Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09475

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,134,228	+				-1.8
2,134,228	+				-0.0
2,134,228	+				+1.0
2,134,228	+				+1.7
2,134,228	+				+0.8
2,134,229	-				-1.1
2,134,229	-				+0.4
2,134,258	-				-3.6
2,134,361	+		DDA3937_RS09470	0.12	+1.6
2,134,362	-		DDA3937_RS09470	0.12	-1.3
2,134,385	-		DDA3937_RS09470	0.14	-1.4
2,134,385	-		DDA3937_RS09470	0.14	-1.3
2,134,409	-		DDA3937_RS09470	0.17	-1.4
2,134,448	+		DDA3937_RS09470	0.21	-1.4
2,134,449	-		DDA3937_RS09470	0.21	+0.9
2,134,449	-		DDA3937_RS09470	0.21	-3.3
2,134,451	-		DDA3937_RS09470	0.21	-3.4
2,134,451	-		DDA3937_RS09470	0.21	+2.1
2,134,508	+		DDA3937_RS09470	0.27	+0.4
2,134,508	+		DDA3937_RS09470	0.27	-0.4
2,134,508	+		DDA3937_RS09470	0.27	-0.7
2,134,509	-		DDA3937_RS09470	0.27	+0.1
2,134,509	-		DDA3937_RS09470	0.27	+0.2
2,134,509	-		DDA3937_RS09470	0.27	-1.7
2,134,535	+		DDA3937_RS09470	0.30	-1.9
2,134,536	-		DDA3937_RS09470	0.30	-1.6
2,134,536	-		DDA3937_RS09470	0.30	-1.0
2,134,536	-		DDA3937_RS09470	0.30	-0.2
2,134,547	+		DDA3937_RS09470	0.31	+0.5
2,134,579	+		DDA3937_RS09470	0.35	-2.8
2,134,580	-		DDA3937_RS09470	0.35	+1.8
2,134,580	-		DDA3937_RS09470	0.35	+0.5
2,134,584	+		DDA3937_RS09470	0.35	-1.8
2,134,585	-		DDA3937_RS09470	0.35	-3.1
2,134,585	-		DDA3937_RS09470	0.35	-0.6
2,134,585	-		DDA3937_RS09470	0.35	-2.6
2,134,585	-		DDA3937_RS09470	0.35	-0.8
2,134,651	+		DDA3937_RS09470	0.42	-1.8
2,134,651	+		DDA3937_RS09470	0.42	-1.0
2,134,652	-		DDA3937_RS09470	0.42	+0.2
2,134,652	-		DDA3937_RS09470	0.42	-1.0
2,134,652	-		DDA3937_RS09470	0.42	+0.3
2,134,706	+		DDA3937_RS09470	0.48	-3.9
2,134,798	+		DDA3937_RS09470	0.57	+1.1
2,134,814	+		DDA3937_RS09470	0.59	+0.7
2,134,814	+		DDA3937_RS09470	0.59	-1.3
2,134,814	+		DDA3937_RS09470	0.59	+0.2
2,134,814	+		DDA3937_RS09470	0.59	-1.6
2,134,814	+		DDA3937_RS09470	0.59	-1.1
2,134,814	+		DDA3937_RS09470	0.59	-2.4
2,134,814	+		DDA3937_RS09470	0.59	-1.3
2,134,814	+		DDA3937_RS09470	0.59	-2.1
2,134,814	+		DDA3937_RS09470	0.59	-1.6
2,134,814	+		DDA3937_RS09470	0.59	-1.8
2,134,815	-		DDA3937_RS09470	0.59	-3.1
2,134,815	-				-0.4
2,134,815	-		DDA3937_RS09470	0.59	-3.3
2,134,815	-		DDA3937_RS09470	0.59	-1.0
2,134,815	-		DDA3937_RS09470	0.59	+0.9
2,134,829	+				+1.0
2,134,830	-		DDA3937_RS09470	0.61	-3.4
2,134,830	-		DDA3937_RS09470	0.61	-1.2
2,134,835	+		DDA3937_RS09470	0.61	-2.1
2,134,835	+		DDA3937_RS09470	0.61	+1.2
2,134,835	+		DDA3937_RS09470	0.61	-2.1
2,134,862	+		DDA3937_RS09470	0.64	-1.3
