Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09295

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,089,121	+				-0.7
2,089,122	-				-0.6
2,089,125	-				+0.1
2,089,171	+				+0.4
2,089,180	+				+4.1
2,089,181	-		DDA3937_RS09285	0.11	-0.5
2,089,271	+		DDA3937_RS09285	0.49	-1.6
2,089,271	+		DDA3937_RS09285	0.49	-0.9
2,089,326	+		DDA3937_RS09285	0.72	-0.5
2,089,326	+		DDA3937_RS09285	0.72	-1.6
2,089,327	-		DDA3937_RS09285	0.72	-0.8
2,089,355	+		DDA3937_RS09285	0.84	+0.8
2,089,355	+		DDA3937_RS09285	0.84	-0.6
2,089,356	-		DDA3937_RS09285	0.84	-0.6
2,089,356	-		DDA3937_RS09285	0.84	-1.6
2,089,518	-		DDA3937_RS09290	0.20	-0.3
2,089,665	+		DDA3937_RS09290	0.39	-0.6
2,089,666	-		DDA3937_RS09290	0.39	+0.2
2,089,666	-		DDA3937_RS09290	0.39	-0.8
2,089,666	-		DDA3937_RS09290	0.39	+0.4
2,089,666	-		DDA3937_RS09290	0.39	-1.3
2,089,666	-		DDA3937_RS09290	0.39	+1.9
2,089,685	+		DDA3937_RS09290	0.42	-2.3
2,089,696	+		DDA3937_RS09290	0.44	+0.5
2,089,764	+		DDA3937_RS09290	0.53	+0.2
2,089,765	-		DDA3937_RS09290	0.53	+0.9
2,089,765	-		DDA3937_RS09290	0.53	+1.6
2,089,765	-		DDA3937_RS09290	0.53	-1.5
2,089,781	+		DDA3937_RS09290	0.55	-0.9
2,089,781	+		DDA3937_RS09290	0.55	+1.1
2,089,782	-		DDA3937_RS09290	0.55	-1.8
2,089,910	+		DDA3937_RS09290	0.72	+0.4
2,089,940	+		DDA3937_RS09290	0.76	-0.5
2,089,940	+		DDA3937_RS09290	0.76	-3.0
2,090,230	+		DDA3937_RS09295	0.11	-1.5
2,090,231	-		DDA3937_RS09295	0.11	-2.3
2,090,231	-		DDA3937_RS09295	0.11	+0.0
2,090,390	+		DDA3937_RS09295	0.26	-0.6
2,090,392	+		DDA3937_RS09295	0.26	-1.3
2,090,392	+		DDA3937_RS09295	0.26	-0.5
2,090,393	-		DDA3937_RS09295	0.26	+1.6
2,090,447	+		DDA3937_RS09295	0.31	-2.3
2,090,448	-		DDA3937_RS09295	0.31	-0.0
2,090,448	-		DDA3937_RS09295	0.31	-1.5
2,090,482	+		DDA3937_RS09295	0.34	+0.7
2,090,482	+		DDA3937_RS09295	0.34	-1.5
2,090,483	-		DDA3937_RS09295	0.34	-0.8
2,090,485	+		DDA3937_RS09295	0.35	-0.5
2,090,604	-		DDA3937_RS09295	0.46	-0.3
2,090,627	+		DDA3937_RS09295	0.48	-0.7
2,090,627	+		DDA3937_RS09295	0.48	+0.4
2,090,627	+		DDA3937_RS09295	0.48	+0.9
2,090,627	+		DDA3937_RS09295	0.48	+0.3
2,090,628	-		DDA3937_RS09295	0.48	-0.8
2,090,628	-		DDA3937_RS09295	0.48	-1.8
2,090,628	-		DDA3937_RS09295	0.48	-1.3
2,090,628	-		DDA3937_RS09295	0.48	-2.4
2,090,680	+		DDA3937_RS09295	0.53	+1.9
2,090,681	-		DDA3937_RS09295	0.53	-1.6
2,090,714	+		DDA3937_RS09295	0.56	+0.7
2,090,715	-		DDA3937_RS09295	0.56	-1.0
2,090,783	+		DDA3937_RS09295	0.62	+1.3
2,090,783	+		DDA3937_RS09295	0.62	-1.3
2,090,784	-		DDA3937_RS09295	0.62	-3.0
2,090,784	-		DDA3937_RS09295	0.62	-2.8
