Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09465

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,132,147	+		DDA3937_RS09460	0.25	+0.2
2,132,249	+		DDA3937_RS09460	0.34	-0.5
2,132,249	+		DDA3937_RS09460	0.34	-0.8
2,132,250	-		DDA3937_RS09460	0.34	-0.4
2,132,253	+		DDA3937_RS09460	0.34	-0.8
2,132,253	+		DDA3937_RS09460	0.34	-1.0
2,132,253	+		DDA3937_RS09460	0.34	+0.3
2,132,254	-		DDA3937_RS09460	0.34	-1.5
2,132,265	+		DDA3937_RS09460	0.35	+1.9
2,132,293	-		DDA3937_RS09460	0.38	-1.1
2,132,427	+		DDA3937_RS09460	0.50	+0.9
2,132,445	+		DDA3937_RS09460	0.52	-1.8
2,132,445	+		DDA3937_RS09460	0.52	-3.1
2,132,445	+		DDA3937_RS09460	0.52	+1.8
2,132,446	-		DDA3937_RS09460	0.52	-1.0
2,132,446	-		DDA3937_RS09460	0.52	-3.1
2,132,446	-		DDA3937_RS09460	0.52	-1.4
2,132,484	+		DDA3937_RS09460	0.55	-2.7
2,132,536	-		DDA3937_RS09460	0.60	-1.3
2,132,536	-		DDA3937_RS09460	0.60	+0.3
2,132,553	+		DDA3937_RS09460	0.61	-0.8
2,132,553	+		DDA3937_RS09460	0.61	-2.1
2,132,554	-		DDA3937_RS09460	0.61	-1.3
2,132,587	+		DDA3937_RS09460	0.64	-0.0
2,132,588	-		DDA3937_RS09460	0.65	-0.4
2,132,588	-		DDA3937_RS09460	0.65	-1.4
2,132,591	+		DDA3937_RS09460	0.65	-0.3
2,132,654	-		DDA3937_RS09460	0.70	-1.1
2,132,654	-		DDA3937_RS09460	0.70	+1.9
2,132,664	+		DDA3937_RS09460	0.71	+0.6
2,132,665	-		DDA3937_RS09460	0.71	-1.3
2,132,665	-		DDA3937_RS09460	0.71	-0.8
2,132,665	-		DDA3937_RS09460	0.71	-1.8
2,132,665	-				-0.4
2,132,665	-		DDA3937_RS09460	0.71	+1.8
2,132,745	+		DDA3937_RS09460	0.79	-2.0
2,132,745	+		DDA3937_RS09460	0.79	-0.4
2,132,760	+				+3.1
2,132,760	+		DDA3937_RS09460	0.80	+0.2
2,132,760	+		DDA3937_RS09460	0.80	+1.2
2,132,760	+		DDA3937_RS09460	0.80	+3.2
2,132,761	-		DDA3937_RS09460	0.80	-1.9
2,132,761	-		DDA3937_RS09460	0.80	-0.0
2,132,761	-		DDA3937_RS09460	0.80	-0.4
2,132,761	-				+0.6
2,132,761	-		DDA3937_RS09460	0.80	-1.1
2,132,761	-		DDA3937_RS09460	0.80	-1.9
2,132,761	-		DDA3937_RS09460	0.80	+0.3
2,132,795	+		DDA3937_RS09460	0.83	-0.8
2,132,805	+		DDA3937_RS09460	0.84	-2.2
2,132,805	+		DDA3937_RS09460	0.84	+0.1
2,132,805	+		DDA3937_RS09460	0.84	+0.4
2,132,805	+		DDA3937_RS09460	0.84	-1.6
2,132,805	+		DDA3937_RS09460	0.84	-1.7
2,132,805	+		DDA3937_RS09460	0.84	-1.0
2,132,805	+		DDA3937_RS09460	0.84	-0.9
2,132,806	-		DDA3937_RS09460	0.84	+1.8
2,132,806	-		DDA3937_RS09460	0.84	-0.4
2,132,806	-		DDA3937_RS09460	0.84	+0.7
2,132,808	+		DDA3937_RS09460	0.84	-1.0
2,132,808	+		DDA3937_RS09460	0.84	-0.0
2,132,809	-		DDA3937_RS09460	0.84	-2.7
2,132,820	-		DDA3937_RS09460	0.85	+2.4
2,132,820	-		DDA3937_RS09460	0.85	+0.1
2,132,874	+				-1.1
2,132,874	+				-0.9
2,132,874	+				-1.4
2,132,875	-				-0.0
2,132,946	-				+1.1
