Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,023,966	-				+0.4
2,023,967	+				-2.2
2,024,225	+				-2.8
2,024,225	+				-2.6
2,024,226	-				+2.7
2,024,226	-				+1.5
2,024,269	+				+0.5
2,024,381	+		DDA3937_RS08975	0.15	-0.5
2,024,381	+		DDA3937_RS08975	0.15	+0.6
2,024,494	+		DDA3937_RS08975	0.47	+1.4
2,024,519	+		DDA3937_RS08975	0.54	-1.7
2,024,519	+		DDA3937_RS08975	0.54	-1.3
2,024,519	+		DDA3937_RS08975	0.54	+0.5
2,024,520	-		DDA3937_RS08975	0.54	-1.5
2,024,578	-		DDA3937_RS08975	0.71	-2.5
2,024,578	-		DDA3937_RS08975	0.71	+0.2
2,024,632	-		DDA3937_RS08975	0.86	-1.7
2,024,641	+		DDA3937_RS08975	0.89	-1.1
2,024,641	+		DDA3937_RS08975	0.89	-1.8
2,024,641	+		DDA3937_RS08975	0.89	-2.5
2,024,641	+		DDA3937_RS08975	0.89	-0.1
2,024,641	+		DDA3937_RS08975	0.89	-0.8
2,024,642	-		DDA3937_RS08975	0.89	-1.1
2,024,642	-		DDA3937_RS08975	0.89	-1.5
2,024,642	-		DDA3937_RS08975	0.89	-1.7
2,024,642	-		DDA3937_RS08975	0.89	-2.6
2,024,642	-		DDA3937_RS08975	0.89	-2.7
2,024,642	-		DDA3937_RS08975	0.89	-1.1
2,024,642	-		DDA3937_RS08975	0.89	-0.6
2,024,642	-		DDA3937_RS08975	0.89	+1.6
2,024,642	-		DDA3937_RS08975	0.89	-0.1
2,024,642	-		DDA3937_RS08975	0.89	-0.6
2,024,642	-		DDA3937_RS08975	0.89	+0.4
2,024,644	-		DDA3937_RS08975	0.90	-0.2
2,024,652	+				-2.9
2,024,652	+				-1.5
2,024,653	-				-1.3
2,024,653	-				-0.3
2,024,703	-				-1.5
2,024,703	-				+1.6
2,024,703	-				+0.3
2,024,706	+				-2.3
2,024,717	-				-0.8
2,024,717	-				-0.3
2,024,717	-				+0.6
2,024,717	-				+0.1
2,024,717	-				-2.4
2,024,717	-				+1.1
2,024,719	-				-1.5
2,024,719	-				-0.6
2,024,721	-				-2.9
2,024,721	-				+0.3
2,024,721	-				-1.2
2,024,722	-				+0.9
2,024,730	-				-1.0
2,024,730	-				-0.1
2,024,730	-				-2.0
2,024,843	+				-3.2
2,024,847	+				+0.4
2,024,847	+				-2.7
2,024,847	+				+0.7
2,024,847	+				+1.7
2,024,847	+				-1.4
2,024,847	+				+0.4
2,024,851	+				+1.8
2,024,851	+				-0.3
2,024,851	+				-1.4
2,024,851	+				-1.6
2,024,851	+				+1.1
2,024,852	-				-1.1
2,024,852	-				-2.7
2,024,852	-				+1.1
2,024,857	-				-3.1
2,024,857	-				+1.1
2,024,880	-				+2.1
2,024,880	-				+0.3
2,024,882	+				-0.1
2,024,883	-				-1.3
2,024,883	-				+1.3
2,024,915	-				-1.7
2,024,928	+				-0.4
2,024,928	+				-0.8
2,024,929	-				-0.5
2,024,952	+				+0.3
2,024,952	+				-3.2