2,090,801	+		DDA3937_RS09295	0.64	-1.2
2,090,816	+		DDA3937_RS09295	0.65	-1.9
2,090,817	-		DDA3937_RS09295	0.65	-4.0
2,090,822	-		DDA3937_RS09295	0.66	+0.5
2,090,822	-		DDA3937_RS09295	0.66	-0.3
2,090,842	+		DDA3937_RS09295	0.68	-0.7
2,090,843	-		DDA3937_RS09295	0.68	-0.6
2,090,843	-		DDA3937_RS09295	0.68	-0.4
2,090,886	+		DDA3937_RS09295	0.72	-4.3
2,090,886	+		DDA3937_RS09295	0.72	+0.0
2,090,886	+		DDA3937_RS09295	0.72	-2.0
2,090,886	+		DDA3937_RS09295	0.72	+0.3
2,090,886	+		DDA3937_RS09295	0.72	+0.8
2,090,887	-		DDA3937_RS09295	0.72	-3.5
2,090,895	-		DDA3937_RS09295	0.73	-2.2
2,090,938	+		DDA3937_RS09295	0.77	+1.4
2,090,939	-		DDA3937_RS09295	0.77	-2.1
2,090,951	+		DDA3937_RS09295	0.78	-1.1
2,090,951	+		DDA3937_RS09295	0.78	+1.0
2,090,952	-		DDA3937_RS09295	0.78	-1.4
2,090,952	-		DDA3937_RS09295	0.78	-0.9
2,090,952	-		DDA3937_RS09295	0.78	+0.2
2,090,954	+		DDA3937_RS09295	0.78	-1.5
2,090,954	+		DDA3937_RS09295	0.78	-0.8
2,090,954	+		DDA3937_RS09295	0.78	+0.2
2,090,954	+		DDA3937_RS09295	0.78	-2.1
2,090,954	+		DDA3937_RS09295	0.78	-0.6
2,090,954	+		DDA3937_RS09295	0.78	-2.5
2,090,955	-		DDA3937_RS09295	0.78	-2.4
2,090,986	+		DDA3937_RS09295	0.81	-1.5
2,091,031	+		DDA3937_RS09295	0.85	+3.5
2,091,032	-		DDA3937_RS09295	0.85	-2.2
2,091,032	-		DDA3937_RS09295	0.85	+0.5
2,091,032	-		DDA3937_RS09295	0.85	-0.4
2,091,089	+				+0.5
2,091,093	+				+0.5
2,091,093	+				-0.0
2,091,094	-				+0.7
2,091,262	+				+1.7
2,091,262	+				-0.3
2,091,263	-				+0.5
2,091,393	+				+2.1
2,091,393	+				-0.3
2,091,393	+				-1.1
2,091,394	-				-1.6
2,091,394	-				+1.5
2,091,394	-				+0.8
2,091,437	-				-1.1
2,091,447	+				+0.1
2,091,447	+				-0.5
2,091,448	-				+0.8
2,091,559	+		DDA3937_RS09300	0.18	-2.6
2,091,560	-		DDA3937_RS09300	0.18	-1.8
2,091,561	+		DDA3937_RS09300	0.18	-0.3
2,091,561	+		DDA3937_RS09300	0.18	+0.1
2,091,562	-		DDA3937_RS09300	0.19	-1.8
2,091,562	-		DDA3937_RS09300	0.19	-0.7
2,091,562	-		DDA3937_RS09300	0.19	+0.9
2,091,562	-		DDA3937_RS09300	0.19	+0.5
2,091,747	+		DDA3937_RS09300	0.37	-2.2
2,091,747	+		DDA3937_RS09300	0.37	-1.6
2,091,748	-		DDA3937_RS09300	0.37	+0.9
2,091,778	+		DDA3937_RS09300	0.40	-0.5
2,091,778	+		DDA3937_RS09300	0.40	-0.2
2,091,778	+		DDA3937_RS09300	0.40	+0.0
2,091,778	+		DDA3937_RS09300	0.40	-2.7
2,091,778	+		DDA3937_RS09300	0.40	-1.5
2,091,778	+		DDA3937_RS09300	0.40	+0.7
2,091,778	+		DDA3937_RS09300	0.40	-3.2
2,091,778	+				+3.0
2,091,779	-		DDA3937_RS09300	0.40	-1.3
2,091,779	-		DDA3937_RS09300	0.40	-0.7
2,091,779	-		DDA3937_RS09300	0.40	-0.8
2,091,779	-		DDA3937_RS09300	0.40	-1.3
