Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,148,637	+		DDA3937_RS09540	0.57	-2.1
2,148,637	+		DDA3937_RS09540	0.57	+0.6
2,148,638	-		DDA3937_RS09540	0.57	+1.4
2,148,806	+		DDA3937_RS09540	0.67	-1.2
2,148,806	+		DDA3937_RS09540	0.67	-1.6
2,148,807	-		DDA3937_RS09540	0.67	-2.7
2,148,807	-		DDA3937_RS09540	0.67	+1.0
2,148,807	-		DDA3937_RS09540	0.67	-1.9
2,148,807	-		DDA3937_RS09540	0.67	-0.0
2,148,807	-		DDA3937_RS09540	0.67	-1.0
2,148,807	-		DDA3937_RS09540	0.67	-1.4
2,148,808	+		DDA3937_RS09540	0.68	-0.9
2,148,808	+		DDA3937_RS09540	0.68	-0.0
2,148,808	+		DDA3937_RS09540	0.68	-1.8
2,148,808	+		DDA3937_RS09540	0.68	+0.3
2,148,808	+		DDA3937_RS09540	0.68	-0.0
2,148,808	+		DDA3937_RS09540	0.68	+1.9
2,148,808	+				+0.2
2,148,808	+		DDA3937_RS09540	0.68	+0.9
2,148,808	+		DDA3937_RS09540	0.68	-3.1
2,148,808	+		DDA3937_RS09540	0.68	+1.6
2,148,808	+		DDA3937_RS09540	0.68	-1.2
2,148,809	-		DDA3937_RS09540	0.68	-2.0
2,148,809	-		DDA3937_RS09540	0.68	-0.1
2,148,809	-		DDA3937_RS09540	0.68	+1.6
2,148,809	-		DDA3937_RS09540	0.68	-0.4
2,148,809	-		DDA3937_RS09540	0.68	-1.8
2,148,809	-		DDA3937_RS09540	0.68	+0.6
2,148,809	-		DDA3937_RS09540	0.68	-2.0
2,148,809	-		DDA3937_RS09540	0.68	+0.6
2,148,809	-		DDA3937_RS09540	0.68	-0.2
2,148,809	-		DDA3937_RS09540	0.68	-1.2
2,148,849	+		DDA3937_RS09540	0.70	-1.2
2,148,849	+		DDA3937_RS09540	0.70	+2.3
2,148,850	-		DDA3937_RS09540	0.70	-2.4
2,148,851	+		DDA3937_RS09540	0.70	-0.4
2,148,851	+		DDA3937_RS09540	0.70	-2.1
2,148,851	+		DDA3937_RS09540	0.70	-1.0
2,148,851	+		DDA3937_RS09540	0.70	-0.3
2,148,851	+		DDA3937_RS09540	0.70	+0.9
2,148,851	+		DDA3937_RS09540	0.70	-1.2
2,148,852	-		DDA3937_RS09540	0.70	+0.1
2,148,852	-		DDA3937_RS09540	0.70	-0.8
2,148,852	-		DDA3937_RS09540	0.70	-3.1
2,148,852	-		DDA3937_RS09540	0.70	-0.2
2,148,852	-		DDA3937_RS09540	0.70	+0.5
2,148,852	-		DDA3937_RS09540	0.70	-1.9
2,148,852	-		DDA3937_RS09540	0.70	-2.0
2,148,852	-		DDA3937_RS09540	0.70	-1.0
2,148,852	-		DDA3937_RS09540	0.70	-1.2
2,148,852	-		DDA3937_RS09540	0.70	+0.4
2,148,875	+		DDA3937_RS09540	0.72	+0.3
2,148,875	+		DDA3937_RS09540	0.72	-2.8
2,148,875	+		DDA3937_RS09540	0.72	-1.2
2,148,875	+		DDA3937_RS09540	0.72	+0.4
2,148,903	+		DDA3937_RS09540	0.73	+1.8
2,149,095	+		DDA3937_RS09540	0.85	-2.2
2,149,222	+				-1.6
2,149,223	-				-1.0
2,149,340	+				-0.8
2,149,340	+				+0.4
2,149,341	-				+0.1
2,149,341	-				-2.3
2,149,344	+				-0.8
2,149,344	+				+0.6
2,149,344	+				-2.8
2,149,344	+				-2.9
2,149,344	+				-2.0
2,149,344	+				-1.6
2,149,345	-				+0.6
2,149,345	-				+1.1
2,149,345	-				-1.4
2,149,345	-				-1.4