2,132,965	+				-0.0
2,132,966	-				-2.4
2,132,980	-				+0.9
2,133,038	+				-0.1
2,133,038	+				+1.3
2,133,038	+				-1.0
2,133,038	+				+0.9
2,133,039	-				-1.4
2,133,093	+				-2.4
2,133,093	+				-2.4
2,133,093	+				-4.0
2,133,093	+				-1.4
2,133,093	+				-0.4
2,133,093	+				+1.0
2,133,093	+				-1.8
2,133,094	-				-3.0
2,133,094	-				+0.2
2,133,094	-				-1.6
2,133,096	+				-0.4
2,133,096	+				+2.2
2,133,097	-				-1.1
2,133,097	-				-0.5
2,133,097	-				-1.0
2,133,097	-				+1.1
2,133,097	-				+0.7
2,133,183	+				+0.7
2,133,225	+		DDA3937_RS09465	0.11	-2.2
2,133,225	+		DDA3937_RS09465	0.11	-2.4
2,133,225	+		DDA3937_RS09465	0.11	-1.0
2,133,225	+		DDA3937_RS09465	0.11	-0.3
2,133,225	+		DDA3937_RS09465	0.11	-1.3
2,133,225	+		DDA3937_RS09465	0.11	-0.4
2,133,225	+		DDA3937_RS09465	0.11	-2.3
2,133,225	+		DDA3937_RS09465	0.11	-0.2
2,133,225	+		DDA3937_RS09465	0.11	-1.0
2,133,226	-		DDA3937_RS09465	0.11	-1.2
2,133,226	-		DDA3937_RS09465	0.11	-0.9
2,133,226	-		DDA3937_RS09465	0.11	-0.2
2,133,226	-		DDA3937_RS09465	0.11	-0.4
2,133,226	-		DDA3937_RS09465	0.11	+1.1
2,133,226	-		DDA3937_RS09465	0.11	-1.6
2,133,226	-		DDA3937_RS09465	0.11	-1.7
2,133,226	-		DDA3937_RS09465	0.11	-0.8
2,133,226	-		DDA3937_RS09465	0.11	-0.0
2,133,226	-		DDA3937_RS09465	0.11	-2.7
2,133,228	-		DDA3937_RS09465	0.11	-1.3
2,133,287	+		DDA3937_RS09465	0.17	-1.0
2,133,311	+		DDA3937_RS09465	0.19	-1.3
2,133,311	+		DDA3937_RS09465	0.19	-1.0
2,133,312	-		DDA3937_RS09465	0.19	-2.8
2,133,432	-		DDA3937_RS09465	0.29	-0.8
2,133,508	+		DDA3937_RS09465	0.36	-3.0
2,133,508	+		DDA3937_RS09465	0.36	-2.1
2,133,509	-		DDA3937_RS09465	0.36	+0.1
2,133,509	-		DDA3937_RS09465	0.36	-1.6
2,133,659	+		DDA3937_RS09465	0.49	-1.3
2,133,810	+		DDA3937_RS09465	0.63	-1.0
2,133,810	+		DDA3937_RS09465	0.63	-0.5
2,133,811	-		DDA3937_RS09465	0.63	-3.0
2,133,860	+		DDA3937_RS09465	0.67	-0.4
2,133,860	+		DDA3937_RS09465	0.67	+0.1
2,133,860	+		DDA3937_RS09465	0.67	+0.3
2,133,861	-		DDA3937_RS09465	0.67	-1.6
2,133,861	-		DDA3937_RS09465	0.67	-2.8
2,133,941	+		DDA3937_RS09465	0.74	+1.6
2,133,979	-		DDA3937_RS09465	0.78	-1.0
2,134,072	-		DDA3937_RS09465	0.86	+1.2
2,134,089	-		DDA3937_RS09465	0.87	-1.3
2,134,089	-		DDA3937_RS09465	0.87	-1.8
2,134,092	+		DDA3937_RS09465	0.88	-1.0
2,134,092	+		DDA3937_RS09465	0.88	-1.3
2,134,092	+		DDA3937_RS09465	0.88	-2.1
2,134,092	+		DDA3937_RS09465	0.88	-1.7
2,134,092	+		DDA3937_RS09465	0.88	-1.8
2,134,092	+		DDA3937_RS09465	0.88	-0.8
2,134,093	-		DDA3937_RS09465	0.88	-2.8
2,134,093	-		DDA3937_RS09465	0.88	-1.4
2,134,093	-		DDA3937_RS09465	0.88	-3.1
2,134,093	-		DDA3937_RS09465	0.88	-2.4
2,134,093	-		DDA3937_RS09465	0.88	+1.7
