257,865	+		DDA3937_RS10005	0.16	+0.9
2,257,870	+		DDA3937_RS10005	0.16	-2.3
2,257,949	+		DDA3937_RS10005	0.25	-2.0
2,257,949	+		DDA3937_RS10005	0.25	+0.2
2,257,950	-		DDA3937_RS10005	0.25	-0.9
2,257,960	+		DDA3937_RS10005	0.26	-1.4
2,257,961	-		DDA3937_RS10005	0.26	+0.7
2,257,961	-		DDA3937_RS10005	0.26	-2.2
2,257,961	-		DDA3937_RS10005	0.26	+1.1
2,257,991	+		DDA3937_RS10005	0.29	+1.2
2,257,991	+		DDA3937_RS10005	0.29	-0.0
2,257,992	-		DDA3937_RS10005	0.29	-1.6
2,257,992	-		DDA3937_RS10005	0.29	-1.3
2,257,992	-		DDA3937_RS10005	0.29	+1.2
2,257,992	-		DDA3937_RS10005	0.29	+1.6
2,257,992	-		DDA3937_RS10005	0.29	-0.4
2,257,992	-				+0.2
2,257,992	-		DDA3937_RS10005	0.29	+2.2
2,257,992	-		DDA3937_RS10005	0.29	+0.3