2,149,345	-				+1.4
2,149,345	-				-1.0
2,149,345	-				-0.8
2,149,345	-				-2.2
2,149,393	+				+0.0
2,149,394	-				-2.2
2,149,394	-				-0.8
2,149,394	-				-0.9
2,149,394	-				-0.0
2,149,425	+				-1.1
2,149,425	+				-0.8
2,149,425	+				+1.9
2,149,426	-				-2.0
2,149,427	+				+0.6
2,149,599	+				+1.1
2,149,599	+				-1.6
2,149,599	+				-1.9
2,149,599	+				+2.1
2,149,599	+				+1.3
2,149,599	+				-0.8
2,149,600	-				-2.0
2,149,635	-				-0.0
2,149,698	-				-0.6
2,149,752	+				+1.3
2,149,752	+				+0.7
2,149,753	-				-1.4
2,149,753	-				-1.9
2,149,753	-				-0.4
2,149,753	-				-0.0
2,149,781	+		DDA3937_RS09545	0.11	+1.5
2,149,782	-		DDA3937_RS09545	0.11	-2.1
2,149,782	-		DDA3937_RS09545	0.11	-0.3
2,149,970	+		DDA3937_RS09545	0.23	-1.0
2,149,971	-		DDA3937_RS09545	0.23	+0.6
2,149,971	-		DDA3937_RS09545	0.23	-2.2
2,150,021	+		DDA3937_RS09545	0.26	+0.6
2,150,253	+		DDA3937_RS09545	0.40	+2.7
2,150,342	+		DDA3937_RS09545	0.45	+1.6
2,150,378	+		DDA3937_RS09545	0.47	+1.9
2,150,379	-		DDA3937_RS09545	0.47	-1.2
2,150,387	+		DDA3937_RS09545	0.48	+0.9
2,150,388	-		DDA3937_RS09545	0.48	-3.2
2,150,390	+		DDA3937_RS09545	0.48	+2.0
2,150,391	-		DDA3937_RS09545	0.48	+0.6
2,150,561	+		DDA3937_RS09545	0.58	+1.0
2,150,562	-		DDA3937_RS09545	0.58	-3.4
2,150,643	+		DDA3937_RS09545	0.63	+1.3
2,150,643	+		DDA3937_RS09545	0.63	+1.4
2,150,643	+		DDA3937_RS09545	0.63	+2.0
2,150,644	-		DDA3937_RS09545	0.63	-2.1
2,150,644	-		DDA3937_RS09545	0.63	+2.9
2,150,644	-		DDA3937_RS09545	0.63	+1.0
2,150,644	-		DDA3937_RS09545	0.63	-1.6
2,150,690	+		DDA3937_RS09545	0.66	-1.6
2,150,690	+		DDA3937_RS09545	0.66	+1.9
2,150,691	-		DDA3937_RS09545	0.66	-1.2
2,150,709	-		DDA3937_RS09545	0.67	-1.4
2,150,726	-		DDA3937_RS09545	0.68	-1.2
2,150,726	-		DDA3937_RS09545	0.68	-0.8
2,150,883	-		DDA3937_RS09545	0.77	+0.3
2,150,883	-		DDA3937_RS09545	0.77	+0.9
2,150,934	+		DDA3937_RS09545	0.81	+0.8
2,151,010	+		DDA3937_RS09545	0.85	-1.0
2,151,010	+		DDA3937_RS09545	0.85	-1.8
2,151,010	+		DDA3937_RS09545	0.85	+0.3
2,151,010	+		DDA3937_RS09545	0.85	-0.2
2,151,014	+		DDA3937_RS09545	0.85	+3.8
2,151,014	+		DDA3937_RS09545	0.85	+0.6
2,151,014	+		DDA3937_RS09545	0.85	-1.9
2,151,014	+		DDA3937_RS09545	0.85	-1.2
2,151,015	-		DDA3937_RS09545	0.85	-0.8
2,151,015	-		DDA3937_RS09545	0.85	-1.2
2,151,015	-		DDA3937_RS09545	0.85	-2.0
2,151,015	-		DDA3937_RS09545	0.85	-0.4
2,151,015	-		DDA3937_RS09545	0.85	-1.0
2,151,030	+		DDA3937_RS09545	0.86	-0.6
2,151,031	-		DDA3937_RS09545	0.86	-0.4
2,151,045	-		DDA3937_RS09545	0.87	+0.3
2,151,074	-		DDA3937_RS09545	0.89	+1.0
2,151,212	+				+0.2