2,024,953	-				+0.5
2,024,953	-				-0.7
2,024,953	-				+1.5
2,025,018	+				+2.0
2,025,019	-				+0.6
2,025,019	-				-2.6
2,025,053	+				+1.5
2,025,054	-				-0.8
2,025,054	-		DDA3937_RS08980	0.10	-0.3
2,025,054	-		DDA3937_RS08980	0.10	-0.5
2,025,059	-		DDA3937_RS08980	0.10	-1.1
2,025,123	+		DDA3937_RS08980	0.17	+0.1
2,025,123	+		DDA3937_RS08980	0.17	+0.9
2,025,123	+		DDA3937_RS08980	0.17	-2.0
2,025,123	+		DDA3937_RS08980	0.17	-0.5
2,025,123	+		DDA3937_RS08980	0.17	+1.5
2,025,123	+		DDA3937_RS08980	0.17	-1.8
2,025,123	+				+2.5
2,025,124	-		DDA3937_RS08980	0.17	-1.7
2,025,124	-		DDA3937_RS08980	0.17	-0.1
2,025,172	+		DDA3937_RS08980	0.21	-1.1
2,025,202	-		DDA3937_RS08980	0.24	-1.7
2,025,268	+		DDA3937_RS08980	0.31	+2.3
2,025,268	+		DDA3937_RS08980	0.31	-1.6
2,025,268	+		DDA3937_RS08980	0.31	+0.0
2,025,269	-		DDA3937_RS08980	0.31	-2.1
2,025,371	+		DDA3937_RS08980	0.41	-2.1
2,025,371	+		DDA3937_RS08980	0.41	+0.3
2,025,371	+		DDA3937_RS08980	0.41	-1.7
2,025,371	+		DDA3937_RS08980	0.41	-1.8
2,025,534	-		DDA3937_RS08980	0.57	+0.8
2,025,534	-		DDA3937_RS08980	0.57	+0.7
2,025,534	-		DDA3937_RS08980	0.57	-0.8
2,025,603	+		DDA3937_RS08980	0.63	-1.8
2,025,604	-		DDA3937_RS08980	0.63	+0.5
2,025,684	-		DDA3937_RS08980	0.71	-0.1
2,025,684	-		DDA3937_RS08980	0.71	+2.6
2,025,712	+		DDA3937_RS08980	0.74	+1.0
2,025,713	-		DDA3937_RS08980	0.74	+0.5
2,025,713	-		DDA3937_RS08980	0.74	+2.4
2,025,714	+		DDA3937_RS08980	0.74	-0.1
2,025,714	+		DDA3937_RS08980	0.74	+0.8
2,025,714	+		DDA3937_RS08980	0.74	+0.2
2,025,715	-		DDA3937_RS08980	0.74	-2.9
2,025,715	-		DDA3937_RS08980	0.74	-2.8
2,025,715	-		DDA3937_RS08980	0.74	+1.5
2,025,715	-		DDA3937_RS08980	0.74	+0.2
2,025,715	-		DDA3937_RS08980	0.74	-1.8
2,025,843	+		DDA3937_RS08980	0.87	-0.8
2,025,844	-		DDA3937_RS08980	0.87	+0.4
2,026,027	-				+1.5
2,026,040	+				+1.7
2,026,040	+				+0.6
2,026,073	+				-0.2
2,026,074	-				-1.5
2,026,094	-				+0.5
2,026,113	+				-2.8
2,026,113	+				-1.7
2,026,114	-				-2.8
2,026,126	-				-0.5
2,026,177	+				+1.1
2,026,178	-				+0.9
2,026,204	+				+0.8
2,026,204	+				-2.2
2,026,205	-				-0.5
2,026,275	+				+2.4
2,026,275	+				-2.6
2,026,275	+				+0.8
2,026,300	+				-0.7
2,026,300	+				-0.8
2,026,300	+				-0.7
2,026,300	+				+0.5
2,026,300	+				-2.4
2,026,300	+				+0.5
2,026,300	+				-2.2