2,134,093	-		DDA3937_RS09465	0.88	-2.9
2,134,228	+				-1.8
2,134,228	+				-0.0
2,134,228	+				+1.0
2,134,228	+				+1.7
2,134,228	+				+0.8
2,134,229	-				-1.1
2,134,229	-				+0.4
2,134,258	-				-3.6
2,134,361	+		DDA3937_RS09470	0.12	+1.6
2,134,362	-		DDA3937_RS09470	0.12	-1.3
2,134,385	-		DDA3937_RS09470	0.14	-1.4
2,134,385	-		DDA3937_RS09470	0.14	-1.3
2,134,409	-		DDA3937_RS09470	0.17	-1.4
2,134,448	+		DDA3937_RS09470	0.21	-1.4
2,134,449	-		DDA3937_RS09470	0.21	+0.9
2,134,449	-		DDA3937_RS09470	0.21	-3.3
2,134,451	-		DDA3937_RS09470	0.21	-3.4
2,134,451	-		DDA3937_RS09470	0.21	+2.1
2,134,508	+		DDA3937_RS09470	0.27	+0.4
2,134,508	+		DDA3937_RS09470	0.27	-0.4
2,134,508	+		DDA3937_RS09470	0.27	-0.7
2,134,509	-		DDA3937_RS09470	0.27	+0.1
2,134,509	-		DDA3937_RS09470	0.27	+0.2
2,134,509	-		DDA3937_RS09470	0.27	-1.7
2,134,535	+		DDA3937_RS09470	0.30	-1.9
2,134,536	-		DDA3937_RS09470	0.30	-1.6
2,134,536	-		DDA3937_RS09470	0.30	-1.0
2,134,536	-		DDA3937_RS09470	0.30	-0.2
2,134,547	+		DDA3937_RS09470	0.31	+0.5
2,134,579	+		DDA3937_RS09470	0.35	-2.8
2,134,580	-		DDA3937_RS09470	0.35	+1.8
2,134,580	-		DDA3937_RS09470	0.35	+0.5
2,134,584	+		DDA3937_RS09470	0.35	-1.8
2,134,585	-		DDA3937_RS09470	0.35	-3.1
2,134,585	-		DDA3937_RS09470	0.35	-0.6
2,134,585	-		DDA3937_RS09470	0.35	-2.6
2,134,585	-		DDA3937_RS09470	0.35	-0.8
2,134,651	+		DDA3937_RS09470	0.42	-1.8
2,134,651	+		DDA3937_RS09470	0.42	-1.0
2,134,652	-		DDA3937_RS09470	0.42	+0.2
2,134,652	-		DDA3937_RS09470	0.42	-1.0
2,134,652	-		DDA3937_RS09470	0.42	+0.3
2,134,706	+		DDA3937_RS09470	0.48	-3.9
2,134,798	+		DDA3937_RS09470	0.57	+1.1
2,134,814	+		DDA3937_RS09470	0.59	+0.7
2,134,814	+		DDA3937_RS09470	0.59	-1.3
2,134,814	+		DDA3937_RS09470	0.59	+0.2
2,134,814	+		DDA3937_RS09470	0.59	-1.6
2,134,814	+		DDA3937_RS09470	0.59	-1.1
2,134,814	+		DDA3937_RS09470	0.59	-2.4
2,134,814	+		DDA3937_RS09470	0.59	-1.3
2,134,814	+		DDA3937_RS09470	0.59	-2.1
2,134,814	+		DDA3937_RS09470	0.59	-1.6
2,134,814	+		DDA3937_RS09470	0.59	-1.8
2,134,815	-		DDA3937_RS09470	0.59	-3.1
2,134,815	-				-0.4
2,134,815	-		DDA3937_RS09470	0.59	-3.3
2,134,815	-		DDA3937_RS09470	0.59	-1.0
2,134,815	-		DDA3937_RS09470	0.59	+0.9
2,134,829	+				+1.0
2,134,830	-		DDA3937_RS09470	0.61	-3.4
2,134,830	-		DDA3937_RS09470	0.61	-1.2
2,134,835	+		DDA3937_RS09470	0.61	-2.1
2,134,835	+		DDA3937_RS09470	0.61	+1.2
2,134,835	+		DDA3937_RS09470	0.61	-2.1
2,134,862	+		DDA3937_RS09470	0.64	-1.3
2,134,863	-		DDA3937_RS09470	0.64	-3.7
2,134,942	+		DDA3937_RS09470	0.72	-2.0
2,134,999	+		DDA3937_RS09470	0.78	-0.9
2,135,018	+		DDA3937_RS09470	0.80	-1.0
2,135,018	+		DDA3937_RS09470	0.80	-1.6
2,135,170	+				-2.7
2,135,182	+				-2.1