2,151,256	-				-1.0
2,151,264	+				-0.8
2,151,265	-				-0.3
2,151,355	+				-0.8
2,151,359	+				+2.8
2,151,360	-				-1.6
2,151,360	-				-2.2
2,151,517	-		DDA3937_RS09550	0.55	+0.2
2,151,564	+		DDA3937_RS09550	0.77	-1.9
2,151,565	-		DDA3937_RS09550	0.77	-0.6
2,151,565	-		DDA3937_RS09550	0.77	-1.6
2,151,565	-		DDA3937_RS09550	0.77	-1.6
2,151,565	-		DDA3937_RS09550	0.77	+0.3
2,151,597	+				-0.4
2,151,597	+				+1.0
2,151,598	-				-2.2
2,151,598	-				+0.1
2,151,598	-				+0.9
2,151,598	-				-2.3
2,151,603	+				-0.0
2,151,603	+				+1.6
2,151,603	+				-1.1
2,151,604	-				-1.9
2,151,633	+				-0.8
2,151,634	-				-0.8
2,151,645	+				+0.6
2,151,645	+				-0.0
2,151,646	-				+2.7
2,151,706	+				+1.6
2,151,707	-				+0.3
2,151,707	-				-1.2
2,151,714	-				-0.7
2,151,781	-				-1.4
2,151,806	-				+0.1
2,151,867	+				-0.0
2,151,868	-				-0.8
2,151,868	-				-1.3
2,151,910	+				-2.4
2,151,911	-				-1.2
2,151,915	-				-3.0
2,151,932	+				-0.4
2,151,949	+				-0.2
2,151,950	-				-0.3
2,151,950	-				-1.2
2,151,950	-				-0.8
2,151,952	+				-1.0
2,151,952	+				-0.4
2,151,988	+		DDA3937_RS09555	0.16	-0.9
2,151,988	+		DDA3937_RS09555	0.16	-1.6
2,151,989	-		DDA3937_RS09555	0.16	+1.8
2,151,989	-		DDA3937_RS09555	0.16	-1.4
2,151,989	-		DDA3937_RS09555	0.16	-1.1
2,151,989	-		DDA3937_RS09555	0.16	-1.0
2,152,002	+		DDA3937_RS09555	0.20	-1.4
2,152,019	+		DDA3937_RS09555	0.25	+1.6
2,152,021	+		DDA3937_RS09555	0.26	+0.8
2,152,021	+		DDA3937_RS09555	0.26	-1.2
2,152,022	-		DDA3937_RS09555	0.26	-2.0
2,152,030	-		DDA3937_RS09555	0.29	+2.0
2,152,030	-		DDA3937_RS09555	0.29	-1.4
2,152,030	-		DDA3937_RS09555	0.29	+2.0
2,152,033	+		DDA3937_RS09555	0.30	-0.1
2,152,033	+		DDA3937_RS09555	0.30	-0.7
2,152,033	+		DDA3937_RS09555	0.30	-1.8
2,152,034	-		DDA3937_RS09555	0.30	-1.2
2,152,034	-		DDA3937_RS09555	0.30	-1.8
2,152,034	-		DDA3937_RS09555	0.30	-1.6
2,152,034	-		DDA3937_RS09555	0.30	-3.0
2,152,047	-		DDA3937_RS09555	0.34	-2.0
2,152,047	-		DDA3937_RS09555	0.34	-0.8
2,152,067	-		DDA3937_RS09555	0.40	+2.0
2,152,094	+		DDA3937_RS09555	0.49	-0.2
2,152,095	-		DDA3937_RS09555	0.49	+0.4
2,152,095	-		DDA3937_RS09555	0.49	-0.8
2,152,100	-		DDA3937_RS09555	0.50	-1.2
2,152,126	+		DDA3937_RS09555	0.59	+2.2
2,152,127	-		DDA3937_RS09555	0.59	-2.2
2,152,127	-		DDA3937_RS09555	0.59	+0.5
2,152,127	-		DDA3937_RS09555	0.59	-1.2
2,152,127	-		DDA3937_RS09555	0.59	-2.0
2,152,136	+		DDA3937_RS09555	0.62	+0.9
2,152,136	+		DDA3937_RS09555	0.62	+1.3
2,152,137	-		DDA3937_RS09555	0.62	-2.7
2,152,164	-		DDA3937_RS09555	0.70	-1.8
2,152,240	+				-1.2
2,152,240	+				-1.2
2,152,241	-				+0.9
2,152,241	-				+1.6