2,091,779	-		DDA3937_RS09300	0.40	-2.3
2,091,779	-		DDA3937_RS09300	0.40	-0.7
2,091,779	-		DDA3937_RS09300	0.40	-2.2
2,091,779	-		DDA3937_RS09300	0.40	+2.3
2,091,780	+		DDA3937_RS09300	0.40	-2.8
2,091,780	+		DDA3937_RS09300	0.40	-1.6
2,091,780	+		DDA3937_RS09300	0.40	-3.0
2,091,780	+		DDA3937_RS09300	0.40	-0.8
2,091,780	+		DDA3937_RS09300	0.40	-0.3
2,091,780	+		DDA3937_RS09300	0.40	-0.8
2,091,780	+		DDA3937_RS09300	0.40	+0.8
2,091,780	+		DDA3937_RS09300	0.40	-2.1
2,091,780	+		DDA3937_RS09300	0.40	-0.8
2,091,780	+		DDA3937_RS09300	0.40	-2.8
2,091,780	+		DDA3937_RS09300	0.40	+2.2
2,091,780	+		DDA3937_RS09300	0.40	-2.5
2,091,780	+		DDA3937_RS09300	0.40	-1.4
2,091,780	+		DDA3937_RS09300	0.40	+2.0
2,091,780	+		DDA3937_RS09300	0.40	-0.7
2,091,780	+		DDA3937_RS09300	0.40	-1.8
2,091,780	+		DDA3937_RS09300	0.40	+1.7
2,091,780	+		DDA3937_RS09300	0.40	+0.0
2,091,780	+		DDA3937_RS09300	0.40	-3.4
2,091,780	+		DDA3937_RS09300	0.40	+0.1
2,091,780	+		DDA3937_RS09300	0.40	+1.3
2,091,780	+		DDA3937_RS09300	0.40	+0.8
2,091,780	+		DDA3937_RS09300	0.40	+1.5
2,091,780	+		DDA3937_RS09300	0.40	-0.5
2,091,780	+		DDA3937_RS09300	0.40	-1.0
2,091,780	+		DDA3937_RS09300	0.40	+0.5
2,091,780	+		DDA3937_RS09300	0.40	+1.8
2,091,780	+		DDA3937_RS09300	0.40	-1.2
2,091,780	+		DDA3937_RS09300	0.40	-1.3
2,091,780	+		DDA3937_RS09300	0.40	+0.8
2,091,780	+		DDA3937_RS09300	0.40	-0.7
2,091,780	+		DDA3937_RS09300	0.40	+0.5
2,091,780	+		DDA3937_RS09300	0.40	-1.9
2,091,780	+		DDA3937_RS09300	0.40	-3.0
2,091,780	+		DDA3937_RS09300	0.40	+1.3
2,091,780	+		DDA3937_RS09300	0.40	-0.2
2,091,780	+		DDA3937_RS09300	0.40	+1.5
2,091,780	+		DDA3937_RS09300	0.40	-2.5
2,091,780	+		DDA3937_RS09300	0.40	-0.5
2,091,780	+		DDA3937_RS09300	0.40	+1.2
2,091,780	+				+2.0
2,091,780	+		DDA3937_RS09300	0.40	-3.3
2,091,780	+		DDA3937_RS09300	0.40	+2.5
2,091,780	+		DDA3937_RS09300	0.40	+0.2
2,091,780	+		DDA3937_RS09300	0.40	-2.3
2,091,780	+		DDA3937_RS09300	0.40	-1.8
2,091,781	-		DDA3937_RS09300	0.41	-0.5
2,091,781	-		DDA3937_RS09300	0.41	+1.0
2,091,781	-		DDA3937_RS09300	0.41	-2.6
2,091,781	-		DDA3937_RS09300	0.41	+1.5
2,091,781	-		DDA3937_RS09300	0.41	-1.6
2,091,781	-		DDA3937_RS09300	0.41	-0.5
2,091,781	-		DDA3937_RS09300	0.41	-1.9
2,091,781	-		DDA3937_RS09300	0.41	-1.5
2,091,781	-		DDA3937_RS09300	0.41	-1.3
2,091,781	-		DDA3937_RS09300	0.41	+0.2
2,091,781	-		DDA3937_RS09300	0.41	-0.0
2,091,781	-		DDA3937_RS09300	0.41	-1.6
2,091,781	-		DDA3937_RS09300	0.41	-0.5
2,091,781	-		DDA3937_RS09300	0.41	+1.1
2,091,781	-		DDA3937_RS09300	0.41	-1.2