2,134,863	-		DDA3937_RS09470	0.64	-3.7
2,134,942	+		DDA3937_RS09470	0.72	-2.0
2,134,999	+		DDA3937_RS09470	0.78	-0.9
2,135,018	+		DDA3937_RS09470	0.80	-1.0
2,135,018	+		DDA3937_RS09470	0.80	-1.6
2,135,170	+				-2.7
2,135,182	+				-2.1
2,135,300	-		DDA3937_RS09475	0.11	+0.2
2,135,300	-		DDA3937_RS09475	0.11	-0.4
2,135,307	+		DDA3937_RS09475	0.12	+1.8
2,135,307	+		DDA3937_RS09475	0.12	-0.9
2,135,308	-		DDA3937_RS09475	0.12	-1.3
2,135,356	+		DDA3937_RS09475	0.18	-2.4
2,135,357	-		DDA3937_RS09475	0.18	-0.9
2,135,357	-		DDA3937_RS09475	0.18	-0.7
2,135,413	-		DDA3937_RS09475	0.25	+0.3
2,135,619	+		DDA3937_RS09475	0.49	+1.8
2,135,662	+		DDA3937_RS09475	0.54	-1.8
2,135,662	+		DDA3937_RS09475	0.54	-0.3
2,135,662	+		DDA3937_RS09475	0.54	-1.3
2,135,662	+		DDA3937_RS09475	0.54	+1.2
2,135,662	+		DDA3937_RS09475	0.54	+0.6
2,135,662	+		DDA3937_RS09475	0.54	-1.6
2,135,662	+		DDA3937_RS09475	0.54	-1.5
2,135,662	+		DDA3937_RS09475	0.54	-2.5
2,135,663	-		DDA3937_RS09475	0.54	-0.8
2,135,663	-		DDA3937_RS09475	0.54	-1.4
2,135,663	-		DDA3937_RS09475	0.54	+0.6
2,135,817	+		DDA3937_RS09475	0.73	-1.1
2,135,817	+		DDA3937_RS09475	0.73	-2.0
2,135,818	-		DDA3937_RS09475	0.73	-2.3
2,135,903	+		DDA3937_RS09475	0.83	+0.8
2,135,948	+		DDA3937_RS09475	0.88	-2.0
2,135,949	-		DDA3937_RS09475	0.88	+0.8
2,136,098	+				+0.8
2,136,098	+				-2.3
2,136,099	-				-1.3
2,136,139	+				+1.4
2,136,139	+				-0.4
2,136,139	+				+2.4
2,136,139	+				-0.2
2,136,140	-				+1.2
2,136,140	-				+0.7
2,136,140	-				-0.8
2,136,140	-				+1.0
2,136,140	-				-0.5
2,136,140	-				-0.8
2,136,140	-				-0.8
2,136,141	-				+2.3
2,136,145	-				-1.3
2,136,145	-				-1.8
2,136,266	-		DDA3937_RS09480	0.21	-1.4
2,136,438	+		DDA3937_RS09480	0.60	-0.0
2,136,438	+		DDA3937_RS09480	0.60	-3.1
2,136,438	+		DDA3937_RS09480	0.60	-1.0
2,136,438	+		DDA3937_RS09480	0.60	-1.6
2,136,438	+		DDA3937_RS09480	0.60	-0.4
2,136,439	-		DDA3937_RS09480	0.61	+0.9
2,136,439	-		DDA3937_RS09480	0.61	+0.9
2,136,439	-		DDA3937_RS09480	0.61	+1.0
2,136,439	-		DDA3937_RS09480	0.61	-2.3
2,136,439	-		DDA3937_RS09480	0.61	+1.2
2,136,439	-		DDA3937_RS09480	0.61	-1.6
2,136,439	-				-0.4
2,136,439	-		DDA3937_RS09480	0.61	+0.1
2,136,610	-				-2.8
2,136,617	-				+0.1
2,136,630	-				+0.4
2,136,637	-				-0.3
2,136,649	+				-1.0
2,136,671	+				+1.6
2,136,672	-				-1.4
2,136,672	-				-1.8
2,136,733	+				-1.6
2,136,734	-				-0.8
2,136,736	-				+0.6
2,136,798	+				-0.4
2,137,011	+		DDA3937_RS09485	0.26	-0.4
2,137,017	-		DDA3937_RS09485	0.26	+1.6
2,137,017	-		DDA3937_RS09485	0.26	+1.3