2,026,300	+				-2.3
2,026,300	+				-4.2
2,026,301	-				-2.5
2,026,301	-				+0.7
2,026,301	-				-0.3
2,026,301	-				+0.4
2,026,301	-				-0.1
2,026,301	-				-1.0
2,026,301	-				-1.0
2,026,301	-				-0.5
2,026,301	-				-2.4
2,026,301	-				-1.1
2,026,301	-				-0.7
2,026,301	-				+1.2
2,026,344	+				+1.0
2,026,345	-				-0.3
2,026,414	+		DDA3937_RS22780	0.20	-0.1
2,026,414	+		DDA3937_RS22780	0.20	-0.4
2,026,485	+		DDA3937_RS22780	0.39	-1.2
2,026,485	+		DDA3937_RS22780	0.39	-2.5
2,026,485	+		DDA3937_RS22780	0.39	+0.4
2,026,486	-		DDA3937_RS22780	0.39	-2.6
2,026,518	+		DDA3937_RS22780	0.47	+0.7
2,026,519	-		DDA3937_RS22780	0.48	-2.7
2,026,551	+		DDA3937_RS22780	0.56	-1.0
2,026,573	+		DDA3937_RS22780	0.62	-0.8
2,026,573	+		DDA3937_RS22780	0.62	+0.4
2,026,573	+		DDA3937_RS22780	0.62	-2.7
2,026,573	+		DDA3937_RS22780	0.62	-1.4
2,026,573	+		DDA3937_RS22780	0.62	+0.3
2,026,574	-		DDA3937_RS22780	0.62	-0.7
2,026,574	-		DDA3937_RS22780	0.62	-1.5
2,026,636	-		DDA3937_RS22780	0.78	-2.3
2,026,638	+		DDA3937_RS22780	0.79	-2.0
2,026,638	+		DDA3937_RS22780	0.79	-2.0
2,026,638	+		DDA3937_RS22780	0.79	-1.3
2,026,638	+		DDA3937_RS22780	0.79	-1.3
2,026,639	-		DDA3937_RS22780	0.79	-0.7
2,026,639	-		DDA3937_RS22780	0.79	-2.2
2,026,747	-				-3.0
2,026,756	+				+1.7
2,026,757	-				-0.8
2,026,757	-				+1.5
2,026,757	-				-1.8
2,026,780	+				+0.6
2,026,781	-				+0.0
2,026,781	-				-1.6
2,026,781	-				+1.6
2,026,781	-				-1.7
2,026,781	-				+2.4
2,026,781	-				-1.5
2,026,813	-		DDA3937_RS08990	0.12	+2.1
2,026,823	+		DDA3937_RS08990	0.14	-3.3
2,026,830	+		DDA3937_RS08990	0.16	+0.0
2,026,831	-		DDA3937_RS08990	0.16	+2.7
2,026,831	-		DDA3937_RS08990	0.16	+3.9
2,026,831	-		DDA3937_RS08990	0.16	-2.6
2,026,833	+		DDA3937_RS08990	0.16	-0.0
2,026,833	+		DDA3937_RS08990	0.16	-2.0
2,026,833	+		DDA3937_RS08990	0.16	+0.4
2,026,834	-		DDA3937_RS08990	0.17	-1.5
2,026,834	-		DDA3937_RS08990	0.17	-0.7
2,026,862	-		DDA3937_RS08990	0.23	+2.3
2,026,893	+		DDA3937_RS08990	0.30	-0.2
2,026,894	-		DDA3937_RS08990	0.31	+1.8
2,026,929	+		DDA3937_RS08990	0.39	-2.2
2,026,937	+		DDA3937_RS08990	0.41	+1.3
2,026,938	-		DDA3937_RS08990	0.41	-2.0
2,026,957	+		DDA3937_RS08990	0.45	-1.1
2,026,957	+		DDA3937_RS08990	0.45	-2.1
2,026,957	+		DDA3937_RS08990	0.45	-2.7
2,026,968	-		DDA3937_RS08990	0.48	-1.7