2,091,781	-		DDA3937_RS09300	0.41	+0.2
2,091,781	-		DDA3937_RS09300	0.41	-1.4
2,091,781	-		DDA3937_RS09300	0.41	-1.8
2,091,781	-		DDA3937_RS09300	0.41	+0.6
2,091,781	-		DDA3937_RS09300	0.41	-1.3
2,091,781	-		DDA3937_RS09300	0.41	+2.5
2,091,781	-		DDA3937_RS09300	0.41	-2.4
2,091,781	-		DDA3937_RS09300	0.41	-0.5
2,091,781	-		DDA3937_RS09300	0.41	-2.4
2,091,781	-		DDA3937_RS09300	0.41	-3.2
2,091,781	-		DDA3937_RS09300	0.41	+0.4
2,091,781	-		DDA3937_RS09300	0.41	-1.0
2,091,781	-		DDA3937_RS09300	0.41	-1.3
2,091,781	-				+0.5
2,091,781	-		DDA3937_RS09300	0.41	-1.8
2,091,781	-		DDA3937_RS09300	0.41	-0.6
2,091,781	-		DDA3937_RS09300	0.41	+1.4
2,091,781	-		DDA3937_RS09300	0.41	+2.7
2,091,781	-		DDA3937_RS09300	0.41	-1.0
2,091,781	-		DDA3937_RS09300	0.41	+0.7
2,091,781	-		DDA3937_RS09300	0.41	+1.5
2,091,781	-		DDA3937_RS09300	0.41	+1.1
2,091,781	-		DDA3937_RS09300	0.41	-1.5
2,091,781	-		DDA3937_RS09300	0.41	-0.3
2,091,781	-		DDA3937_RS09300	0.41	-0.8
2,091,781	-		DDA3937_RS09300	0.41	-0.1
2,091,781	-		DDA3937_RS09300	0.41	-1.8
2,091,781	-		DDA3937_RS09300	0.41	+1.7
2,091,782	+		DDA3937_RS09300	0.41	-2.5
2,091,782	+		DDA3937_RS09300	0.41	-1.2
2,091,782	+		DDA3937_RS09300	0.41	-0.5
2,091,782	+		DDA3937_RS09300	0.41	-3.3
2,091,782	+		DDA3937_RS09300	0.41	-0.6
2,091,782	+		DDA3937_RS09300	0.41	-2.3
2,091,782	+		DDA3937_RS09300	0.41	-1.0
2,091,782	+		DDA3937_RS09300	0.41	-0.2
2,091,782	+		DDA3937_RS09300	0.41	-1.3
2,091,783	-		DDA3937_RS09300	0.41	+0.9
2,091,783	-		DDA3937_RS09300	0.41	-0.1
2,091,783	-		DDA3937_RS09300	0.41	-0.8
2,091,783	-		DDA3937_RS09300	0.41	-0.0
2,091,783	-		DDA3937_RS09300	0.41	+1.2
2,091,783	-		DDA3937_RS09300	0.41	-1.1
2,091,783	-		DDA3937_RS09300	0.41	-0.0
2,091,783	-		DDA3937_RS09300	0.41	+0.7
2,091,783	-		DDA3937_RS09300	0.41	+0.1
2,091,783	-		DDA3937_RS09300	0.41	+0.7
2,091,783	-		DDA3937_RS09300	0.41	+1.4
2,091,788	+		DDA3937_RS09300	0.41	+1.5
2,091,789	-		DDA3937_RS09300	0.41	-1.5
2,091,789	-		DDA3937_RS09300	0.41	+0.0
2,091,789	-		DDA3937_RS09300	0.41	+1.2
2,091,898	+		DDA3937_RS09300	0.52	+1.0
2,091,898	+		DDA3937_RS09300	0.52	-1.3
2,091,898	+		DDA3937_RS09300	0.52	-1.4
2,091,899	-		DDA3937_RS09300	0.52	+1.0
2,091,899	-		DDA3937_RS09300	0.52	-0.2
2,091,921	+		DDA3937_RS09300	0.55	+1.1
2,091,927	+		DDA3937_RS09300	0.55	+2.2
2,091,927	+		DDA3937_RS09300	0.55	-0.7
2,091,927	+		DDA3937_RS09300	0.55	-1.5
2,091,928	-		DDA3937_RS09300	0.55	+0.3
2,091,928	-		DDA3937_RS09300	0.55	-1.6
2,091,928	-		DDA3937_RS09300	0.55	-2.5
2,091,928	-		DDA3937_RS09300	0.55	+0.8
2,091,928	-		DDA3937_RS09300	0.55	+2.7